Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.72986 * 2 1 4 4 C 1.54337 * 110.99797 * 123.52836 * 2 1 3 5 5 C 1.51472 * 105.21510 * 144.64937 * 4 2 1 6 6 N 1.32297 * 130.14687 * 162.78275 * 5 4 2 7 7 C 1.31682 * 122.03368 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.80271 * 0.28115 * 7 6 5 9 9 C 1.38571 * 118.98732 * 359.43069 * 8 7 6 10 10 C 1.38169 * 109.58832 * 342.78251 * 5 4 2 11 11 C 1.51219 * 109.95522 * 0.04980 * 10 5 4 12 12 C 1.50709 * 110.31214 * 136.14120 * 11 10 5 13 13 H 1.07995 * 120.00052 * 125.05968 * 12 11 10 14 14 C 1.37875 * 119.99617 * 305.05058 * 12 11 10 15 15 N 1.31510 * 120.00094 * 4.92569 * 14 12 11 16 16 Si 1.86798 * 119.99893 * 184.92037 * 14 12 11 17 17 H 1.48505 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47247 * 120.00215 * 16 14 12 19 19 H 1.48501 * 109.47193 * 240.00386 * 16 14 12 20 20 C 1.53001 * 110.31169 * 258.21386 * 11 10 5 21 21 N 1.46895 * 109.47401 * 299.88503 * 20 11 10 22 22 H 1.09004 * 109.46665 * 183.41039 * 1 2 3 23 23 H 1.09000 * 109.46968 * 303.40506 * 1 2 3 24 24 H 1.09001 * 109.47415 * 63.40732 * 1 2 3 25 25 H 1.08998 * 110.28875 * 25.71287 * 4 2 1 26 26 H 1.09003 * 110.29501 * 263.58887 * 4 2 1 27 27 H 1.07999 * 119.60030 * 180.02562 * 7 6 5 28 28 H 1.08002 * 120.50588 * 179.72573 * 8 7 6 29 29 H 1.07995 * 120.72521 * 180.26238 * 9 8 7 30 30 H 0.97005 * 119.99998 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46971 * 59.89036 * 20 11 10 32 32 H 1.08999 * 109.47354 * 179.88527 * 20 11 10 33 33 H 1.00902 * 111.00328 * 174.42030 * 21 20 11 34 34 H 1.00902 * 111.00219 * 298.37608 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0830 -0.7959 1.2011 5 6 3.3385 -1.4699 0.6873 6 7 4.3481 -2.0109 1.3493 7 6 5.3727 -2.5618 0.7322 8 6 5.4355 -2.5907 -0.6484 9 6 4.3950 -2.0402 -1.3796 10 6 3.3328 -1.4681 -0.6944 11 6 2.0788 -0.7944 -1.2045 12 6 2.4111 0.1378 -2.3411 13 1 1.9072 0.0327 -3.2905 14 6 3.3582 1.1248 -2.1687 15 7 4.0406 1.1925 -1.0466 16 14 3.6720 2.3659 -3.5291 17 1 2.7800 2.0748 -4.6802 18 1 3.3964 3.7347 -3.0236 19 1 5.0888 2.2750 -3.9648 20 6 1.0602 -1.8419 -1.6584 21 7 1.6393 -2.6524 -2.7380 22 1 -0.3633 -1.0259 0.0611 23 1 -0.3633 0.5658 0.8579 24 1 -0.3634 0.4600 -0.9189 25 1 1.3585 -1.5428 1.5254 26 1 2.3251 -0.1213 2.0224 27 1 6.1758 -2.9925 1.3118 28 1 6.2802 -3.0398 -1.1495 29 1 4.4131 -2.0513 -2.4593 30 1 4.7073 1.8867 -0.9255 31 1 0.8029 -2.4866 -0.8180 32 1 0.1620 -1.3421 -2.0211 33 1 1.0221 -3.4088 -2.9933 34 1 1.8619 -2.0812 -3.5395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260923136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = 30.368506 kcal Electronic energy + Delta-G solvation = -17099.688524 eV Core-core repulsion = 14610.863151 eV Total energy + Delta-G solvation = -2488.825372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74211 -36.70628 -33.09431 -32.41461 -30.93861 -29.94559 -27.61405 -25.71138 -24.38251 -22.62415 -21.14464 -20.32663 -18.47069 -16.41028 -15.29393 -15.09622 -14.96135 -14.46959 -14.41261 -13.82766 -13.22545 -12.73262 -12.36178 -12.00976 -11.89742 -11.65169 -11.55330 -11.28962 -11.09283 -10.83403 -10.66125 -10.29476 -10.15733 -9.90882 -9.36651 -9.03235 -8.56859 -8.30421 -8.10264 -7.75681 -7.37385 -6.02301 -4.15546 2.40794 2.70629 3.23409 3.33439 3.34100 4.35343 5.02915 5.12689 5.21642 5.51564 5.77683 5.87136 5.96620 6.11189 6.13636 6.26625 6.34432 6.37241 6.39409 6.55958 6.61910 6.65214 6.81512 6.89214 6.94518 7.15380 7.38525 7.47607 7.61645 7.70869 7.82503 8.01982 8.08231 8.21492 8.34938 8.83202 9.20065 9.48984 10.96772 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.013616 C = 0.011519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.460765 B = 2055.913309 C = 2430.247749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 H 0.097 0.903 4 C -0.055 4.055 5 C 0.098 3.902 6 N -0.497 5.497 7 C 0.061 3.939 8 C -0.192 4.192 9 C -0.039 4.039 10 C -0.014 4.014 11 C 0.108 3.892 12 C -0.509 4.509 13 H 0.055 0.945 14 C 0.071 3.929 15 N -0.867 5.867 16 Si 0.886 3.114 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.085 3.915 21 N -0.844 5.844 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.260 0.740 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.319 0.681 34 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -4.348 -0.392 5.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.115 0.885 4 C -0.093 4.093 5 C -0.039 4.039 6 N -0.206 5.206 7 C -0.096 4.096 8 C -0.212 4.212 9 C -0.065 4.065 10 C -0.016 4.016 11 C 0.106 3.894 12 C -0.547 4.547 13 H 0.074 0.926 14 C -0.133 4.133 15 N -0.503 5.503 16 Si 0.714 3.286 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.045 4.045 21 N -0.373 5.373 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.129 0.871 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.797 -4.374 1.139 5.315 hybrid contribution -0.196 1.133 -2.180 2.465 sum -2.993 -3.241 -1.041 4.533 Atomic orbital electron populations 1.21802 0.96843 1.00125 1.00564 1.21916 0.92805 1.01587 0.93378 0.88483 1.20917 0.92098 0.97425 0.98852 1.21620 0.93961 0.96015 0.92264 1.66592 1.01423 1.10185 1.42396 1.22001 0.96102 0.99680 0.91842 1.21793 0.99752 1.04058 0.95601 1.20732 0.91731 0.94292 0.99696 1.21243 0.96152 0.90752 0.93468 1.17730 0.87752 0.90280 0.93592 1.20862 1.22415 1.14149 0.97285 0.92634 1.24922 0.95480 0.97498 0.95404 1.69989 1.22949 1.32866 1.24461 0.86640 0.77989 0.81605 0.82379 1.19900 1.21098 1.21184 1.21794 0.95487 0.94285 0.92964 1.58659 1.49622 1.15165 1.13870 0.93755 0.94230 0.92622 0.92067 0.92008 0.84986 0.87023 0.86490 0.92955 0.93570 0.96039 0.87054 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.00 37.16 0.30 -2.10 16 2 C -0.08 -1.65 2.71 -89.20 -0.24 -1.90 16 3 H 0.10 2.39 6.52 -51.93 -0.34 2.05 16 4 C -0.05 -1.16 6.32 -26.80 -0.17 -1.33 16 5 C 0.10 2.33 7.32 -82.04 -0.60 1.73 16 6 N -0.50 -11.63 10.35 -9.19 -0.10 -11.72 16 7 C 0.06 1.29 11.18 -17.62 -0.20 1.09 16 8 C -0.19 -3.98 10.12 -39.46 -0.40 -4.38 16 9 C -0.04 -0.89 9.57 -39.27 -0.38 -1.26 16 10 C -0.01 -0.32 2.99 -104.20 -0.31 -0.63 16 11 C 0.11 2.40 0.37 -155.84 -0.06 2.34 16 12 C -0.51 -12.39 7.31 -34.44 -0.25 -12.64 16 13 H 0.06 1.34 7.13 -52.49 -0.37 0.97 16 14 C 0.07 1.80 4.90 -17.82 -0.09 1.71 16 15 N -0.87 -23.20 10.71 55.43 0.59 -22.61 16 16 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 C 0.09 1.64 4.43 -3.83 -0.02 1.62 16 21 N -0.84 -14.98 8.88 -10.37 -0.09 -15.07 16 22 H 0.04 0.72 6.56 -51.93 -0.34 0.38 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 25 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 29 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.88 7.60 -51.93 -0.39 0.48 16 32 H 0.02 0.40 7.00 -51.93 -0.36 0.04 16 33 H 0.32 4.71 9.08 -39.29 -0.36 4.35 16 34 H 0.34 6.23 7.76 -39.29 -0.30 5.92 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -27.81 272.13 -7.46 -35.27 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.54 Total: 10.64 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.41 Total: -15.75 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.41 Total: -49.40 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.81 -7.46 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.641 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds