Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.72526 * 2 1 4 4 C 1.54369 * 110.82305 * 123.40461 * 2 1 3 5 5 C 1.51539 * 104.96387 * 92.27169 * 4 2 1 6 6 C 1.38735 * 130.60647 * 197.04575 * 5 4 2 7 7 C 1.38586 * 118.55536 * 179.79676 * 6 5 4 8 8 C 1.38229 * 118.98745 * 359.97438 * 7 6 5 9 9 N 1.31694 * 120.80146 * 0.02562 * 8 7 6 10 10 C 1.32294 * 122.03127 * 359.97438 * 9 8 7 11 11 C 1.51482 * 130.14286 * 179.97438 * 10 9 8 12 12 C 1.50696 * 110.37632 * 281.79640 * 11 10 9 13 13 H 1.08001 * 120.00278 * 28.84793 * 12 11 10 14 14 C 1.37877 * 120.00092 * 208.85601 * 12 11 10 15 15 N 1.31510 * 120.00291 * 165.23068 * 14 12 11 16 16 Si 1.86805 * 119.99811 * 345.23235 * 14 12 11 17 17 H 1.48496 * 109.47013 * 95.79077 * 16 14 12 18 18 H 1.48496 * 109.47005 * 215.79106 * 16 14 12 19 19 H 1.48504 * 109.46971 * 335.79107 * 16 14 12 20 20 C 1.52999 * 110.29196 * 43.88497 * 11 10 9 21 21 N 1.46897 * 109.47299 * 291.42840 * 20 11 10 22 22 H 1.09000 * 109.47011 * 180.69969 * 1 2 3 23 23 H 1.09004 * 109.47544 * 300.69964 * 1 2 3 24 24 H 1.08997 * 109.47469 * 60.70068 * 1 2 3 25 25 H 1.08998 * 110.31192 * 211.03876 * 4 2 1 26 26 H 1.09000 * 110.31645 * 333.22458 * 4 2 1 27 27 H 1.07997 * 120.72699 * 359.77359 * 6 5 4 28 28 H 1.07993 * 120.50754 * 179.97438 * 7 6 5 29 29 H 1.07993 * 119.59909 * 180.02562 * 8 7 6 30 30 H 0.97007 * 119.99927 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.47277 * 51.43168 * 20 11 10 32 32 H 1.09001 * 109.46474 * 171.42999 * 20 11 10 33 33 H 1.00896 * 111.00221 * 184.79110 * 21 20 11 34 34 H 1.00899 * 110.99703 * 308.74146 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0787 -0.7944 1.2045 5 6 2.2721 -2.2056 0.6872 6 6 2.4351 -3.4028 1.3690 7 6 2.5906 -4.5676 0.6344 8 6 2.5773 -4.4958 -0.7459 9 7 2.4201 -3.3413 -1.3597 10 6 2.2687 -2.2079 -0.6945 11 6 2.0774 -0.7943 -1.2043 12 6 3.3941 -0.2165 -1.6554 13 1 4.1698 -0.8680 -2.0298 14 6 3.6085 1.1439 -1.5900 15 7 4.8281 1.6235 -1.7006 16 14 2.1667 2.3059 -1.3442 17 1 2.0343 2.6322 0.0984 18 1 2.3998 3.5538 -2.1146 19 1 0.9198 1.6554 -1.8210 20 6 1.0692 -0.7772 -2.3550 21 7 1.6508 -1.4472 -3.5257 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3634 0.5247 0.8836 24 1 -0.3634 0.5029 -0.8962 25 1 3.0319 -0.3777 1.5300 26 1 1.3603 -0.7833 2.0241 27 1 2.4411 -3.4265 2.4487 28 1 2.7202 -5.5168 1.1328 29 1 2.6972 -5.3975 -1.3281 30 1 4.9788 2.5807 -1.6549 31 1 0.1620 -1.2992 -2.0510 32 1 0.8266 0.2545 -2.6100 33 1 1.0359 -1.3810 -4.3228 34 1 2.5628 -1.0729 -3.7405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = 56.039051 kcal Electronic energy + Delta-G solvation = -17083.543687 eV Core-core repulsion = 14595.831473 eV Total energy + Delta-G solvation = -2487.712214 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27151 -37.14796 -33.49113 -32.25892 -31.44756 -30.26413 -27.97938 -26.41968 -24.08685 -22.81187 -21.86338 -20.58225 -19.31553 -16.53281 -15.91458 -15.40992 -15.16518 -14.62158 -14.40683 -13.69642 -13.48342 -13.04176 -12.82983 -12.58764 -12.47655 -12.05829 -11.80389 -11.50223 -11.40339 -10.96344 -10.75979 -10.45383 -10.05106 -9.82907 -9.32443 -9.15225 -8.98149 -8.56083 -8.30821 -7.87088 -7.35204 -6.21623 -4.18152 1.89044 2.03310 3.12888 3.25358 3.32228 4.24872 4.59963 4.79316 5.14756 5.18385 5.34557 5.50616 5.55553 5.66077 5.75591 5.83083 5.88163 6.10199 6.18003 6.28664 6.37637 6.43511 6.44555 6.57227 6.63878 6.70803 6.80555 6.83053 6.98305 7.13169 7.52573 7.62243 8.25668 8.45092 8.61629 8.89176 8.97170 9.39777 10.89172 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.011929 C = 0.011237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.486799 B = 2346.603798 C = 2491.233946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.058 4.058 5 C -0.158 4.158 6 C -0.077 4.077 7 C -0.201 4.201 8 C 0.088 3.912 9 N -0.451 5.451 10 C 0.187 3.813 11 C 0.101 3.899 12 C -0.500 4.500 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.883 5.883 16 Si 0.872 3.128 17 H -0.281 1.281 18 H -0.303 1.303 19 H -0.241 1.241 20 C 0.072 3.928 21 N -0.829 5.829 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.313 0.687 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -5.279 4.532 10.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.096 4.096 5 C -0.161 4.161 6 C -0.103 4.103 7 C -0.221 4.221 8 C -0.070 4.070 9 N -0.158 5.158 10 C 0.049 3.951 11 C 0.099 3.901 12 C -0.538 4.538 13 H 0.098 0.902 14 C -0.129 4.129 15 N -0.519 5.519 16 Si 0.705 3.295 17 H -0.210 1.210 18 H -0.232 1.232 19 H -0.166 1.166 20 C -0.060 4.060 21 N -0.359 5.359 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.486 -5.784 4.044 10.288 hybrid contribution -0.478 1.541 0.818 1.809 sum -7.964 -4.243 4.862 10.250 Atomic orbital electron populations 1.21990 0.95898 1.01449 1.01247 1.22343 0.94396 0.99796 0.96179 0.90181 1.20876 1.01062 0.90504 0.97142 1.21585 1.02092 0.95425 0.96964 1.20872 0.98342 0.91630 0.99451 1.21841 1.05976 0.98304 0.95975 1.22619 0.96821 0.95923 0.91614 1.67043 1.10293 0.97323 1.41098 1.22101 0.89400 0.94041 0.89577 1.18123 0.95793 0.85658 0.90541 1.20581 0.97563 0.92343 1.43333 0.90150 1.25066 0.95287 0.98111 0.94464 1.69950 1.19777 1.13574 1.48628 0.87356 0.85134 0.80105 0.76924 1.21006 1.23209 1.16635 1.22171 0.95960 0.94954 0.92882 1.58666 1.07333 1.63697 1.06216 0.92730 0.93390 0.92053 0.90010 0.91818 0.86331 0.85998 0.83926 0.92458 0.94090 0.95615 0.87749 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.52 37.16 0.28 -2.35 16 2 C -0.11 -2.27 1.86 -89.22 -0.17 -2.44 16 3 H 0.08 1.81 2.06 -51.93 -0.11 1.71 16 4 C -0.06 -1.12 6.33 -26.75 -0.17 -1.29 16 5 C -0.16 -3.19 6.16 -104.05 -0.64 -3.83 16 6 C -0.08 -1.32 10.17 -39.27 -0.40 -1.72 16 7 C -0.20 -3.23 10.12 -39.46 -0.40 -3.63 16 8 C 0.09 1.59 11.18 -17.61 -0.20 1.40 16 9 N -0.45 -9.87 9.91 -9.19 -0.09 -9.97 16 10 C 0.19 4.19 5.86 -82.03 -0.48 3.71 16 11 C 0.10 2.31 0.25 -155.75 -0.04 2.27 16 12 C -0.50 -13.39 7.21 -34.44 -0.25 -13.64 16 13 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 14 C 0.07 2.00 5.32 -17.82 -0.09 1.91 16 15 N -0.88 -25.79 13.96 55.43 0.77 -25.02 16 16 Si 0.87 20.33 23.29 -169.99 -3.96 16.37 16 17 H -0.28 -6.41 6.67 56.52 0.38 -6.04 16 18 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.24 -5.16 3.32 56.52 0.19 -4.97 16 20 C 0.07 1.53 4.36 -3.83 -0.02 1.51 16 21 N -0.83 -17.18 9.09 -10.37 -0.09 -17.28 16 22 H 0.05 0.93 7.76 -51.93 -0.40 0.53 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.08 5.66 -51.93 -0.29 0.79 16 25 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 26 H 0.06 1.03 7.91 -51.93 -0.41 0.62 16 27 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 0.84 6.95 -51.93 -0.36 0.48 16 32 H 0.03 0.56 4.66 -51.93 -0.24 0.32 16 33 H 0.31 5.53 9.08 -39.29 -0.36 5.17 16 34 H 0.35 7.88 7.55 -39.29 -0.30 7.58 16 LS Contribution 258.15 15.07 3.89 3.89 Total: -1.00 -29.85 258.15 -6.43 -36.29 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.38 Total: 13.84 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.57 Total: -18.12 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.59 Total: -52.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -3.96 Total: 16.37 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.85 -6.43 -36.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.325 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds