Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.88353 * 2 1 4 4 C 1.54369 * 110.81993 * 236.48071 * 2 1 3 5 5 C 1.51220 * 105.11793 * 215.47795 * 4 2 1 6 6 C 1.38740 * 130.69210 * 197.13485 * 5 4 2 7 7 C 1.38572 * 118.55609 * 179.97438 * 6 5 4 8 8 C 1.38231 * 118.99328 * 0.02562 * 7 6 5 9 9 N 1.31690 * 120.79844 * 0.02562 * 8 7 6 10 10 C 1.32294 * 122.03290 * 0.02562 * 9 8 7 11 11 C 1.51474 * 130.14759 * 179.97438 * 10 9 8 12 12 C 1.50706 * 110.29483 * 43.87960 * 11 10 9 13 13 H 1.08000 * 120.00125 * 119.37747 * 12 11 10 14 14 C 1.37879 * 119.99687 * 299.38106 * 12 11 10 15 15 N 1.31516 * 120.00362 * 353.93298 * 14 12 11 16 16 Si 1.86803 * 119.99842 * 173.93599 * 14 12 11 17 17 H 1.48504 * 109.47074 * 59.99960 * 16 14 12 18 18 H 1.48501 * 109.47134 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47187 * 299.99844 * 16 14 12 20 20 C 1.53001 * 110.29334 * 281.75299 * 11 10 9 21 21 N 1.46905 * 109.46867 * 307.11255 * 20 11 10 22 22 H 1.09004 * 109.47036 * 296.48172 * 1 2 3 23 23 H 1.08996 * 109.47143 * 56.48517 * 1 2 3 24 24 H 1.09004 * 109.46866 * 176.48855 * 1 2 3 25 25 H 1.08996 * 110.31635 * 334.39178 * 4 2 1 26 26 H 1.09007 * 110.30791 * 96.57311 * 4 2 1 27 27 H 1.08000 * 120.72080 * 0.02562 * 6 5 4 28 28 H 1.08007 * 120.51024 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.60100 * 180.02562 * 8 7 6 30 30 H 0.96997 * 120.00186 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47651 * 67.11642 * 20 11 10 32 32 H 1.09000 * 109.46735 * 187.11938 * 20 11 10 33 33 H 1.00890 * 110.99834 * 66.14805 * 21 20 11 34 34 H 1.00897 * 110.99504 * 190.09927 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0787 -0.7968 -1.2029 5 6 3.3301 -1.4734 -0.6901 6 6 4.3922 -2.0484 -1.3730 7 6 5.4267 -2.6069 -0.6395 8 6 5.3641 -2.5722 0.7410 9 7 4.3395 -2.0187 1.3558 10 6 3.3323 -1.4760 0.6917 11 6 2.0773 -0.7990 1.2027 12 6 2.4121 0.1344 2.3376 13 1 2.2000 1.1897 2.2493 14 6 2.9893 -0.3589 3.4885 15 7 3.1384 -1.6561 3.6455 16 14 3.5593 0.8153 4.8248 17 1 2.4024 1.6071 5.3146 18 1 4.1399 0.0399 5.9504 19 1 4.5883 1.7322 4.2721 20 6 1.0578 -1.8451 1.6578 21 7 0.8355 -2.8148 0.5769 22 1 -0.3633 0.4583 0.9199 23 1 -0.3633 0.5674 -0.8568 24 1 -0.3633 -1.0258 -0.0629 25 1 1.3517 -1.5414 -1.5270 26 1 2.3226 -0.1224 -2.0239 27 1 4.4126 -2.0597 -2.4527 28 1 6.2692 -3.0625 -1.1387 29 1 6.1652 -3.0042 1.3223 30 1 3.5448 -2.0031 4.4550 31 1 1.4371 -2.3632 2.5385 32 1 0.1168 -1.3526 1.9031 33 1 1.6687 -3.3552 0.3991 34 1 0.0524 -3.4158 0.7857 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 44.999124 kcal Electronic energy + Delta-G solvation = -17137.523372 eV Core-core repulsion = 14649.332431 eV Total energy + Delta-G solvation = -2488.190941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88772 -36.67859 -33.04378 -32.05706 -31.05411 -29.97797 -27.79407 -25.63828 -23.88655 -22.64502 -21.32964 -20.45273 -18.11829 -16.65367 -15.46518 -15.23853 -14.63250 -14.53547 -14.07454 -13.88742 -13.17641 -12.47840 -12.37964 -12.21602 -11.81835 -11.61865 -11.54773 -11.13640 -10.87900 -10.75873 -10.46619 -10.26926 -10.06616 -9.68862 -9.42989 -8.93803 -8.65862 -8.29548 -7.83410 -7.73919 -7.34536 -5.83548 -3.93354 2.19141 2.35079 3.37603 3.42012 3.45500 4.50975 4.95994 5.23590 5.37568 5.57620 5.70269 5.73608 5.82209 5.92983 6.06005 6.16854 6.25628 6.42071 6.61443 6.62823 6.72220 6.83025 6.85985 6.97028 7.06418 7.13148 7.25362 7.35305 7.48635 7.68640 7.91004 8.06422 8.10654 8.35632 8.51115 8.99454 9.45607 9.69288 11.15098 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.013837 C = 0.010366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.738471 B = 2023.025317 C = 2700.562232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.062 4.062 5 C -0.168 4.168 6 C -0.087 4.087 7 C -0.209 4.209 8 C 0.077 3.923 9 N -0.417 5.417 10 C 0.190 3.810 11 C 0.130 3.870 12 C -0.533 4.533 13 H 0.056 0.944 14 C 0.083 3.917 15 N -0.832 5.832 16 Si 0.883 3.117 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.068 3.932 21 N -0.854 5.854 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.257 0.743 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.327 0.673 34 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -2.076 -6.981 7.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.099 4.099 5 C -0.170 4.170 6 C -0.113 4.113 7 C -0.230 4.230 8 C -0.082 4.082 9 N -0.123 5.123 10 C 0.051 3.949 11 C 0.129 3.871 12 C -0.571 4.571 13 H 0.075 0.925 14 C -0.124 4.124 15 N -0.465 5.465 16 Si 0.711 3.289 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.206 1.206 20 C -0.062 4.062 21 N -0.381 5.381 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.145 -1.585 -6.352 6.646 hybrid contribution 1.025 -0.172 0.489 1.149 sum -0.119 -1.758 -5.863 6.122 Atomic orbital electron populations 1.21811 0.95507 1.02397 0.99448 1.21769 0.95107 0.97842 0.94575 0.92056 1.20965 0.93583 0.97897 0.97470 1.21707 0.96741 1.01145 0.97448 1.20790 0.93594 0.97977 0.98918 1.21798 0.99941 1.05069 0.96155 1.22738 0.96767 0.97454 0.91248 1.67443 0.99137 1.05690 1.40049 1.22740 0.94264 0.89199 0.88682 1.17706 0.86096 0.91122 0.92206 1.20810 1.43536 0.93403 0.99306 0.92534 1.24857 0.95147 0.94722 0.97704 1.69852 1.40136 1.10934 1.25599 0.86827 0.79024 0.81357 0.81661 1.20529 1.21478 1.20573 1.22056 0.97789 0.93459 0.92860 1.59128 1.08954 1.21950 1.48031 0.93239 0.95128 0.90589 0.89633 0.93480 0.87085 0.86793 0.84867 0.93243 0.91171 0.92766 0.86236 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.90 37.16 0.29 -2.14 16 2 C -0.07 -1.53 2.99 -89.16 -0.27 -1.80 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.92 16 4 C -0.06 -1.16 5.65 -26.91 -0.15 -1.32 16 5 C -0.17 -3.50 5.66 -104.20 -0.59 -4.09 16 6 C -0.09 -1.61 10.17 -39.27 -0.40 -2.01 16 7 C -0.21 -3.79 10.12 -39.46 -0.40 -4.19 16 8 C 0.08 1.59 11.18 -17.61 -0.20 1.40 16 9 N -0.42 -10.29 8.09 -9.19 -0.07 -10.37 16 10 C 0.19 4.52 4.69 -82.04 -0.39 4.13 16 11 C 0.13 3.09 0.42 -155.69 -0.06 3.02 16 12 C -0.53 -14.25 7.99 -34.44 -0.28 -14.53 16 13 H 0.06 1.52 7.64 -52.49 -0.40 1.12 16 14 C 0.08 2.24 4.97 -17.82 -0.09 2.15 16 15 N -0.83 -22.73 9.13 55.43 0.51 -22.23 16 16 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.07 1.53 4.95 -3.82 -0.02 1.51 16 21 N -0.85 -16.01 6.35 -10.37 -0.07 -16.08 16 22 H 0.05 0.92 7.80 -51.93 -0.41 0.52 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.36 5.72 -51.93 -0.30 1.06 16 25 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.07 1.80 5.93 -51.93 -0.31 1.49 16 32 H 0.05 1.19 6.51 -51.93 -0.34 0.86 16 33 H 0.33 6.53 7.81 -39.30 -0.31 6.22 16 34 H 0.32 5.19 9.08 -39.29 -0.36 4.83 16 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -28.10 265.33 -7.64 -35.74 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.44 Total: 10.48 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.54 Total: -17.87 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.37 Total: -48.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.10 -7.64 -35.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.736 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds