Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.72986 * 2 1 4 4 C 1.54337 * 110.99797 * 123.52836 * 2 1 3 5 5 C 1.51472 * 105.21510 * 144.64937 * 4 2 1 6 6 N 1.32297 * 130.14687 * 162.78275 * 5 4 2 7 7 C 1.31682 * 122.03368 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.80271 * 0.28115 * 7 6 5 9 9 C 1.38571 * 118.98732 * 359.43069 * 8 7 6 10 10 C 1.38169 * 109.58832 * 342.78251 * 5 4 2 11 11 C 1.51219 * 109.95522 * 0.04980 * 10 5 4 12 12 C 1.50709 * 110.31214 * 136.14120 * 11 10 5 13 13 H 1.07995 * 120.00052 * 125.05968 * 12 11 10 14 14 C 1.37875 * 119.99617 * 305.05058 * 12 11 10 15 15 N 1.31510 * 120.00094 * 4.92569 * 14 12 11 16 16 Si 1.86798 * 119.99893 * 184.92037 * 14 12 11 17 17 H 1.48505 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47247 * 120.00215 * 16 14 12 19 19 H 1.48501 * 109.47193 * 240.00386 * 16 14 12 20 20 C 1.53001 * 110.31169 * 258.21386 * 11 10 5 21 21 N 1.46895 * 109.47401 * 299.88503 * 20 11 10 22 22 H 1.09004 * 109.46665 * 183.41039 * 1 2 3 23 23 H 1.09000 * 109.46968 * 303.40506 * 1 2 3 24 24 H 1.09001 * 109.47415 * 63.40732 * 1 2 3 25 25 H 1.08998 * 110.28875 * 25.71287 * 4 2 1 26 26 H 1.09003 * 110.29501 * 263.58887 * 4 2 1 27 27 H 1.07999 * 119.60030 * 180.02562 * 7 6 5 28 28 H 1.08002 * 120.50588 * 179.72573 * 8 7 6 29 29 H 1.07995 * 120.72521 * 180.26238 * 9 8 7 30 30 H 0.97005 * 119.99998 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46971 * 59.89036 * 20 11 10 32 32 H 1.08999 * 109.47354 * 179.88527 * 20 11 10 33 33 H 1.00902 * 111.00328 * 174.42030 * 21 20 11 34 34 H 1.00902 * 111.00219 * 298.37608 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0830 -0.7959 1.2011 5 6 3.3385 -1.4699 0.6873 6 7 4.3481 -2.0109 1.3493 7 6 5.3727 -2.5618 0.7322 8 6 5.4355 -2.5907 -0.6484 9 6 4.3950 -2.0402 -1.3796 10 6 3.3328 -1.4681 -0.6944 11 6 2.0788 -0.7944 -1.2045 12 6 2.4111 0.1378 -2.3411 13 1 1.9072 0.0327 -3.2905 14 6 3.3582 1.1248 -2.1687 15 7 4.0406 1.1925 -1.0466 16 14 3.6720 2.3659 -3.5291 17 1 2.7800 2.0748 -4.6802 18 1 3.3964 3.7347 -3.0236 19 1 5.0888 2.2750 -3.9648 20 6 1.0602 -1.8419 -1.6584 21 7 1.6393 -2.6524 -2.7380 22 1 -0.3633 -1.0259 0.0611 23 1 -0.3633 0.5658 0.8579 24 1 -0.3634 0.4600 -0.9189 25 1 1.3585 -1.5428 1.5254 26 1 2.3251 -0.1213 2.0224 27 1 6.1758 -2.9925 1.3118 28 1 6.2802 -3.0398 -1.1495 29 1 4.4131 -2.0513 -2.4593 30 1 4.7073 1.8867 -0.9255 31 1 0.8029 -2.4866 -0.8180 32 1 0.1620 -1.3421 -2.0211 33 1 1.0221 -3.4088 -2.9933 34 1 1.8619 -2.0812 -3.5395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = 12.797208 kcal Electronic energy + Delta-G solvation = -17100.450472 eV Core-core repulsion = 14610.863151 eV Total energy + Delta-G solvation = -2489.587321 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42000 -38.35734 -34.64974 -34.25073 -32.64583 -31.53502 -29.33247 -27.31399 -26.14097 -24.24013 -22.83668 -21.99005 -20.18967 -18.18590 -16.98791 -16.75389 -16.64888 -16.08910 -16.02920 -15.53093 -14.79357 -14.39107 -14.05930 -13.64820 -13.43364 -13.30261 -13.16950 -12.93792 -12.82168 -12.60094 -12.41182 -11.91766 -11.84377 -11.60236 -11.04068 -10.81353 -10.40686 -10.04993 -9.79898 -9.23765 -9.05858 -7.93984 -6.10638 0.71759 0.99117 1.40269 1.46495 1.52507 2.47029 3.25505 3.35706 3.55374 4.06130 4.15623 4.32028 4.40575 4.52890 4.60751 4.68647 4.75276 4.81740 4.84111 4.97098 5.05598 5.14347 5.19997 5.29321 5.38941 5.53066 5.69183 5.77261 5.80562 5.96315 6.10080 6.34754 6.44433 6.58988 6.94742 6.95513 7.49758 7.55450 9.01772 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.013616 C = 0.011519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.460765 B = 2055.913309 C = 2430.247749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 H 0.059 0.941 4 C -0.051 4.051 5 C 0.071 3.929 6 N -0.516 5.516 7 C 0.053 3.947 8 C -0.190 4.190 9 C -0.059 4.059 10 C -0.027 4.027 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.055 0.945 14 C 0.031 3.969 15 N -0.892 5.892 16 Si 0.935 3.065 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.294 1.294 20 C 0.093 3.907 21 N -0.848 5.848 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.251 0.749 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.338 0.662 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -5.316 -0.712 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.089 4.089 5 C -0.065 4.065 6 N -0.226 5.226 7 C -0.104 4.104 8 C -0.210 4.210 9 C -0.085 4.085 10 C -0.029 4.029 11 C 0.098 3.902 12 C -0.542 4.542 13 H 0.073 0.927 14 C -0.169 4.169 15 N -0.529 5.529 16 Si 0.763 3.237 17 H -0.190 1.190 18 H -0.217 1.217 19 H -0.221 1.221 20 C -0.038 4.038 21 N -0.379 5.379 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.163 0.837 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.150 0.850 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.384 -5.356 0.801 6.386 hybrid contribution 0.024 1.384 -2.094 2.510 sum -3.360 -3.972 -1.294 5.361 Atomic orbital electron populations 1.21724 0.93908 1.01602 1.01264 1.21798 0.95198 0.99311 0.93303 0.92253 1.20931 0.91927 0.97611 0.98426 1.22018 0.94927 0.96843 0.92744 1.66643 1.02073 1.10830 1.43078 1.22636 0.96280 0.98972 0.92521 1.22160 1.00023 1.03049 0.95722 1.20908 0.92636 0.95287 0.99696 1.21412 0.96747 0.91060 0.93687 1.17848 0.88389 0.90756 0.93207 1.21134 1.21370 1.13905 0.97814 0.92677 1.25438 0.95847 0.98991 0.96674 1.70133 1.23657 1.33224 1.25905 0.85868 0.77288 0.79736 0.80797 1.19007 1.21706 1.22063 1.21652 0.94807 0.93807 0.93546 1.58570 1.50318 1.15473 1.13510 0.91937 0.92527 0.92851 0.89881 0.92667 0.81496 0.83685 0.87007 0.93976 0.93124 0.95164 0.84957 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.00 71.98 0.58 -3.68 16 2 C -0.08 -3.22 2.71 -9.88 -0.03 -3.25 16 3 H 0.06 2.96 6.52 -2.38 -0.02 2.95 16 4 C -0.05 -2.13 6.32 30.55 0.19 -1.94 16 5 C 0.07 3.33 7.32 42.72 0.31 3.64 16 6 N -0.52 -23.72 10.35 -182.98 -1.89 -25.62 16 7 C 0.05 2.14 11.18 84.71 0.95 3.09 16 8 C -0.19 -7.55 10.12 22.35 0.23 -7.32 16 9 C -0.06 -2.67 9.57 22.47 0.22 -2.45 16 10 C -0.03 -1.24 2.99 -19.59 -0.06 -1.29 16 11 C 0.10 4.34 0.37 -53.04 -0.02 4.32 16 12 C -0.50 -24.28 7.31 25.60 0.19 -24.10 16 13 H 0.06 2.61 7.13 -2.91 -0.02 2.58 16 14 C 0.03 1.59 4.90 84.65 0.41 2.01 16 15 N -0.89 -48.46 10.71 21.45 0.23 -48.23 16 16 Si 0.93 41.60 29.54 68.60 2.03 43.63 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 20 C 0.09 3.39 4.43 86.30 0.38 3.78 16 21 N -0.85 -28.59 8.88 -186.73 -1.66 -30.25 16 22 H 0.06 1.85 6.56 -2.38 -0.02 1.83 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.78 7.85 -2.39 -0.02 1.77 16 25 H 0.08 3.03 7.84 -2.39 -0.02 3.01 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.17 5.36 8.06 -2.91 -0.02 5.34 16 28 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.25 13.62 8.31 -92.70 -0.77 12.85 16 31 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 32 H 0.03 1.05 7.00 -2.39 -0.02 1.04 16 33 H 0.34 9.19 9.08 -89.69 -0.81 8.37 16 34 H 0.34 11.87 7.76 -89.69 -0.70 11.17 16 Total: -1.00 -58.73 272.13 1.66 -57.07 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.39 Total: 30.60 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.35 Total: -27.20 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -3.32 Total: -104.10 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -58.73 1.66 -57.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.864 kcal (2) G-P(sol) polarization free energy of solvation -58.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds