Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 S 1.81399 * 109.47054 * 180.02562 * 12 10 9 14 14 O 1.42107 * 108.57811 * 294.48713 * 13 12 10 15 15 O 1.42101 * 108.57883 * 65.51061 * 13 12 10 16 16 C 1.81397 * 101.92362 * 180.02562 * 13 12 10 17 17 C 1.53001 * 117.49780 * 253.75026 * 16 13 12 18 18 C 1.53004 * 117.50258 * 185.08668 * 16 13 12 19 19 H 0.97001 * 120.00876 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 22 22 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 23 23 H 1.08998 * 115.55367 * 39.41060 * 16 13 12 24 24 H 1.09000 * 117.49637 * 359.97438 * 17 16 13 25 25 H 1.09000 * 117.50148 * 145.01926 * 17 16 13 26 26 H 1.08996 * 117.50048 * 214.97469 * 18 16 13 27 27 H 1.09000 * 117.49269 * 0.02562 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 16 2.4228 -6.2416 -0.0028 14 8 3.1414 -6.2223 -1.2286 15 8 3.1414 -6.2234 1.2230 16 6 1.3175 -7.6799 -0.0042 17 6 1.1877 -8.4724 1.2981 18 6 1.9587 -9.0639 0.1153 19 1 -0.4851 0.8400 0.0004 20 1 0.3535 -2.3906 -0.0005 21 1 0.6170 -4.9201 -0.8920 22 1 0.6177 -4.9213 0.8880 23 1 0.4288 -7.5892 -0.6288 24 1 1.7668 -8.1297 2.1556 25 1 0.2138 -8.9034 1.5300 26 1 1.4916 -9.8838 -0.4303 27 1 3.0448 -9.1101 0.1952 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260789740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -80.560814 kcal Electronic energy + Delta-G solvation = -14369.772092 eV Core-core repulsion = 11642.195564 eV Total energy + Delta-G solvation = -2727.576528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.34550 -37.21408 -36.45741 -35.55075 -34.17125 -31.51244 -29.70652 -24.89593 -23.51557 -22.78244 -19.78734 -18.49194 -18.07640 -17.29034 -16.14664 -15.66176 -15.65047 -14.99385 -14.56942 -14.08943 -13.86994 -13.48481 -12.63428 -12.06833 -11.97142 -11.68981 -11.63911 -11.55322 -11.21589 -11.20428 -11.14902 -10.68918 -10.40745 -10.37899 -10.20512 -9.68613 -8.84658 -8.14880 -6.55764 -3.97142 0.25126 2.92503 3.08681 3.22355 3.25541 3.30664 3.61872 3.86681 4.10597 4.28792 4.48116 4.61030 4.73432 4.79863 5.12655 5.27704 5.36675 5.44787 5.53344 5.61494 5.75005 6.01012 7.44465 7.86518 8.37309 8.99620 9.31891 9.80063 10.61219 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.066189 B = 0.005987 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.930787 B = 4675.492696 C = 4856.964921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.305 4.305 8 H 0.110 0.890 9 N -0.540 5.540 10 C 0.454 3.546 11 O -0.587 6.587 12 C -0.631 4.631 13 S 2.488 3.512 14 O -0.924 6.924 15 O -0.925 6.925 16 C -0.686 4.686 17 C -0.130 4.130 18 C -0.127 4.127 19 H 0.274 0.726 20 H 0.396 0.604 21 H 0.142 0.858 22 H 0.143 0.857 23 H 0.156 0.844 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -13.859 0.991 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.434 4.434 8 H 0.128 0.872 9 N -0.175 5.175 10 C 0.238 3.762 11 O -0.473 6.473 12 C -0.762 4.762 13 S 2.665 3.335 14 O -0.921 6.921 15 O -0.922 6.922 16 C -0.791 4.791 17 C -0.167 4.167 18 C -0.165 4.165 19 H 0.084 0.916 20 H 0.230 0.770 21 H 0.160 0.840 22 H 0.162 0.838 23 H 0.174 0.826 24 H 0.139 0.861 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.173 -13.663 0.983 13.870 hybrid contribution -1.571 0.888 -0.194 1.815 sum -3.744 -12.776 0.789 13.336 Atomic orbital electron populations 1.69615 1.06082 1.28546 1.49346 1.25354 0.95711 1.00053 0.96575 0.85717 0.79877 0.80477 0.77839 1.18895 1.20534 1.20526 1.19911 0.93783 0.81823 1.47931 0.87230 1.41743 1.09405 1.04278 1.62032 1.18455 0.87466 0.83661 0.86599 1.90669 1.12868 1.86494 1.57295 1.30519 1.18432 1.15590 1.11681 1.06181 0.76055 0.75889 0.75418 1.93539 1.67028 1.85402 1.46129 1.93529 1.67015 1.85464 1.46170 1.32554 1.20030 1.14743 1.11806 1.22895 1.03455 0.99965 0.90414 1.22748 1.00466 0.91905 1.01361 0.91583 0.77013 0.84001 0.83844 0.82593 0.86147 0.87195 0.87040 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.18 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 15 4 H -0.26 -5.94 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.31 -8.55 9.68 -14.93 -0.14 -8.70 15 8 H 0.11 3.22 7.16 -52.48 -0.38 2.84 15 9 N -0.54 -13.84 5.29 -10.96 -0.06 -13.90 15 10 C 0.45 11.08 7.80 -10.99 -0.09 10.99 15 11 O -0.59 -16.70 15.20 2.53 0.04 -16.66 15 12 C -0.63 -10.55 6.29 36.01 0.23 -10.33 15 13 S 2.49 41.64 4.35 -107.50 -0.47 41.17 15 14 O -0.92 -19.06 17.94 -59.53 -1.07 -20.13 15 15 O -0.92 -18.37 17.10 -59.52 -1.02 -19.38 15 16 C -0.69 -7.41 6.25 -26.73 -0.17 -7.58 15 17 C -0.13 -1.19 10.13 -26.69 -0.27 -1.46 15 18 C -0.13 -1.20 10.30 -26.69 -0.27 -1.47 15 19 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 20 H 0.40 9.41 7.90 -40.82 -0.32 9.09 15 21 H 0.14 1.86 8.14 -51.92 -0.42 1.43 15 22 H 0.14 1.88 8.14 -51.92 -0.42 1.45 15 23 H 0.16 1.27 8.14 -51.93 -0.42 0.84 15 24 H 0.12 1.16 7.58 -51.93 -0.39 0.77 15 25 H 0.11 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.11 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.11 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 259.55 15.07 3.91 3.91 Total: -1.00 -36.49 259.55 -6.54 -43.03 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.76 Total: 7.28 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.81 Total: -17.95 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.67 Total: -37.08 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.05 Total: -56.18 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 41.64 SS G_CDS: -0.47 Total: 41.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -36.49 -6.54 -43.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.535 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds