Wall clock time and date at job start Mon Mar 30 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99603 * 2 1 4 4 H 1.48498 * 109.47313 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.47144 * 30.00093 * 3 2 1 6 6 H 1.48506 * 109.47053 * 150.00121 * 3 2 1 7 7 C 1.37876 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47083 * 300.00485 * 9 7 2 11 11 C 1.53000 * 109.46801 * 60.00200 * 9 7 2 12 12 N 1.46901 * 109.46769 * 184.99750 * 11 9 7 13 13 C 1.50697 * 109.47085 * 180.02562 * 9 7 2 14 14 N 1.31739 * 123.78538 * 300.02858 * 13 9 7 15 15 N 1.27573 * 118.28300 * 179.97438 * 14 13 9 16 16 S 1.56506 * 109.25237 * 359.97438 * 15 14 13 17 17 C 1.35492 * 123.77983 * 119.72448 * 13 9 7 18 18 Cl 1.73598 * 127.93301 * 0.04101 * 17 13 9 19 19 H 0.96999 * 120.00539 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47398 * 305.00045 * 11 9 7 21 21 H 1.09001 * 109.47194 * 65.00225 * 11 9 7 22 22 H 1.00898 * 110.99877 * 56.04956 * 12 11 9 23 23 H 1.00908 * 110.99847 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5799 -1.2495 12 7 -0.4521 -3.7952 -1.1906 13 6 2.2305 -3.6445 -0.0005 14 7 3.1230 -3.8452 -0.9485 15 7 3.9021 -4.8498 -0.8423 16 16 3.5664 -5.6263 0.4744 17 6 2.2957 -4.5800 0.9775 18 17 1.3199 -4.6976 2.4084 19 1 -0.4851 0.8400 0.0004 20 1 -0.2764 -1.7042 -1.2950 21 1 1.0025 -2.6115 -2.1375 22 1 -0.9994 -3.8205 -0.3434 23 1 -1.0425 -3.8718 -2.0054 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260819030.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:52 Heat of formation + Delta-G solvation = 38.219742 kcal Electronic energy + Delta-G solvation = -12387.027395 eV Core-core repulsion = 10001.770400 eV Total energy + Delta-G solvation = -2385.256996 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.86220 -37.93630 -37.06899 -34.15090 -32.96074 -29.82053 -27.64042 -25.93813 -23.43744 -21.86732 -19.48894 -18.27464 -17.44411 -16.72153 -16.57665 -16.24153 -15.34146 -14.69928 -14.05770 -13.91770 -13.55646 -13.41462 -13.18588 -12.88582 -12.64621 -12.18254 -12.01137 -11.59994 -11.45180 -10.96232 -10.57759 -10.46057 -10.17021 -9.37404 -8.14960 -6.28536 -0.80451 -0.20253 0.55835 1.22744 1.36277 1.41189 1.45046 1.53404 2.42140 3.10305 3.32236 3.85014 4.05376 4.60206 4.85921 5.04632 5.43136 5.70922 5.79996 6.09602 6.47764 6.67318 6.85710 6.92099 7.37943 8.87533 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.009822 C = 0.009348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.733759 B = 2850.096366 C = 2994.492744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.044 0.956 9 C 0.128 3.872 10 H 0.042 0.958 11 C 0.079 3.921 12 N -0.851 5.851 13 C 0.087 3.913 14 N -0.252 5.252 15 N -0.320 5.320 16 S 0.508 5.492 17 C -0.245 4.245 18 Cl 0.037 6.963 19 H 0.266 0.734 20 H 0.051 0.949 21 H 0.034 0.966 22 H 0.337 0.663 23 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -9.848 4.012 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.063 0.937 9 C 0.105 3.895 10 H 0.060 0.940 11 C -0.052 4.052 12 N -0.380 5.380 13 C -0.060 4.060 14 N -0.118 5.118 15 N -0.299 5.299 16 S 0.641 5.359 17 C -0.410 4.410 18 Cl 0.065 6.935 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.052 0.948 22 H 0.148 0.852 23 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.540 -10.988 3.168 11.972 hybrid contribution -1.755 2.599 0.533 3.181 sum 1.785 -8.389 3.701 9.342 Atomic orbital electron populations 1.69926 1.06668 1.27617 1.50379 1.25526 0.95708 1.01754 0.94242 0.85638 0.78716 0.79584 0.78243 1.20301 1.20221 1.19898 1.21133 0.92659 0.90862 1.51840 0.93749 1.17392 0.89506 0.86950 0.95624 0.93963 1.21668 0.95605 0.90744 0.97220 1.58894 1.30229 1.41530 1.07336 1.22693 0.96595 0.98308 0.88354 1.71307 1.04111 1.11061 1.25322 1.78661 1.24056 1.08816 1.18389 1.80560 1.17053 1.25831 1.12435 1.27942 1.07834 1.05458 0.99778 1.98337 1.67356 1.97105 1.30691 0.92505 0.93140 0.94753 0.85179 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.07 11.29 21.45 0.24 -48.83 14 2 C 0.03 1.49 5.29 84.65 0.45 1.93 14 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 14 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 14 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 14 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 14 7 C -0.53 -28.65 8.53 25.60 0.22 -28.43 14 8 H 0.04 2.51 7.74 -2.91 -0.02 2.48 14 9 C 0.13 6.25 2.28 -12.29 -0.03 6.22 14 10 H 0.04 2.14 7.28 -2.39 -0.02 2.12 14 11 C 0.08 3.71 6.00 86.30 0.52 4.22 14 12 N -0.85 -32.52 9.34 -186.71 -1.74 -34.26 14 13 C 0.09 3.81 5.10 41.94 0.21 4.02 14 14 N -0.25 -11.40 11.58 -51.07 -0.59 -11.99 14 15 N -0.32 -12.27 12.54 37.02 0.46 -11.80 14 16 S 0.51 14.86 23.40 -56.49 -1.32 13.54 14 17 C -0.25 -8.85 7.28 67.18 0.49 -8.36 14 18 Cl 0.04 1.16 28.47 -2.72 -0.08 1.08 14 19 H 0.27 13.68 8.31 -92.71 -0.77 12.91 14 20 H 0.05 2.60 5.95 -2.39 -0.01 2.59 14 21 H 0.03 1.71 8.09 -2.39 -0.02 1.70 14 22 H 0.34 12.22 8.99 -89.70 -0.81 11.42 14 23 H 0.34 11.24 9.08 -89.69 -0.81 10.42 14 Total: -1.00 -59.13 237.39 0.51 -58.62 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -0.34 Total: 9.04 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 1.86 Total: -20.39 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -1.63 Total: -106.88 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 14.86 SS G_CDS: -1.32 Total: 13.54 kcal Atomic # 17 Polarization: 1.16 SS G_CDS: -0.08 Total: 1.08 kcal Total: -59.13 0.51 -58.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260819030.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.840 kcal (2) G-P(sol) polarization free energy of solvation -59.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds