Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.88233 * 2 1 4 4 C 1.54339 * 110.82141 * 236.48636 * 2 1 3 5 5 C 1.51484 * 105.21345 * 215.43516 * 4 2 1 6 6 N 1.32290 * 130.13919 * 197.20208 * 5 4 2 7 7 C 1.31691 * 122.03240 * 180.02562 * 6 5 4 8 8 C 1.38229 * 120.79849 * 359.97438 * 7 6 5 9 9 C 1.38570 * 118.99119 * 0.03341 * 8 7 6 10 10 C 1.38169 * 109.58935 * 17.19595 * 5 4 2 11 11 C 1.51222 * 109.95439 * 359.97438 * 10 5 4 12 12 C 1.50702 * 110.31197 * 101.76210 * 11 10 5 13 13 H 1.07998 * 119.99713 * 148.36522 * 12 11 10 14 14 C 1.37869 * 120.00165 * 328.09605 * 12 11 10 15 15 N 1.31517 * 120.00241 * 350.34068 * 14 12 11 16 16 Si 1.86799 * 120.00184 * 170.33412 * 14 12 11 17 17 H 1.48503 * 109.47249 * 89.99924 * 16 14 12 18 18 H 1.48503 * 109.47476 * 210.00055 * 16 14 12 19 19 H 1.48505 * 109.47249 * 330.00363 * 16 14 12 20 20 C 1.53005 * 110.31287 * 223.84049 * 11 10 5 21 21 N 1.46894 * 109.46962 * 292.39856 * 20 11 10 22 22 H 1.09005 * 109.46780 * 290.58525 * 1 2 3 23 23 H 1.08992 * 109.47316 * 50.58950 * 1 2 3 24 24 H 1.08997 * 109.46860 * 170.59202 * 1 2 3 25 25 H 1.08999 * 110.29590 * 96.50175 * 4 2 1 26 26 H 1.09001 * 110.37333 * 334.40844 * 4 2 1 27 27 H 1.08000 * 119.59748 * 180.02562 * 7 6 5 28 28 H 1.08001 * 120.50237 * 179.97438 * 8 7 6 29 29 H 1.07999 * 120.72112 * 180.02562 * 9 8 7 30 30 H 0.96996 * 120.00548 * 180.02562 * 15 14 12 31 31 H 1.08998 * 109.46695 * 52.39651 * 20 11 10 32 32 H 1.08996 * 109.46981 * 172.39661 * 20 11 10 33 33 H 1.00906 * 110.99997 * 181.72692 * 21 20 11 34 34 H 1.00906 * 111.00156 * 305.67874 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7965 -1.2028 5 6 3.3331 -1.4745 -0.6917 6 7 4.3397 -2.0181 -1.3559 7 6 5.3640 -2.5723 -0.7412 8 6 5.4269 -2.6069 0.6392 9 6 4.3923 -2.0485 1.3728 10 6 3.3302 -1.4734 0.6900 11 6 2.0788 -0.7967 1.2029 12 6 1.0736 -1.8261 1.6509 13 1 0.3982 -1.6033 2.4637 14 6 1.0124 -3.0503 1.0197 15 7 1.6920 -3.2539 -0.0877 16 14 -0.0356 -4.4200 1.7374 17 1 -1.4077 -4.3401 1.1748 18 1 0.5644 -5.7343 1.3941 19 1 -0.0970 -4.2744 3.2140 20 6 2.4208 0.1480 2.3569 21 7 2.8646 -0.6366 3.5168 22 1 -0.3633 0.3614 0.9621 23 1 -0.3633 0.6524 -0.7939 24 1 -0.3633 -1.0138 -0.1680 25 1 2.3212 -0.1220 -2.0239 26 1 1.3521 -1.5412 -1.5279 27 1 6.1651 -3.0044 -1.3227 28 1 6.2690 -3.0630 1.1384 29 1 4.4130 -2.0596 2.4525 30 1 1.6488 -4.1150 -0.5320 31 1 3.2184 0.8240 2.0488 32 1 1.5375 0.7270 2.6263 33 1 3.0696 -0.0369 4.3020 34 1 2.1797 -1.3350 3.7644 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 23.133117 kcal Electronic energy + Delta-G solvation = -17296.092559 eV Core-core repulsion = 14806.953436 eV Total energy + Delta-G solvation = -2489.139122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.35460 -38.20554 -34.85543 -33.89817 -32.50372 -31.37883 -29.28674 -27.10173 -26.43368 -23.95720 -22.61793 -21.68783 -20.62393 -18.10360 -17.13021 -16.63440 -16.43956 -15.92920 -15.74487 -15.36752 -14.62937 -14.42717 -14.22607 -13.60775 -13.35172 -13.18218 -13.07333 -12.89723 -12.76889 -12.45100 -12.37414 -11.95399 -11.74644 -11.33298 -11.01573 -10.86358 -10.32551 -9.99054 -9.71639 -9.15113 -9.02563 -7.72566 -6.04027 0.90955 1.07095 1.42310 1.48868 1.52441 2.49144 3.27950 3.50249 3.70205 4.06782 4.25140 4.39118 4.41355 4.62666 4.73702 4.76647 4.86119 4.90709 4.95694 5.07596 5.19220 5.20892 5.40176 5.41048 5.56351 5.60672 5.76318 5.85364 5.89381 5.99951 6.20002 6.40342 6.48876 6.61876 6.96184 6.99561 7.57439 7.69309 8.99811 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.014379 C = 0.013100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.975769 B = 1946.848028 C = 2136.847753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.084 4.084 3 H 0.061 0.939 4 C -0.038 4.038 5 C 0.161 3.839 6 N -0.533 5.533 7 C 0.056 3.944 8 C -0.207 4.207 9 C -0.087 4.087 10 C -0.056 4.056 11 C 0.096 3.904 12 C -0.487 4.487 13 H 0.057 0.943 14 C 0.037 3.963 15 N -0.877 5.877 16 Si 0.930 3.070 17 H -0.285 1.285 18 H -0.304 1.304 19 H -0.269 1.269 20 C 0.089 3.911 21 N -0.844 5.844 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.246 0.754 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.336 0.664 34 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 4.926 3.379 6.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.077 4.077 5 C 0.023 3.977 6 N -0.244 5.244 7 C -0.099 4.099 8 C -0.227 4.227 9 C -0.113 4.113 10 C -0.058 4.058 11 C 0.095 3.905 12 C -0.525 4.525 13 H 0.075 0.925 14 C -0.164 4.164 15 N -0.515 5.515 16 Si 0.759 3.241 17 H -0.211 1.211 18 H -0.231 1.231 19 H -0.193 1.193 20 C -0.042 4.042 21 N -0.375 5.375 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.148 0.852 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.124 4.549 1.879 5.361 hybrid contribution -1.321 -1.059 1.459 2.235 sum 0.803 3.490 3.338 4.896 Atomic orbital electron populations 1.21362 0.94002 1.00477 0.99837 1.21990 0.96644 0.96444 0.95356 0.92106 1.20860 0.92927 0.96883 0.96983 1.21568 0.91660 0.92258 0.92204 1.66641 1.02751 1.11889 1.43080 1.22513 0.96202 0.98599 0.92617 1.22024 1.00924 1.04184 0.95536 1.21261 0.93103 0.96102 1.00792 1.21273 0.94252 0.95635 0.94626 1.17978 0.89531 0.91964 0.91032 1.20740 1.16993 0.98104 1.16654 0.92493 1.25347 0.96386 0.99865 0.94833 1.70197 1.42002 1.22546 1.16728 0.86009 0.79025 0.79818 0.79292 1.21101 1.23142 1.19318 1.21622 0.96281 0.94273 0.92038 1.58626 1.51616 1.18715 1.08502 0.93199 0.93603 0.93975 0.93474 0.90435 0.82562 0.84300 0.84911 0.94370 0.93486 0.96109 0.85212 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.74 8.22 71.98 0.59 -3.14 16 2 C -0.08 -3.41 3.08 -9.88 -0.03 -3.44 16 3 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 4 C -0.04 -1.72 5.67 30.55 0.17 -1.55 16 5 C 0.16 7.76 5.40 42.72 0.23 7.99 16 6 N -0.53 -25.49 10.35 -182.97 -1.89 -27.38 16 7 C 0.06 2.35 11.18 84.71 0.95 3.30 16 8 C -0.21 -8.34 10.12 22.35 0.23 -8.12 16 9 C -0.09 -3.84 9.62 22.47 0.22 -3.62 16 10 C -0.06 -2.57 3.44 -19.59 -0.07 -2.64 16 11 C 0.10 4.11 0.54 -53.04 -0.03 4.08 16 12 C -0.49 -22.46 4.87 25.60 0.12 -22.33 16 13 H 0.06 2.60 7.66 -2.91 -0.02 2.58 16 14 C 0.04 1.80 4.86 84.65 0.41 2.21 16 15 N -0.88 -46.04 7.69 21.44 0.16 -45.88 16 16 Si 0.93 41.21 29.55 68.60 2.03 43.24 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 C 0.09 3.25 5.66 86.31 0.49 3.74 16 21 N -0.84 -28.31 7.73 -186.73 -1.44 -29.75 16 22 H 0.05 1.76 8.07 -2.38 -0.02 1.74 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.79 6.85 -2.39 -0.02 1.78 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 3.83 6.46 -2.39 -0.02 3.81 16 27 H 0.16 5.42 8.06 -2.91 -0.02 5.40 16 28 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.13 5.62 6.67 -2.91 -0.02 5.60 16 30 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.34 9.06 9.08 -89.69 -0.81 8.25 16 34 H 0.35 12.32 7.56 -89.69 -0.68 11.65 16 Total: -1.00 -55.32 266.57 1.76 -53.56 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.38 Total: 29.73 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.28 Total: -23.53 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.17 Total: -103.01 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -55.32 1.76 -53.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.694 kcal (2) G-P(sol) polarization free energy of solvation -55.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds