Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.72526 * 2 1 4 4 C 1.54369 * 110.82305 * 123.40461 * 2 1 3 5 5 C 1.51539 * 104.96387 * 92.27169 * 4 2 1 6 6 C 1.38735 * 130.60647 * 197.04575 * 5 4 2 7 7 C 1.38586 * 118.55536 * 179.79676 * 6 5 4 8 8 C 1.38229 * 118.98745 * 359.97438 * 7 6 5 9 9 N 1.31694 * 120.80146 * 0.02562 * 8 7 6 10 10 C 1.32294 * 122.03127 * 359.97438 * 9 8 7 11 11 C 1.51482 * 130.14286 * 179.97438 * 10 9 8 12 12 C 1.50696 * 110.37632 * 281.79640 * 11 10 9 13 13 H 1.08001 * 120.00278 * 28.84793 * 12 11 10 14 14 C 1.37877 * 120.00092 * 208.85601 * 12 11 10 15 15 N 1.31510 * 120.00291 * 165.23068 * 14 12 11 16 16 Si 1.86805 * 119.99811 * 345.23235 * 14 12 11 17 17 H 1.48496 * 109.47013 * 95.79077 * 16 14 12 18 18 H 1.48496 * 109.47005 * 215.79106 * 16 14 12 19 19 H 1.48504 * 109.46971 * 335.79107 * 16 14 12 20 20 C 1.52999 * 110.29196 * 43.88497 * 11 10 9 21 21 N 1.46897 * 109.47299 * 291.42840 * 20 11 10 22 22 H 1.09000 * 109.47011 * 180.69969 * 1 2 3 23 23 H 1.09004 * 109.47544 * 300.69964 * 1 2 3 24 24 H 1.08997 * 109.47469 * 60.70068 * 1 2 3 25 25 H 1.08998 * 110.31192 * 211.03876 * 4 2 1 26 26 H 1.09000 * 110.31645 * 333.22458 * 4 2 1 27 27 H 1.07997 * 120.72699 * 359.77359 * 6 5 4 28 28 H 1.07993 * 120.50754 * 179.97438 * 7 6 5 29 29 H 1.07993 * 119.59909 * 180.02562 * 8 7 6 30 30 H 0.97007 * 119.99927 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.47277 * 51.43168 * 20 11 10 32 32 H 1.09001 * 109.46474 * 171.42999 * 20 11 10 33 33 H 1.00896 * 111.00221 * 184.79110 * 21 20 11 34 34 H 1.00899 * 110.99703 * 308.74146 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0787 -0.7944 1.2045 5 6 2.2721 -2.2056 0.6872 6 6 2.4351 -3.4028 1.3690 7 6 2.5906 -4.5676 0.6344 8 6 2.5773 -4.4958 -0.7459 9 7 2.4201 -3.3413 -1.3597 10 6 2.2687 -2.2079 -0.6945 11 6 2.0774 -0.7943 -1.2043 12 6 3.3941 -0.2165 -1.6554 13 1 4.1698 -0.8680 -2.0298 14 6 3.6085 1.1439 -1.5900 15 7 4.8281 1.6235 -1.7006 16 14 2.1667 2.3059 -1.3442 17 1 2.0343 2.6322 0.0984 18 1 2.3998 3.5538 -2.1146 19 1 0.9198 1.6554 -1.8210 20 6 1.0692 -0.7772 -2.3550 21 7 1.6508 -1.4472 -3.5257 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3634 0.5247 0.8836 24 1 -0.3634 0.5029 -0.8962 25 1 3.0319 -0.3777 1.5300 26 1 1.3603 -0.7833 2.0241 27 1 2.4411 -3.4265 2.4487 28 1 2.7202 -5.5168 1.1328 29 1 2.6972 -5.3975 -1.3281 30 1 4.9788 2.5807 -1.6549 31 1 0.1620 -1.2992 -2.0510 32 1 0.8266 0.2545 -2.6100 33 1 1.0359 -1.3810 -4.3228 34 1 2.5628 -1.0729 -3.7405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = 33.540729 kcal Electronic energy + Delta-G solvation = -17084.519287 eV Core-core repulsion = 14595.831473 eV Total energy + Delta-G solvation = -2488.687814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78130 -38.68902 -35.11582 -34.28469 -32.91314 -31.68893 -29.73188 -27.90871 -25.90408 -24.37774 -23.34369 -22.08732 -21.03404 -18.32577 -17.58246 -16.99502 -16.71544 -16.16038 -15.95009 -15.43514 -15.09435 -14.78752 -14.42258 -14.13219 -13.87176 -13.58876 -13.30670 -13.03011 -13.00712 -12.67892 -12.35875 -12.08849 -11.79880 -11.43958 -11.11296 -10.97729 -10.53985 -10.40963 -9.79343 -9.37680 -9.02211 -8.31515 -6.31964 0.45688 0.64506 1.26814 1.37015 1.46977 2.28689 2.94362 3.17255 3.48103 3.64764 3.96562 4.04749 4.17193 4.22568 4.36131 4.38242 4.52907 4.62407 4.73795 4.81446 4.86136 4.91580 5.02030 5.03600 5.12037 5.21136 5.31851 5.35575 5.50974 5.62218 5.70984 6.07799 6.31877 6.62623 6.68616 6.99653 7.29724 7.50659 8.83416 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.011929 C = 0.011237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.486799 B = 2346.603798 C = 2491.233946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.062 0.938 4 C -0.056 4.056 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.183 4.183 8 C 0.072 3.928 9 N -0.488 5.488 10 C 0.147 3.853 11 C 0.095 3.905 12 C -0.491 4.491 13 H 0.022 0.978 14 C 0.020 3.980 15 N -0.939 5.939 16 Si 0.935 3.065 17 H -0.269 1.269 18 H -0.316 1.316 19 H -0.210 1.210 20 C 0.078 3.922 21 N -0.834 5.834 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.265 0.735 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.330 0.670 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 -6.537 6.487 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 H 0.079 0.921 4 C -0.094 4.094 5 C -0.176 4.176 6 C -0.102 4.102 7 C -0.202 4.202 8 C -0.086 4.086 9 N -0.195 5.195 10 C 0.010 3.990 11 C 0.093 3.907 12 C -0.529 4.529 13 H 0.040 0.960 14 C -0.178 4.178 15 N -0.578 5.578 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.246 1.246 19 H -0.134 1.134 20 C -0.053 4.053 21 N -0.363 5.363 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.174 0.826 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.142 0.858 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.082 -7.070 5.999 13.697 hybrid contribution 0.433 1.706 0.193 1.770 sum -9.648 -5.364 6.192 12.658 Atomic orbital electron populations 1.21948 0.92991 1.02356 1.02707 1.22334 0.96806 0.98356 0.95835 0.92079 1.20874 1.01058 0.89858 0.97599 1.21794 1.02770 0.96800 0.96273 1.21354 0.96748 0.90693 1.01427 1.22315 1.02884 0.99921 0.95122 1.23207 0.96427 0.95618 0.93332 1.66937 1.11482 0.98388 1.42737 1.22028 0.92195 0.93907 0.90919 1.18093 0.93810 0.86871 0.91926 1.20590 0.98196 0.91718 1.42428 0.96003 1.25881 0.97839 0.99805 0.94265 1.70108 1.22447 1.13830 1.51369 0.86352 0.82749 0.77061 0.77368 1.19644 1.24611 1.13366 1.22093 0.95909 0.94890 0.92417 1.58620 1.07006 1.63574 1.07109 0.92121 0.90464 0.92044 0.91895 0.88148 0.82629 0.81489 0.81269 0.92607 0.92834 0.95830 0.85841 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 7.52 71.98 0.54 -3.99 16 2 C -0.11 -4.58 1.86 -9.89 -0.02 -4.60 16 3 H 0.06 2.67 2.06 -2.38 0.00 2.67 16 4 C -0.06 -2.06 6.33 30.58 0.19 -1.87 16 5 C -0.17 -6.68 6.16 -19.49 -0.12 -6.80 16 6 C -0.08 -2.34 10.17 22.47 0.23 -2.12 16 7 C -0.18 -5.15 10.12 22.35 0.23 -4.93 16 8 C 0.07 2.44 11.18 84.71 0.95 3.39 16 9 N -0.49 -21.17 9.91 -182.97 -1.81 -22.98 16 10 C 0.15 6.51 5.86 42.72 0.25 6.77 16 11 C 0.09 4.33 0.25 -52.99 -0.01 4.32 16 12 C -0.49 -27.48 7.21 25.60 0.18 -27.29 16 13 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 14 C 0.02 1.12 5.32 84.66 0.45 1.57 16 15 N -0.94 -57.70 13.96 21.45 0.30 -57.41 16 16 Si 0.94 42.47 23.29 68.60 1.60 44.07 16 17 H -0.27 -11.58 6.67 99.48 0.66 -10.91 16 18 H -0.32 -14.89 7.11 99.48 0.71 -14.18 16 19 H -0.21 -8.38 3.32 99.48 0.33 -8.05 16 20 C 0.08 3.26 4.36 86.30 0.38 3.64 16 21 N -0.83 -34.79 9.09 -186.73 -1.70 -36.49 16 22 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.92 5.66 -2.39 -0.01 1.91 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.10 2.85 7.91 -2.39 -0.02 2.84 16 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.17 4.59 8.06 -2.91 -0.02 4.56 16 30 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.05 2.10 6.95 -2.39 -0.02 2.09 16 32 H 0.02 0.99 4.66 -2.39 -0.01 0.98 16 33 H 0.33 11.51 9.08 -89.70 -0.81 10.70 16 34 H 0.34 15.80 7.55 -89.70 -0.68 15.12 16 Total: -1.00 -68.95 258.15 0.85 -68.10 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.78 Total: 36.63 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.25 Total: -31.92 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.21 Total: -116.87 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.60 Total: 44.07 kcal Total: -68.95 0.85 -68.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.640 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds