Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47030 * 270.00284 * 3 2 1 5 5 H 1.48505 * 109.46956 * 29.99919 * 3 2 1 6 6 H 1.48500 * 109.47295 * 149.99904 * 3 2 1 7 7 C 1.37878 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00052 * 174.86321 * 7 2 1 9 9 C 1.50701 * 120.00175 * 355.13476 * 7 2 1 10 10 H 1.09002 * 109.46994 * 334.91900 * 9 7 2 11 11 C 1.52996 * 109.47369 * 214.91632 * 9 7 2 12 12 N 1.46903 * 109.47264 * 65.41820 * 11 9 7 13 13 C 1.50705 * 109.46982 * 94.91213 * 9 7 2 14 14 N 1.31743 * 123.77980 * 59.70533 * 13 9 7 15 15 N 1.27569 * 118.28241 * 179.81326 * 14 13 9 16 16 S 1.56509 * 109.24885 * 0.43565 * 15 14 13 17 17 C 1.35488 * 123.78607 * 239.99953 * 13 9 7 18 18 Cl 1.73602 * 127.93010 * 359.96823 * 17 13 9 19 19 H 0.96999 * 120.00495 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47307 * 185.42023 * 11 9 7 21 21 H 1.09004 * 109.46985 * 305.42390 * 11 9 7 22 22 H 1.00895 * 111.00089 * 174.62123 * 12 11 9 23 23 H 1.00896 * 110.99913 * 298.57509 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1960 -0.0832 9 6 1.2552 -2.4968 0.1118 10 1 0.3019 -2.3260 0.6120 11 6 2.0847 -3.4948 0.9222 12 7 2.2172 -3.0135 2.3038 13 6 1.0066 -3.0526 -1.2668 14 7 1.9652 -3.3567 -2.1178 15 7 1.6354 -3.8247 -3.2578 16 16 0.0752 -3.9079 -3.3497 17 6 -0.2279 -3.2903 -1.7720 18 17 -1.7632 -3.0312 -1.0042 19 1 -0.4851 0.8400 0.0004 20 1 1.5882 -4.4651 0.9215 21 1 3.0740 -3.5925 0.4751 22 1 2.6855 -3.6957 2.8810 23 1 2.6956 -2.1256 2.3331 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260819036.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = 36.625042 kcal Electronic energy + Delta-G solvation = -12423.312595 eV Core-core repulsion = 10037.986448 eV Total energy + Delta-G solvation = -2385.326147 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.78728 -37.78800 -36.95783 -34.20334 -32.92936 -29.61057 -27.57396 -26.27644 -23.11063 -21.78533 -19.70654 -17.95997 -17.29984 -16.81781 -16.48475 -16.25353 -15.55218 -14.61564 -14.10050 -13.86214 -13.45864 -13.28204 -13.06877 -12.92436 -12.68190 -12.39020 -11.77228 -11.48943 -11.32593 -10.90328 -10.61536 -10.41196 -10.06247 -9.33008 -8.11483 -6.20047 -0.77118 -0.14247 0.61978 1.32618 1.37844 1.44113 1.47571 1.54453 2.44165 3.14160 3.44586 3.89391 4.10182 4.57205 4.71259 5.06970 5.19017 5.62084 5.80446 6.22611 6.49132 6.86559 6.93813 6.95259 7.44852 8.94157 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.011253 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.899953 B = 2487.648842 C = 2615.378760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.047 0.953 9 C 0.108 3.892 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.843 5.843 13 C 0.069 3.931 14 N -0.251 5.251 15 N -0.320 5.320 16 S 0.480 5.520 17 C -0.241 4.241 18 Cl 0.037 6.963 19 H 0.263 0.737 20 H 0.050 0.950 21 H 0.012 0.988 22 H 0.341 0.659 23 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -6.597 -2.599 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.085 3.915 10 H 0.091 0.909 11 C -0.043 4.043 12 N -0.374 5.374 13 C -0.078 4.078 14 N -0.118 5.118 15 N -0.299 5.299 16 S 0.613 5.387 17 C -0.406 4.406 18 Cl 0.065 6.935 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.030 0.970 22 H 0.153 0.847 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.958 -7.086 -4.172 8.739 hybrid contribution 0.875 1.647 1.130 2.181 sum -2.083 -5.439 -3.042 6.571 Atomic orbital electron populations 1.70031 1.06550 1.27354 1.48578 1.25597 0.95644 1.01726 0.94168 0.85750 0.79248 0.80229 0.77510 1.21590 1.20651 1.19091 1.21002 0.92656 0.90347 1.50923 0.93435 1.17672 0.98826 0.92232 0.82763 0.90854 1.21544 0.97221 0.96311 0.89271 1.58523 1.60717 1.08222 1.09888 1.23466 0.86230 0.95687 1.02396 1.71296 1.30766 1.13087 0.96624 1.78683 1.11558 1.22792 1.16893 1.80584 1.04943 1.45179 1.08001 1.28017 0.94430 1.14999 1.03133 1.98342 1.20684 1.94925 1.79533 0.92781 0.93159 0.97016 0.84670 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.65 12.84 21.45 0.28 -47.37 14 2 C 0.03 1.64 5.45 84.65 0.46 2.11 14 3 Si 0.95 42.37 29.54 68.60 2.03 44.39 14 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 14 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 14 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 14 7 C -0.51 -26.57 7.41 25.60 0.19 -26.38 14 8 H 0.05 2.53 7.82 -2.91 -0.02 2.51 14 9 C 0.11 5.15 2.43 -12.29 -0.03 5.12 14 10 H 0.07 3.82 6.52 -2.39 -0.02 3.80 14 11 C 0.09 3.67 6.18 86.30 0.53 4.21 14 12 N -0.84 -31.61 9.58 -186.71 -1.79 -33.40 14 13 C 0.07 3.11 5.41 41.94 0.23 3.34 14 14 N -0.25 -11.40 11.63 -51.07 -0.59 -11.99 14 15 N -0.32 -12.67 12.54 37.02 0.46 -12.20 14 16 S 0.48 15.38 23.40 -56.49 -1.32 14.06 14 17 C -0.24 -9.56 7.28 67.18 0.49 -9.07 14 18 Cl 0.04 1.37 28.48 -2.72 -0.08 1.29 14 19 H 0.26 13.59 8.31 -92.71 -0.77 12.81 14 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 14 21 H 0.01 0.50 8.14 -2.38 -0.02 0.48 14 22 H 0.34 10.24 9.08 -89.70 -0.81 9.42 14 23 H 0.35 13.49 8.23 -89.70 -0.74 12.76 14 Total: -1.00 -57.71 239.72 0.58 -57.14 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -0.28 Total: 8.76 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 1.87 Total: -20.67 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -1.64 Total: -104.97 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 15.38 SS G_CDS: -1.32 Total: 14.06 kcal Atomic # 17 Polarization: 1.37 SS G_CDS: -0.08 Total: 1.29 kcal Total: -57.71 0.58 -57.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260819036.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.763 kcal (2) G-P(sol) polarization free energy of solvation -57.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds