Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 N 1.31738 * 123.77878 * 284.69600 * 13 10 9 15 15 N 1.27575 * 118.28214 * 179.81759 * 14 13 10 16 16 S 1.56508 * 109.25098 * 0.43658 * 15 14 13 17 17 C 1.35491 * 123.78588 * 105.00070 * 13 10 9 18 18 Cl 1.73595 * 127.93207 * 359.93803 * 17 13 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 23 23 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 7 0.8208 -5.5210 0.8441 15 7 0.2210 -6.6238 0.6169 16 16 0.4733 -7.0522 -0.8670 17 6 1.4452 -5.6932 -1.2805 18 17 2.1895 -5.3388 -2.8082 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.5699 -2.8253 1.3248 23 1 2.3958 -3.7609 2.0403 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260882315.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = 32.403268 kcal Electronic energy + Delta-G solvation = -12090.094334 eV Core-core repulsion = 9704.585117 eV Total energy + Delta-G solvation = -2385.509217 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.12455 -38.13806 -37.31777 -34.57944 -32.38157 -29.96896 -27.98470 -26.50607 -23.58470 -22.04905 -19.34940 -18.79218 -17.58293 -17.05672 -16.51540 -16.38369 -15.30294 -14.52826 -14.37494 -14.07183 -13.82317 -13.57578 -13.39248 -12.89497 -12.62107 -12.36930 -12.02095 -11.97688 -11.27989 -11.19414 -10.77974 -10.63264 -10.50783 -9.49934 -8.22825 -6.35155 -1.02294 -0.40678 0.34153 1.00960 1.02864 1.41269 1.42722 1.55159 2.39418 2.96547 3.11560 3.44499 3.96095 4.15797 4.62087 4.70764 5.30362 5.47452 5.72123 6.10181 6.23507 6.61800 6.65792 6.80156 7.35182 8.89205 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.007482 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.935495 B = 3741.477123 C = 4003.026665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.013 3.987 10 C 0.181 3.819 11 H 0.098 0.902 12 N -0.826 5.826 13 C 0.049 3.951 14 N -0.247 5.247 15 N -0.315 5.315 16 S 0.550 5.450 17 C -0.244 4.244 18 Cl 0.047 6.953 19 H 0.263 0.737 20 H -0.008 1.008 21 H -0.010 1.010 22 H 0.353 0.647 23 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -12.660 -5.283 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.091 0.909 9 C -0.026 4.026 10 C 0.065 3.935 11 H 0.116 0.884 12 N -0.356 5.356 13 C -0.098 4.098 14 N -0.113 5.113 15 N -0.295 5.295 16 S 0.684 5.316 17 C -0.409 4.409 18 Cl 0.075 6.925 19 H 0.071 0.929 20 H 0.010 0.990 21 H 0.008 0.992 22 H 0.168 0.832 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.967 -14.499 -4.775 15.551 hybrid contribution 0.287 3.168 -0.340 3.199 sum 3.254 -11.331 -5.115 12.851 Atomic orbital electron populations 1.70130 1.08021 1.27729 1.51280 1.25959 0.95619 1.03403 0.94546 0.85365 0.79414 0.78649 0.77411 1.17867 1.20813 1.20886 1.21508 0.93703 0.91060 1.50885 0.90893 1.19627 0.94487 0.93285 0.95207 1.19901 0.93043 0.85487 0.95045 0.88427 1.59126 1.27487 1.45713 1.03226 1.22532 0.99114 1.00177 0.88010 1.71305 1.08589 1.03050 1.28325 1.78593 1.23300 1.12258 1.15367 1.80793 1.29435 1.16322 1.05087 1.28066 1.11411 1.05561 0.95890 1.98380 1.79195 1.94064 1.20845 0.92857 0.98978 0.99196 0.83247 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.47 14 2 C 0.00 0.17 5.46 84.66 0.46 0.63 14 3 Si 0.97 42.80 29.54 68.60 2.03 44.82 14 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 14 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 14 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 14 7 C -0.53 -28.47 8.55 25.60 0.22 -28.25 14 8 H 0.07 3.62 7.15 -2.91 -0.02 3.60 14 9 C 0.01 0.68 4.60 29.85 0.14 0.82 14 10 C 0.18 7.45 3.14 44.17 0.14 7.59 14 11 H 0.10 3.89 7.43 -2.38 -0.02 3.87 14 12 N -0.83 -31.54 9.17 -171.80 -1.58 -33.12 14 13 C 0.05 1.86 5.77 41.94 0.24 2.10 14 14 N -0.25 -9.60 11.38 -51.07 -0.58 -10.18 14 15 N -0.32 -10.41 12.54 37.02 0.46 -9.95 14 16 S 0.55 13.27 23.40 -56.49 -1.32 11.95 14 17 C -0.24 -7.47 7.28 67.18 0.49 -6.98 14 18 Cl 0.05 1.25 28.57 -2.72 -0.08 1.17 14 19 H 0.26 14.82 8.31 -92.70 -0.77 14.05 14 20 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 14 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 14 22 H 0.35 13.09 7.90 -89.70 -0.71 12.38 14 23 H 0.34 13.32 8.75 -89.69 -0.79 12.54 14 Total: -1.00 -63.37 239.83 0.69 -62.69 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.22 Total: 12.16 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 1.69 Total: -24.09 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -1.41 Total: -108.72 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 13.27 SS G_CDS: -1.32 Total: 11.95 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -0.08 Total: 1.17 kcal Total: -63.37 0.69 -62.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260882315.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.091 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds