Wall clock time and date at job start Mon Mar 30 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.88921 * 2 1 4 4 C 1.54333 * 110.82768 * 236.48030 * 2 1 3 5 5 C 1.51476 * 105.21873 * 215.43642 * 4 2 1 6 6 N 1.32304 * 130.14810 * 197.18429 * 5 4 2 7 7 C 1.31682 * 122.03151 * 179.97438 * 6 5 4 8 8 C 1.38224 * 120.80610 * 0.03587 * 7 6 5 9 9 C 1.38576 * 118.98679 * 359.97386 * 8 7 6 10 10 C 1.38162 * 109.58892 * 17.20302 * 5 4 2 11 11 C 1.51233 * 109.95474 * 359.96963 * 10 5 4 12 12 C 1.50704 * 110.30987 * 223.85102 * 11 10 5 13 13 H 1.07999 * 119.99657 * 232.75515 * 12 11 10 14 14 C 1.37877 * 120.00019 * 52.74733 * 12 11 10 15 15 N 1.31506 * 120.00463 * 3.75525 * 14 12 11 16 16 Si 1.86805 * 119.99601 * 183.75161 * 14 12 11 17 17 H 1.48500 * 109.47211 * 60.00241 * 16 14 12 18 18 H 1.48506 * 109.46814 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46971 * 299.99824 * 16 14 12 20 20 C 1.53000 * 110.31440 * 101.77344 * 11 10 5 21 21 N 1.46903 * 109.47075 * 63.86433 * 20 11 10 22 22 H 1.08995 * 109.47419 * 296.48382 * 1 2 3 23 23 H 1.09003 * 109.47297 * 56.48860 * 1 2 3 24 24 H 1.09004 * 109.47278 * 176.48415 * 1 2 3 25 25 H 1.08996 * 110.29443 * 96.49672 * 4 2 1 26 26 H 1.09003 * 110.37763 * 334.41516 * 4 2 1 27 27 H 1.08001 * 119.59676 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.50845 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.72005 * 180.02562 * 9 8 7 30 30 H 0.96998 * 120.00718 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46709 * 303.86976 * 20 11 10 32 32 H 1.08993 * 109.46915 * 183.87129 * 20 11 10 33 33 H 1.00905 * 110.99387 * 179.97438 * 21 20 11 34 34 H 1.00896 * 111.00450 * 303.95508 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0787 -0.7966 -1.2026 5 6 3.3331 -1.4745 -0.6914 6 7 4.3398 -2.0185 -1.3556 7 6 5.3645 -2.5717 -0.7406 8 6 5.4273 -2.6059 0.6397 9 6 4.3928 -2.0471 1.3732 10 6 3.3301 -1.4734 0.6902 11 6 2.0786 -0.7967 1.2030 12 6 2.4154 0.1339 2.3396 13 1 1.8881 0.0523 3.2785 14 6 3.3969 1.0891 2.1807 15 7 3.9876 1.2375 1.0152 16 14 3.8874 2.1727 3.6212 17 1 4.3897 1.3234 4.7310 18 1 4.9555 3.1114 3.1932 19 1 2.7066 2.9450 4.0842 20 6 1.0580 -1.8418 1.6580 21 7 1.6026 -2.5953 2.7954 22 1 -0.3634 0.4582 0.9198 23 1 -0.3634 0.5674 -0.8569 24 1 -0.3634 -1.0258 -0.0630 25 1 2.3212 -0.1222 -2.0238 26 1 1.3522 -1.5413 -1.5279 27 1 6.1654 -3.0040 -1.3220 28 1 6.2698 -3.0612 1.1391 29 1 4.4134 -2.0580 2.4529 30 1 4.6779 1.9098 0.9033 31 1 0.8478 -2.5261 0.8361 32 1 0.1372 -1.3429 1.9600 33 1 0.9465 -3.2921 3.1149 34 1 2.4898 -3.0144 2.5601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260923134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:13 Heat of formation + Delta-G solvation = 32.696900 kcal Electronic energy + Delta-G solvation = -17113.916332 eV Core-core repulsion = 14625.191926 eV Total energy + Delta-G solvation = -2488.724406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91881 -36.77331 -33.18802 -32.35594 -31.03341 -30.06401 -27.68184 -25.79268 -24.25856 -22.77234 -21.29423 -20.41700 -18.40282 -16.52901 -15.39631 -15.34673 -14.83150 -14.56158 -14.17849 -13.92683 -13.29421 -12.72149 -12.60048 -12.18558 -11.95478 -11.87718 -11.66777 -11.09353 -10.94024 -10.72593 -10.69571 -10.26693 -10.08910 -9.82024 -9.47193 -9.07982 -8.68973 -8.33647 -8.15997 -7.83846 -7.50258 -5.94351 -4.01941 2.20059 2.44986 3.33750 3.39254 3.42301 4.45503 4.81941 5.02966 5.24804 5.46753 5.70818 5.71756 5.93892 6.03303 6.08109 6.16023 6.23228 6.27679 6.35592 6.42746 6.59124 6.60581 6.75400 6.79515 6.87861 7.07895 7.30454 7.37585 7.55127 7.67768 7.82819 7.93134 8.05530 8.18697 8.43974 8.99037 9.04491 9.61135 11.06924 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.013870 C = 0.011589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.244684 B = 2018.199193 C = 2415.420546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.057 4.057 5 C 0.109 3.891 6 N -0.494 5.494 7 C 0.065 3.935 8 C -0.188 4.188 9 C -0.065 4.065 10 C -0.040 4.040 11 C 0.108 3.892 12 C -0.485 4.485 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.085 3.915 21 N -0.836 5.836 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.259 0.741 31 H -0.001 1.001 32 H 0.069 0.931 33 H 0.320 0.680 34 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 -5.800 -0.940 6.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.123 0.877 4 C -0.095 4.095 5 C -0.028 4.028 6 N -0.203 5.203 7 C -0.092 4.092 8 C -0.208 4.208 9 C -0.091 4.091 10 C -0.043 4.043 11 C 0.106 3.894 12 C -0.523 4.523 13 H 0.084 0.916 14 C -0.139 4.139 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.045 4.045 21 N -0.365 5.365 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.542 -4.967 -1.573 5.797 hybrid contribution 0.745 -0.117 1.011 1.261 sum -1.797 -5.083 -0.562 5.421 Atomic orbital electron populations 1.21814 0.96819 1.00040 1.00734 1.21961 0.92813 1.02081 0.92818 0.87735 1.20974 0.91795 0.97468 0.99234 1.21732 0.93924 0.95087 0.92095 1.66650 1.01380 1.09875 1.42395 1.22097 0.96053 0.99181 0.91880 1.21833 0.99693 1.03653 0.95640 1.20931 0.92425 0.95723 1.00015 1.21642 0.97082 0.91409 0.94146 1.17784 0.86961 0.90769 0.93852 1.20860 1.19395 1.14085 0.97966 0.91599 1.24961 0.96413 0.97177 0.95341 1.69937 1.25577 1.34042 1.22108 0.86719 0.78069 0.80351 0.83200 1.20387 1.21746 1.20423 1.21857 0.98335 0.94769 0.89560 1.58662 1.07147 1.31668 1.39008 0.92364 0.94216 0.93874 0.91793 0.92026 0.84656 0.86614 0.85949 0.93109 0.98261 0.91314 0.86959 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.15 0.30 -2.13 16 2 C -0.08 -1.65 2.70 -89.21 -0.24 -1.89 16 3 H 0.10 2.60 6.40 -51.93 -0.33 2.26 16 4 C -0.06 -1.18 6.31 -26.80 -0.17 -1.35 16 5 C 0.11 2.50 7.32 -82.04 -0.60 1.90 16 6 N -0.49 -11.10 10.35 -9.19 -0.10 -11.20 16 7 C 0.07 1.30 11.18 -17.62 -0.20 1.10 16 8 C -0.19 -3.65 10.12 -39.46 -0.40 -4.05 16 9 C -0.07 -1.41 8.56 -39.27 -0.34 -1.75 16 10 C -0.04 -0.92 2.97 -104.20 -0.31 -1.23 16 11 C 0.11 2.41 0.38 -155.83 -0.06 2.35 16 12 C -0.48 -12.21 7.53 -34.44 -0.26 -12.47 16 13 H 0.07 1.72 7.75 -52.49 -0.41 1.31 16 14 C 0.06 1.64 4.98 -17.82 -0.09 1.56 16 15 N -0.88 -23.79 10.60 55.43 0.59 -23.20 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.09 1.66 4.48 -3.82 -0.02 1.64 16 21 N -0.84 -15.21 9.17 -10.37 -0.10 -15.31 16 22 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.70 6.62 -51.93 -0.34 0.35 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.12 2.62 7.69 -52.49 -0.40 2.21 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.00 -0.01 7.78 -51.93 -0.40 -0.42 16 32 H 0.07 1.31 6.74 -51.93 -0.35 0.96 16 33 H 0.32 4.81 9.08 -39.29 -0.36 4.45 16 34 H 0.33 6.10 6.60 -39.29 -0.26 5.84 16 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -28.17 270.48 -7.42 -35.60 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.50 Total: 10.45 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.38 Total: -16.33 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.40 Total: -49.71 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.17 -7.42 -35.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.294 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds