Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 N 1.31738 * 123.77878 * 284.69600 * 13 10 9 15 15 N 1.27575 * 118.28214 * 179.81759 * 14 13 10 16 16 S 1.56508 * 109.25098 * 0.43658 * 15 14 13 17 17 C 1.35491 * 123.78588 * 105.00070 * 13 10 9 18 18 Cl 1.73595 * 127.93207 * 359.93803 * 17 13 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 23 23 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 7 0.8208 -5.5210 0.8441 15 7 0.2210 -6.6238 0.6169 16 16 0.4733 -7.0522 -0.8670 17 6 1.4452 -5.6932 -1.2805 18 17 2.1895 -5.3388 -2.8082 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.5699 -2.8253 1.3248 23 1 2.3958 -3.7609 2.0403 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260882315.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = 54.128981 kcal Electronic energy + Delta-G solvation = -12089.152236 eV Core-core repulsion = 9704.585117 eV Total energy + Delta-G solvation = -2384.567119 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.77430 -36.91981 -35.64908 -32.58966 -30.96620 -28.05194 -26.65539 -24.68017 -21.85422 -20.61306 -17.97832 -16.92274 -16.08124 -15.65229 -14.84111 -14.60179 -13.76359 -12.85993 -12.79270 -12.36323 -12.35056 -12.24822 -11.77213 -11.09317 -10.93678 -10.66651 -10.46712 -10.10090 -9.92564 -9.51017 -9.30623 -9.16774 -8.50843 -7.85072 -6.12719 -4.17966 0.24811 0.80619 1.58166 2.24019 2.43999 3.24366 3.32569 3.35628 4.30669 4.39064 4.81736 5.22762 5.48886 5.75156 6.28725 6.51437 7.34818 7.51335 7.80153 7.83740 7.99746 8.15314 8.25551 8.87756 9.47457 10.98174 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.007482 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.935495 B = 3741.477123 C = 4003.026665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.001 3.999 10 C 0.169 3.831 11 H 0.094 0.906 12 N -0.837 5.837 13 C 0.076 3.924 14 N -0.212 5.212 15 N -0.281 5.281 16 S 0.425 5.575 17 C -0.230 4.230 18 Cl 0.031 6.969 19 H 0.262 0.738 20 H 0.026 0.974 21 H 0.019 0.981 22 H 0.352 0.648 23 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -11.909 -4.424 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.038 4.038 10 C 0.053 3.947 11 H 0.111 0.889 12 N -0.367 5.367 13 C -0.070 4.070 14 N -0.079 5.079 15 N -0.260 5.260 16 S 0.559 5.441 17 C -0.395 4.395 18 Cl 0.059 6.941 19 H 0.072 0.928 20 H 0.044 0.956 21 H 0.038 0.962 22 H 0.166 0.834 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.903 -13.734 -3.926 14.410 hybrid contribution 0.666 3.101 -0.499 3.211 sum 2.569 -10.633 -4.425 11.800 Atomic orbital electron populations 1.69985 1.06155 1.26786 1.49761 1.25011 0.94838 0.99394 0.94879 0.86488 0.80101 0.83487 0.77651 1.19545 1.20969 1.20955 1.21094 0.92957 0.90371 1.52009 0.92176 1.19813 0.94358 0.91249 0.98343 1.20246 0.94128 0.85869 0.94435 0.88858 1.59116 1.28003 1.45898 1.03688 1.22787 0.97729 0.99863 0.86634 1.71279 1.07375 1.01979 1.27271 1.78988 1.22528 1.12448 1.12057 1.81270 1.33611 1.20281 1.08922 1.27779 1.11301 1.04523 0.95893 1.98373 1.79461 1.93991 1.22294 0.92849 0.95614 0.96219 0.83366 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 14 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 14 7 C -0.53 -13.97 8.55 -34.44 -0.29 -14.26 14 8 H 0.06 1.52 7.15 -52.49 -0.38 1.15 14 9 C 0.00 0.04 4.60 -27.88 -0.13 -0.09 14 10 C 0.17 3.46 3.14 -68.87 -0.22 3.25 14 11 H 0.09 1.89 7.43 -51.92 -0.39 1.50 14 12 N -0.84 -16.04 9.17 -5.65 -0.05 -16.09 14 13 C 0.08 1.45 5.77 -83.61 -0.48 0.97 14 14 N -0.21 -4.12 11.38 32.51 0.37 -3.75 14 15 N -0.28 -4.80 12.54 60.35 0.76 -4.04 14 16 S 0.43 5.68 23.40 -107.50 -2.52 3.16 14 17 C -0.23 -3.69 7.28 29.75 0.22 -3.48 14 18 Cl 0.03 0.44 28.57 -51.86 -1.48 -1.04 14 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 14 20 H 0.03 0.70 8.14 -51.93 -0.42 0.28 14 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 14 22 H 0.35 6.62 7.90 -39.29 -0.31 6.30 14 23 H 0.34 6.60 8.75 -39.29 -0.34 6.26 14 LS Contribution 239.83 15.07 3.61 3.61 Total: -1.00 -29.26 239.83 -5.99 -35.25 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -1.40 Total: 4.33 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.00 Total: -12.02 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 1.81 Total: -49.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -2.52 Total: 3.16 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.48 Total: -1.04 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.26 -5.99 -35.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260882315.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.376 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds