Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 S 1.81399 * 109.47054 * 180.02562 * 12 10 9 14 14 O 1.42107 * 108.57811 * 294.48713 * 13 12 10 15 15 O 1.42101 * 108.57883 * 65.51061 * 13 12 10 16 16 C 1.81397 * 101.92362 * 180.02562 * 13 12 10 17 17 C 1.53001 * 117.49780 * 253.75026 * 16 13 12 18 18 C 1.53004 * 117.50258 * 185.08668 * 16 13 12 19 19 H 0.97001 * 120.00876 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 22 22 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 23 23 H 1.08998 * 115.55367 * 39.41060 * 16 13 12 24 24 H 1.09000 * 117.49637 * 359.97438 * 17 16 13 25 25 H 1.09000 * 117.50148 * 145.01926 * 17 16 13 26 26 H 1.08996 * 117.50048 * 214.97469 * 18 16 13 27 27 H 1.09000 * 117.49269 * 0.02562 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 16 2.4228 -6.2416 -0.0028 14 8 3.1414 -6.2223 -1.2286 15 8 3.1414 -6.2234 1.2230 16 6 1.3175 -7.6799 -0.0042 17 6 1.1877 -8.4724 1.2981 18 6 1.9587 -9.0639 0.1153 19 1 -0.4851 0.8400 0.0004 20 1 0.3535 -2.3906 -0.0005 21 1 0.6170 -4.9201 -0.8920 22 1 0.6177 -4.9213 0.8880 23 1 0.4288 -7.5892 -0.6288 24 1 1.7668 -8.1297 2.1556 25 1 0.2138 -8.9034 1.5300 26 1 1.4916 -9.8838 -0.4303 27 1 3.0448 -9.1101 0.1952 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260789740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -110.848023 kcal Electronic energy + Delta-G solvation = -14371.085444 eV Core-core repulsion = 11642.195564 eV Total energy + Delta-G solvation = -2728.889880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30690 -38.20416 -37.68464 -36.95812 -36.21114 -33.53618 -31.27104 -26.87870 -24.53025 -23.46445 -21.64175 -20.20748 -19.65884 -18.51655 -17.70033 -17.20343 -17.06543 -16.46750 -16.03817 -15.72256 -15.64234 -14.59758 -14.38077 -13.64248 -13.61746 -13.14300 -13.04099 -12.94410 -12.54026 -12.50485 -12.20745 -12.11247 -11.97842 -11.89088 -11.66935 -11.32033 -10.83836 -10.18744 -8.59360 -6.09909 -1.00743 1.29521 1.39488 1.54102 1.79148 1.84442 2.20145 2.29518 2.62945 3.04974 3.13964 3.28123 3.58640 3.79812 3.98980 4.03453 4.15541 4.42613 4.64826 4.73155 4.93837 5.10212 5.32053 5.80972 6.37354 6.94658 7.30450 7.85611 8.57582 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.066189 B = 0.005987 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.930787 B = 4675.492696 C = 4856.964921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.005 4.005 3 Si 0.996 3.004 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.348 4.348 8 H 0.081 0.919 9 N -0.548 5.548 10 C 0.440 3.560 11 O -0.638 6.638 12 C -0.626 4.626 13 S 2.471 3.529 14 O -0.980 6.980 15 O -0.973 6.973 16 C -0.660 4.660 17 C -0.121 4.121 18 C -0.131 4.131 19 H 0.283 0.717 20 H 0.404 0.596 21 H 0.184 0.816 22 H 0.185 0.815 23 H 0.198 0.802 24 H 0.109 0.891 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 -15.132 1.048 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.206 4.206 3 Si 0.819 3.181 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.477 4.477 8 H 0.099 0.901 9 N -0.183 5.183 10 C 0.227 3.773 11 O -0.528 6.528 12 C -0.755 4.755 13 S 2.656 3.344 14 O -0.977 6.977 15 O -0.971 6.971 16 C -0.772 4.772 17 C -0.159 4.159 18 C -0.170 4.170 19 H 0.093 0.907 20 H 0.239 0.761 21 H 0.202 0.798 22 H 0.202 0.798 23 H 0.215 0.785 24 H 0.128 0.872 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.621 -14.879 1.040 15.615 hybrid contribution -0.870 1.150 -0.188 1.455 sum -5.492 -13.729 0.852 14.811 Atomic orbital electron populations 1.69646 1.06799 1.29887 1.48585 1.26122 0.96656 1.02540 0.95288 0.84830 0.77970 0.76540 0.78750 1.19961 1.19061 1.19017 1.19841 0.93056 0.83818 1.50999 0.90087 1.41792 1.09676 1.04304 1.62498 1.19645 0.87437 0.85776 0.84437 1.90636 1.15598 1.87817 1.58743 1.30467 1.18496 1.10832 1.15727 1.06161 0.77177 0.77520 0.73564 1.93471 1.69991 1.86678 1.47563 1.93466 1.69762 1.86615 1.47221 1.31981 1.19512 1.10905 1.14846 1.23199 1.05129 0.98241 0.89318 1.23125 1.00611 0.91484 1.01750 0.90715 0.76096 0.79847 0.79750 0.78476 0.87233 0.83364 0.83554 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.94 13.05 21.66 0.28 -47.66 15 2 C 0.00 -0.25 5.50 84.93 0.47 0.22 15 3 Si 1.00 42.71 29.55 68.60 2.03 44.74 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.35 -20.13 9.68 84.04 0.81 -19.32 15 8 H 0.08 5.05 7.16 -2.91 -0.02 5.03 15 9 N -0.55 -28.59 5.29 -306.98 -1.62 -30.21 15 10 C 0.44 21.97 7.80 87.66 0.68 22.66 15 11 O -0.64 -38.27 15.20 -0.20 0.00 -38.27 15 12 C -0.63 -19.98 6.29 71.24 0.45 -19.53 15 13 S 2.47 82.10 4.35 -56.49 -0.25 81.85 15 14 O -0.98 -41.72 17.94 -125.74 -2.26 -43.97 15 15 O -0.97 -39.93 17.10 -125.75 -2.15 -42.08 15 16 C -0.66 -11.69 6.25 30.60 0.19 -11.50 15 17 C -0.12 -1.70 10.13 30.62 0.31 -1.39 15 18 C -0.13 -1.99 10.30 30.62 0.32 -1.67 15 19 H 0.28 13.77 8.31 -92.71 -0.77 13.00 15 20 H 0.40 19.19 7.90 -92.71 -0.73 18.46 15 21 H 0.18 4.23 8.14 -2.39 -0.02 4.21 15 22 H 0.18 4.28 8.14 -2.39 -0.02 4.26 15 23 H 0.20 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.11 1.85 7.58 -2.39 -0.02 1.83 15 25 H 0.15 1.05 8.14 -2.39 -0.02 1.03 15 26 H 0.15 1.27 8.14 -2.39 -0.02 1.25 15 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 Total: -1.00 -84.69 259.55 -0.28 -84.96 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.46 Total: 21.17 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.23 Total: -30.52 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.34 Total: -77.87 kcal Atomic # 8 Polarization: -119.92 SS G_CDS: -4.41 Total: -124.33 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 82.10 SS G_CDS: -0.25 Total: 81.85 kcal Total: -84.69 -0.28 -84.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds