Wall clock time and date at job start Mon Mar 30 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88324 * 2 1 4 4 C 1.54338 * 110.82133 * 123.51689 * 2 1 3 5 5 C 1.51476 * 105.21123 * 91.88305 * 4 2 1 6 6 N 1.32295 * 130.14316 * 197.18230 * 5 4 2 7 7 C 1.31689 * 122.03047 * 180.02562 * 6 5 4 8 8 C 1.38226 * 120.80695 * 0.03235 * 7 6 5 9 9 C 1.38581 * 118.98499 * 359.97438 * 8 7 6 10 10 C 1.38171 * 109.59267 * 17.20520 * 5 4 2 11 11 C 1.51226 * 109.95498 * 359.96286 * 10 5 4 12 12 C 1.50695 * 110.31743 * 223.85185 * 11 10 5 13 13 H 1.08007 * 119.99575 * 1.01224 * 12 11 10 14 14 C 1.37871 * 120.00265 * 181.01273 * 12 11 10 15 15 N 1.31519 * 120.00277 * 192.98720 * 14 12 11 16 16 Si 1.86795 * 120.00031 * 12.99153 * 14 12 11 17 17 H 1.48497 * 109.47338 * 84.43794 * 16 14 12 18 18 H 1.48505 * 109.47395 * 204.43788 * 16 14 12 19 19 H 1.48500 * 109.47299 * 324.43766 * 16 14 12 20 20 C 1.53005 * 110.31089 * 101.77260 * 11 10 5 21 21 N 1.46893 * 109.47113 * 55.00792 * 20 11 10 22 22 H 1.09002 * 109.47259 * 175.66043 * 1 2 3 23 23 H 1.09003 * 109.47467 * 295.66495 * 1 2 3 24 24 H 1.09010 * 109.46899 * 55.66082 * 1 2 3 25 25 H 1.08996 * 110.29359 * 332.95114 * 4 2 1 26 26 H 1.09002 * 110.29221 * 210.81214 * 4 2 1 27 27 H 1.08005 * 119.59939 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.50926 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.72342 * 179.97438 * 9 8 7 30 30 H 0.96999 * 120.00423 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47060 * 175.00888 * 20 11 10 32 32 H 1.09001 * 109.47227 * 295.00771 * 20 11 10 33 33 H 1.00894 * 111.00162 * 178.96644 * 21 20 11 34 34 H 1.00901 * 111.00619 * 302.92604 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0786 -0.7966 1.2027 5 6 2.2648 -2.2103 0.6915 6 7 2.4141 -3.3446 1.3557 7 6 2.5667 -4.4991 0.7407 8 6 2.5773 -4.5700 -0.6397 9 6 2.4240 -3.4042 -1.3731 10 6 2.2649 -2.2071 -0.6902 11 6 2.0787 -0.7967 -1.2031 12 6 1.0893 -0.7796 -2.3396 13 1 0.6180 -1.6973 -2.6591 14 6 0.7859 0.4076 -2.9717 15 7 -0.2496 0.4765 -3.7796 16 14 1.8455 1.9181 -2.6806 17 1 3.0176 1.8836 -3.5918 18 1 1.0473 3.1417 -2.9472 19 1 2.3141 1.9301 -1.2716 20 6 3.4190 -0.2156 -1.6580 21 7 4.0301 -1.1116 -2.6488 22 1 -0.3634 -1.0247 -0.0778 23 1 -0.3634 0.4451 0.9263 24 1 -0.3633 0.5798 -0.8486 25 1 1.3620 -0.7828 2.0238 26 1 3.0337 -0.3827 1.5263 27 1 2.6850 -5.4016 1.3221 28 1 2.7031 -5.5193 -1.1390 29 1 2.4284 -3.4271 -2.4528 30 1 -0.4629 1.3116 -4.2246 31 1 3.2568 0.7647 -2.1059 32 1 4.0827 -0.1173 -0.7990 33 1 4.9091 -0.7414 -2.9776 34 1 4.1470 -2.0406 -2.2728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:16 Heat of formation + Delta-G solvation = 33.693218 kcal Electronic energy + Delta-G solvation = -17097.364266 eV Core-core repulsion = 14608.683064 eV Total energy + Delta-G solvation = -2488.681202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90257 -38.69233 -35.19589 -34.27902 -33.06133 -31.44286 -29.93350 -27.87047 -25.85548 -24.73616 -23.31569 -21.94379 -21.00823 -18.18440 -17.40071 -17.36381 -16.90536 -16.18227 -15.79748 -15.65696 -15.15374 -14.58428 -14.54982 -14.33438 -13.91285 -13.72179 -13.54580 -13.16085 -12.76086 -12.45851 -12.21819 -12.03767 -11.94006 -11.59975 -11.00742 -10.68701 -10.53957 -10.45100 -10.03304 -9.56584 -9.26238 -8.16986 -6.09887 0.32771 0.51001 1.31384 1.38024 1.48310 2.40870 2.96200 3.18014 3.25834 3.72770 3.76600 4.08894 4.17154 4.23181 4.30302 4.39778 4.46295 4.53399 4.55867 4.77185 4.85695 4.96199 5.01024 5.08382 5.13982 5.28725 5.40615 5.51264 5.61651 5.71651 5.86116 5.95107 6.32377 6.48418 6.71604 6.85583 7.16607 7.48985 9.00283 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.030551 B = 0.011563 C = 0.010739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.268557 B = 2420.868382 C = 2606.690945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.058 4.058 5 C 0.090 3.910 6 N -0.503 5.503 7 C 0.082 3.918 8 C -0.172 4.172 9 C -0.074 4.074 10 C -0.113 4.113 11 C 0.080 3.920 12 C -0.456 4.456 13 H 0.026 0.974 14 C 0.032 3.968 15 N -0.947 5.947 16 Si 0.925 3.075 17 H -0.286 1.286 18 H -0.318 1.318 19 H -0.217 1.217 20 C 0.072 3.928 21 N -0.842 5.842 22 H 0.028 0.972 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.125 0.875 30 H 0.259 0.741 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.340 0.660 34 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 -4.565 8.980 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.096 4.096 5 C -0.046 4.046 6 N -0.213 5.213 7 C -0.075 4.075 8 C -0.191 4.191 9 C -0.100 4.100 10 C -0.115 4.115 11 C 0.078 3.922 12 C -0.494 4.494 13 H 0.044 0.956 14 C -0.165 4.165 15 N -0.588 5.588 16 Si 0.756 3.244 17 H -0.214 1.214 18 H -0.248 1.248 19 H -0.141 1.141 20 C -0.059 4.059 21 N -0.373 5.373 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.203 0.797 28 H 0.182 0.818 29 H 0.143 0.857 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.153 0.847 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.903 -4.315 9.354 12.984 hybrid contribution 0.765 0.603 -1.062 1.441 sum 8.668 -3.712 8.292 12.556 Atomic orbital electron populations 1.21448 0.94653 1.00383 1.00097 1.22367 0.96518 0.99104 0.94028 0.89482 1.21080 1.02366 0.87920 0.98194 1.22133 0.96400 0.94715 0.91380 1.66857 1.13413 0.98501 1.42496 1.23099 0.96328 0.95489 0.92630 1.22368 1.01873 0.99292 0.95605 1.21335 0.96061 0.91782 1.00866 1.21548 0.97943 0.96682 0.95304 1.18142 0.92319 0.88372 0.93377 1.20476 1.21040 0.93345 1.14516 0.95610 1.25459 0.95118 1.00965 0.94938 1.70072 1.27979 1.27488 1.33287 0.86550 0.78155 0.78648 0.80998 1.21387 1.24795 1.14118 1.22104 0.95563 0.95511 0.92675 1.58456 1.30659 1.05792 1.42404 0.95267 0.92143 0.93844 0.89333 0.88599 0.79662 0.81823 0.85726 0.93227 0.93519 0.95520 0.84703 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 8.08 71.98 0.58 -3.90 16 2 C -0.10 -3.90 2.11 -9.87 -0.02 -3.93 16 3 H 0.09 3.23 5.36 -2.39 -0.01 3.21 16 4 C -0.06 -1.92 6.30 30.55 0.19 -1.72 16 5 C 0.09 3.31 7.32 42.72 0.31 3.62 16 6 N -0.50 -17.22 10.35 -182.98 -1.89 -19.12 16 7 C 0.08 2.30 11.18 84.71 0.95 3.25 16 8 C -0.17 -4.84 10.12 22.35 0.23 -4.61 16 9 C -0.07 -2.67 8.15 22.47 0.18 -2.49 16 10 C -0.11 -4.45 4.31 -19.59 -0.08 -4.54 16 11 C 0.08 3.41 0.24 -53.04 -0.01 3.40 16 12 C -0.46 -24.37 6.89 25.60 0.18 -24.19 16 13 H 0.03 1.59 7.82 -2.91 -0.02 1.56 16 14 C 0.03 1.76 4.00 84.65 0.34 2.10 16 15 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 16 Si 0.92 43.30 23.31 68.60 1.60 44.90 16 17 H -0.29 -13.45 7.06 99.48 0.70 -12.75 16 18 H -0.32 -15.44 7.11 99.48 0.71 -14.73 16 19 H -0.22 -8.67 4.13 99.48 0.41 -8.26 16 20 C 0.07 2.83 4.98 86.31 0.43 3.26 16 21 N -0.84 -31.00 9.34 -186.73 -1.74 -32.74 16 22 H 0.03 1.28 8.05 -2.39 -0.02 1.27 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.04 2.04 6.02 -2.38 -0.01 2.03 16 25 H 0.09 2.69 7.91 -2.39 -0.02 2.67 16 26 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 27 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.12 4.69 7.93 -2.91 -0.02 4.67 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.05 1.98 2.07 -2.39 0.00 1.98 16 32 H 0.03 0.94 8.13 -2.39 -0.02 0.92 16 33 H 0.34 10.51 9.08 -89.70 -0.81 9.70 16 34 H 0.34 11.57 6.43 -89.69 -0.58 10.99 16 Total: -1.00 -66.11 258.47 0.97 -65.14 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.56 Total: 29.33 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.27 Total: -29.74 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -3.34 Total: -109.63 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.60 Total: 44.90 kcal Total: -66.11 0.97 -65.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.836 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds