Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.88921 * 2 1 4 4 C 1.54333 * 110.82768 * 236.48030 * 2 1 3 5 5 C 1.51476 * 105.21873 * 215.43642 * 4 2 1 6 6 N 1.32304 * 130.14810 * 197.18429 * 5 4 2 7 7 C 1.31682 * 122.03151 * 179.97438 * 6 5 4 8 8 C 1.38224 * 120.80610 * 0.03587 * 7 6 5 9 9 C 1.38576 * 118.98679 * 359.97386 * 8 7 6 10 10 C 1.38162 * 109.58892 * 17.20302 * 5 4 2 11 11 C 1.51233 * 109.95474 * 359.96963 * 10 5 4 12 12 C 1.50704 * 110.30987 * 223.85102 * 11 10 5 13 13 H 1.07999 * 119.99657 * 232.75515 * 12 11 10 14 14 C 1.37877 * 120.00019 * 52.74733 * 12 11 10 15 15 N 1.31506 * 120.00463 * 3.75525 * 14 12 11 16 16 Si 1.86805 * 119.99601 * 183.75161 * 14 12 11 17 17 H 1.48500 * 109.47211 * 60.00241 * 16 14 12 18 18 H 1.48506 * 109.46814 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46971 * 299.99824 * 16 14 12 20 20 C 1.53000 * 110.31440 * 101.77344 * 11 10 5 21 21 N 1.46903 * 109.47075 * 63.86433 * 20 11 10 22 22 H 1.08995 * 109.47419 * 296.48382 * 1 2 3 23 23 H 1.09003 * 109.47297 * 56.48860 * 1 2 3 24 24 H 1.09004 * 109.47278 * 176.48415 * 1 2 3 25 25 H 1.08996 * 110.29443 * 96.49672 * 4 2 1 26 26 H 1.09003 * 110.37763 * 334.41516 * 4 2 1 27 27 H 1.08001 * 119.59676 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.50845 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.72005 * 180.02562 * 9 8 7 30 30 H 0.96998 * 120.00718 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46709 * 303.86976 * 20 11 10 32 32 H 1.08993 * 109.46915 * 183.87129 * 20 11 10 33 33 H 1.00905 * 110.99387 * 179.97438 * 21 20 11 34 34 H 1.00896 * 111.00450 * 303.95508 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0787 -0.7966 -1.2026 5 6 3.3331 -1.4745 -0.6914 6 7 4.3398 -2.0185 -1.3556 7 6 5.3645 -2.5717 -0.7406 8 6 5.4273 -2.6059 0.6397 9 6 4.3928 -2.0471 1.3732 10 6 3.3301 -1.4734 0.6902 11 6 2.0786 -0.7967 1.2030 12 6 2.4154 0.1339 2.3396 13 1 1.8881 0.0523 3.2785 14 6 3.3969 1.0891 2.1807 15 7 3.9876 1.2375 1.0152 16 14 3.8874 2.1727 3.6212 17 1 4.3897 1.3234 4.7310 18 1 4.9555 3.1114 3.1932 19 1 2.7066 2.9450 4.0842 20 6 1.0580 -1.8418 1.6580 21 7 1.6026 -2.5953 2.7954 22 1 -0.3634 0.4582 0.9198 23 1 -0.3634 0.5674 -0.8569 24 1 -0.3634 -1.0258 -0.0630 25 1 2.3212 -0.1222 -2.0238 26 1 1.3522 -1.5413 -1.5279 27 1 6.1654 -3.0040 -1.3220 28 1 6.2698 -3.0612 1.1391 29 1 4.4134 -2.0580 2.4529 30 1 4.6779 1.9098 0.9033 31 1 0.8478 -2.5261 0.8361 32 1 0.1372 -1.3429 1.9600 33 1 0.9465 -3.2921 3.1149 34 1 2.4898 -3.0144 2.5601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = 14.734745 kcal Electronic energy + Delta-G solvation = -17114.695229 eV Core-core repulsion = 14625.191926 eV Total energy + Delta-G solvation = -2489.503303 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54846 -38.39166 -34.73120 -34.24260 -32.68154 -31.61482 -29.40533 -27.35174 -26.06403 -24.36239 -22.93326 -22.03215 -20.11120 -18.31774 -16.99714 -16.94005 -16.64694 -16.11279 -15.89135 -15.55360 -14.87188 -14.32271 -14.13917 -14.00559 -13.51938 -13.42870 -13.19731 -12.83207 -12.67952 -12.58737 -12.36740 -11.90115 -11.80609 -11.51898 -11.21641 -10.82851 -10.41219 -10.14773 -9.83822 -9.33591 -9.11794 -7.90917 -6.02342 0.59188 0.81220 1.43877 1.46553 1.51384 2.51099 3.18968 3.31754 3.47980 4.00578 4.10410 4.23462 4.40555 4.48261 4.53049 4.62698 4.68580 4.70625 4.82078 4.91128 5.04489 5.09360 5.17143 5.23315 5.38177 5.49137 5.68564 5.73458 5.85542 5.90977 6.07059 6.23027 6.45350 6.62651 6.87259 7.02758 7.40015 7.61917 9.05905 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.013870 C = 0.011589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.244684 B = 2018.199193 C = 2415.420546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.065 0.935 4 C -0.052 4.052 5 C 0.083 3.917 6 N -0.513 5.513 7 C 0.059 3.941 8 C -0.182 4.182 9 C -0.082 4.082 10 C -0.055 4.055 11 C 0.100 3.900 12 C -0.482 4.482 13 H 0.053 0.947 14 C 0.027 3.973 15 N -0.898 5.898 16 Si 0.932 3.068 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.276 1.276 20 C 0.092 3.908 21 N -0.844 5.844 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.119 0.881 30 H 0.249 0.751 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.339 0.661 34 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -6.992 -0.880 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.090 4.090 5 C -0.054 4.054 6 N -0.223 5.223 7 C -0.098 4.098 8 C -0.201 4.201 9 C -0.108 4.108 10 C -0.057 4.057 11 C 0.099 3.901 12 C -0.520 4.520 13 H 0.071 0.929 14 C -0.173 4.173 15 N -0.536 5.536 16 Si 0.760 3.240 17 H -0.205 1.205 18 H -0.224 1.224 19 H -0.202 1.202 20 C -0.039 4.039 21 N -0.375 5.375 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.189 0.811 28 H 0.170 0.830 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.733 -6.168 -1.496 6.910 hybrid contribution 0.840 0.208 1.020 1.338 sum -1.893 -5.960 -0.476 6.272 Atomic orbital electron populations 1.21734 0.94019 1.01547 1.01287 1.21821 0.95120 0.99796 0.92944 0.91655 1.20963 0.91835 0.97636 0.98579 1.22040 0.94861 0.96019 0.92459 1.66699 1.02016 1.10536 1.43063 1.22764 0.96111 0.98296 0.92650 1.22209 0.99868 1.02413 0.95632 1.21104 0.93143 0.96458 1.00077 1.21703 0.97548 0.92101 0.94381 1.17859 0.87936 0.91130 0.93221 1.21032 1.18541 1.14196 0.98248 0.92883 1.25414 0.96913 0.98322 0.96623 1.70081 1.25982 1.34406 1.23178 0.86031 0.77510 0.79116 0.81328 1.20457 1.22433 1.20182 1.21722 0.97505 0.94399 0.90243 1.58589 1.07728 1.32545 1.38588 0.92900 0.92465 0.91966 0.92493 0.89777 0.81066 0.82988 0.86343 0.94163 0.97255 0.90963 0.84840 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.95 71.98 0.57 -3.78 16 2 C -0.08 -3.27 2.70 -9.88 -0.03 -3.30 16 3 H 0.07 3.30 6.40 -2.39 -0.02 3.29 16 4 C -0.05 -2.14 6.31 30.55 0.19 -1.94 16 5 C 0.08 3.74 7.32 42.72 0.31 4.05 16 6 N -0.51 -22.44 10.35 -182.99 -1.89 -24.33 16 7 C 0.06 2.21 11.18 84.71 0.95 3.16 16 8 C -0.18 -6.64 10.12 22.35 0.23 -6.41 16 9 C -0.08 -3.46 8.56 22.47 0.19 -3.27 16 10 C -0.05 -2.46 2.97 -19.59 -0.06 -2.52 16 11 C 0.10 4.40 0.38 -53.04 -0.02 4.38 16 12 C -0.48 -24.24 7.53 25.60 0.19 -24.05 16 13 H 0.05 2.76 7.75 -2.91 -0.02 2.73 16 14 C 0.03 1.39 4.98 84.66 0.42 1.82 16 15 N -0.90 -49.27 10.60 21.45 0.23 -49.04 16 16 Si 0.93 43.21 29.54 68.60 2.03 45.23 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.09 3.43 4.48 86.30 0.39 3.81 16 21 N -0.84 -29.40 9.17 -186.72 -1.71 -31.12 16 22 H 0.05 1.82 7.81 -2.39 -0.02 1.80 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.85 6.62 -2.38 -0.02 1.83 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.08 2.99 7.84 -2.39 -0.02 2.97 16 27 H 0.17 5.02 8.06 -2.91 -0.02 4.99 16 28 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.12 4.99 7.69 -2.91 -0.02 4.97 16 30 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.01 0.33 7.78 -2.39 -0.02 0.31 16 32 H 0.07 2.62 6.74 -2.39 -0.02 2.60 16 33 H 0.34 9.49 9.08 -89.69 -0.81 8.68 16 34 H 0.33 11.76 6.60 -89.70 -0.59 11.17 16 Total: -1.00 -59.68 270.48 1.70 -57.98 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.29 Total: 29.32 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.34 Total: -28.04 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -3.38 Total: -104.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -59.68 1.70 -57.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.714 kcal (2) G-P(sol) polarization free energy of solvation -59.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds