Wall clock time and date at job start Mon Mar 30 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88324 * 2 1 4 4 C 1.54338 * 110.82133 * 123.51689 * 2 1 3 5 5 C 1.51476 * 105.21123 * 91.88305 * 4 2 1 6 6 N 1.32295 * 130.14316 * 197.18230 * 5 4 2 7 7 C 1.31689 * 122.03047 * 180.02562 * 6 5 4 8 8 C 1.38226 * 120.80695 * 0.03235 * 7 6 5 9 9 C 1.38581 * 118.98499 * 359.97438 * 8 7 6 10 10 C 1.38171 * 109.59267 * 17.20520 * 5 4 2 11 11 C 1.51226 * 109.95498 * 359.96286 * 10 5 4 12 12 C 1.50695 * 110.31743 * 223.85185 * 11 10 5 13 13 H 1.08007 * 119.99575 * 1.01224 * 12 11 10 14 14 C 1.37871 * 120.00265 * 181.01273 * 12 11 10 15 15 N 1.31519 * 120.00277 * 192.98720 * 14 12 11 16 16 Si 1.86795 * 120.00031 * 12.99153 * 14 12 11 17 17 H 1.48497 * 109.47338 * 84.43794 * 16 14 12 18 18 H 1.48505 * 109.47395 * 204.43788 * 16 14 12 19 19 H 1.48500 * 109.47299 * 324.43766 * 16 14 12 20 20 C 1.53005 * 110.31089 * 101.77260 * 11 10 5 21 21 N 1.46893 * 109.47113 * 55.00792 * 20 11 10 22 22 H 1.09002 * 109.47259 * 175.66043 * 1 2 3 23 23 H 1.09003 * 109.47467 * 295.66495 * 1 2 3 24 24 H 1.09010 * 109.46899 * 55.66082 * 1 2 3 25 25 H 1.08996 * 110.29359 * 332.95114 * 4 2 1 26 26 H 1.09002 * 110.29221 * 210.81214 * 4 2 1 27 27 H 1.08005 * 119.59939 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.50926 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.72342 * 179.97438 * 9 8 7 30 30 H 0.96999 * 120.00423 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47060 * 175.00888 * 20 11 10 32 32 H 1.09001 * 109.47227 * 295.00771 * 20 11 10 33 33 H 1.00894 * 111.00162 * 178.96644 * 21 20 11 34 34 H 1.00901 * 111.00619 * 302.92604 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0786 -0.7966 1.2027 5 6 2.2648 -2.2103 0.6915 6 7 2.4141 -3.3446 1.3557 7 6 2.5667 -4.4991 0.7407 8 6 2.5773 -4.5700 -0.6397 9 6 2.4240 -3.4042 -1.3731 10 6 2.2649 -2.2071 -0.6902 11 6 2.0787 -0.7967 -1.2031 12 6 1.0893 -0.7796 -2.3396 13 1 0.6180 -1.6973 -2.6591 14 6 0.7859 0.4076 -2.9717 15 7 -0.2496 0.4765 -3.7796 16 14 1.8455 1.9181 -2.6806 17 1 3.0176 1.8836 -3.5918 18 1 1.0473 3.1417 -2.9472 19 1 2.3141 1.9301 -1.2716 20 6 3.4190 -0.2156 -1.6580 21 7 4.0301 -1.1116 -2.6488 22 1 -0.3634 -1.0247 -0.0778 23 1 -0.3634 0.4451 0.9263 24 1 -0.3633 0.5798 -0.8486 25 1 1.3620 -0.7828 2.0238 26 1 3.0337 -0.3827 1.5263 27 1 2.6850 -5.4016 1.3221 28 1 2.7031 -5.5193 -1.1390 29 1 2.4284 -3.4271 -2.4528 30 1 -0.4629 1.3116 -4.2246 31 1 3.2568 0.7647 -2.1059 32 1 4.0827 -0.1173 -0.7990 33 1 4.9091 -0.7414 -2.9776 34 1 4.1470 -2.0406 -2.2728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260923139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:16 Heat of formation + Delta-G solvation = 55.478543 kcal Electronic energy + Delta-G solvation = -17096.419583 eV Core-core repulsion = 14608.683064 eV Total energy + Delta-G solvation = -2487.736519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44193 -37.17833 -33.67342 -32.29488 -31.64073 -29.93468 -28.24816 -26.34429 -23.97511 -23.25414 -21.85270 -20.46441 -19.30966 -16.37869 -15.92467 -15.73443 -15.37746 -14.63344 -14.28487 -14.12283 -13.54701 -13.02545 -12.77634 -12.69061 -12.33363 -12.20877 -12.06629 -11.67145 -11.06385 -10.66307 -10.56993 -10.26811 -10.15226 -9.98354 -9.27643 -9.10417 -8.94221 -8.56661 -8.43777 -8.12707 -7.75349 -6.06938 -3.98370 1.67734 1.91464 3.22197 3.31149 3.40311 4.33609 4.40590 4.55378 5.14568 5.24383 5.30150 5.36067 5.58485 5.69225 5.75815 5.83448 5.94266 5.96144 6.07856 6.29530 6.35511 6.37563 6.51681 6.64310 6.71761 6.81838 6.87231 7.13111 7.20088 7.31386 7.43995 7.72626 7.86940 8.07723 8.50193 8.55202 8.96924 9.57489 11.06338 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.030551 B = 0.011563 C = 0.010739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.268557 B = 2420.868382 C = 2606.690945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.065 4.065 5 C 0.102 3.898 6 N -0.490 5.490 7 C 0.078 3.922 8 C -0.184 4.184 9 C -0.061 4.061 10 C -0.084 4.084 11 C 0.084 3.916 12 C -0.474 4.474 13 H 0.074 0.926 14 C 0.082 3.918 15 N -0.893 5.893 16 Si 0.874 3.126 17 H -0.282 1.282 18 H -0.305 1.305 19 H -0.256 1.256 20 C 0.072 3.928 21 N -0.828 5.828 22 H 0.050 0.950 23 H 0.027 0.973 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.002 0.998 33 H 0.324 0.676 34 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -3.808 6.638 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 H 0.098 0.902 4 C -0.103 4.103 5 C -0.035 4.035 6 N -0.199 5.199 7 C -0.079 4.079 8 C -0.204 4.204 9 C -0.086 4.086 10 C -0.086 4.086 11 C 0.083 3.917 12 C -0.512 4.512 13 H 0.092 0.908 14 C -0.119 4.119 15 N -0.531 5.531 16 Si 0.708 3.292 17 H -0.210 1.210 18 H -0.234 1.234 19 H -0.183 1.183 20 C -0.058 4.058 21 N -0.357 5.357 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.135 0.865 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.887 -3.545 6.983 9.798 hybrid contribution 1.415 0.590 -0.313 1.565 sum 7.302 -2.955 6.671 10.322 Atomic orbital electron populations 1.21546 0.93718 1.02140 0.99758 1.22427 0.97282 0.98679 0.93494 0.90152 1.21132 1.01032 0.88945 0.99220 1.21989 0.95960 0.93738 0.91813 1.66772 1.12856 0.98065 1.42192 1.22367 0.98507 0.94989 0.92083 1.22011 1.03948 0.98923 0.95559 1.21241 0.95362 0.90890 1.01139 1.21607 0.95515 0.97027 0.94491 1.18165 0.92787 0.86262 0.94517 1.20407 1.21292 0.95616 1.13857 0.90773 1.24816 0.94240 0.97985 0.94904 1.69917 1.25516 1.26865 1.30816 0.87379 0.80233 0.82681 0.78953 1.20990 1.23408 1.18272 1.22211 0.95704 0.96198 0.91702 1.58538 1.29449 1.05327 1.42406 0.93061 0.95432 0.90715 0.90692 0.90870 0.83709 0.85528 0.84467 0.92747 0.92096 0.97963 0.86468 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.08 37.16 0.30 -2.09 16 2 C -0.10 -2.02 2.11 -89.20 -0.19 -2.21 16 3 H 0.08 1.62 5.36 -51.93 -0.28 1.34 16 4 C -0.07 -1.19 6.30 -26.80 -0.17 -1.35 16 5 C 0.10 2.00 7.32 -82.04 -0.60 1.40 16 6 N -0.49 -9.18 10.35 -9.19 -0.10 -9.27 16 7 C 0.08 1.25 11.18 -17.62 -0.20 1.05 16 8 C -0.18 -2.88 10.12 -39.46 -0.40 -3.28 16 9 C -0.06 -1.12 8.15 -39.27 -0.32 -1.44 16 10 C -0.08 -1.72 4.31 -104.20 -0.45 -2.16 16 11 C 0.08 1.84 0.24 -155.84 -0.04 1.81 16 12 C -0.47 -12.31 6.89 -34.44 -0.24 -12.54 16 13 H 0.07 2.16 7.82 -52.48 -0.41 1.75 16 14 C 0.08 2.22 4.00 -17.82 -0.07 2.15 16 15 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 16 Si 0.87 20.87 23.31 -169.99 -3.96 16.91 16 17 H -0.28 -6.83 7.06 56.52 0.40 -6.43 16 18 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.26 -5.53 4.13 56.52 0.23 -5.30 16 20 C 0.07 1.49 4.98 -3.83 -0.02 1.47 16 21 N -0.83 -15.80 9.34 -10.37 -0.10 -15.89 16 22 H 0.05 1.13 8.05 -51.93 -0.42 0.71 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.74 6.02 -51.92 -0.31 1.43 16 25 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.14 2.55 7.93 -52.49 -0.42 2.14 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.06 1.36 2.07 -51.93 -0.11 1.25 16 32 H 0.00 0.05 8.13 -51.93 -0.42 -0.38 16 33 H 0.32 5.31 9.08 -39.30 -0.36 4.95 16 34 H 0.33 5.86 6.43 -39.29 -0.25 5.61 16 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -29.46 258.47 -6.26 -35.71 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.38 Total: 11.18 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.39 Total: -17.20 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.58 Total: -50.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.96 Total: 16.91 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.46 -6.26 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.193 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds