Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.72905 * 2 1 4 4 C 1.54368 * 110.82346 * 123.40870 * 2 1 3 5 5 C 1.51220 * 105.20479 * 92.07961 * 4 2 1 6 6 C 1.38550 * 130.86200 * 197.10988 * 5 4 2 7 7 C 1.38575 * 118.62619 * 180.02562 * 6 5 4 8 8 C 1.38227 * 118.99274 * 0.02562 * 7 6 5 9 9 N 1.31692 * 120.79919 * 0.02562 * 8 7 6 10 10 C 1.32293 * 122.03040 * 0.02562 * 9 8 7 11 11 C 1.51477 * 130.13872 * 179.97438 * 10 9 8 12 12 C 1.50698 * 110.29159 * 43.87838 * 11 10 9 13 13 H 1.07998 * 120.00571 * 358.53214 * 12 11 10 14 14 C 1.37882 * 119.99903 * 178.53124 * 12 11 10 15 15 N 1.31515 * 120.00111 * 1.96752 * 14 12 11 16 16 Si 1.86805 * 120.00018 * 181.96753 * 14 12 11 17 17 H 1.48496 * 109.46687 * 90.00280 * 16 14 12 18 18 H 1.48496 * 109.47128 * 209.99708 * 16 14 12 19 19 H 1.48493 * 109.46862 * 330.00359 * 16 14 12 20 20 C 1.52994 * 110.29607 * 281.74879 * 11 10 9 21 21 N 1.46904 * 109.47461 * 67.60705 * 20 11 10 22 22 H 1.09007 * 109.47027 * 290.27014 * 1 2 3 23 23 H 1.09000 * 109.47101 * 50.26484 * 1 2 3 24 24 H 1.08996 * 109.47105 * 170.27079 * 1 2 3 25 25 H 1.09002 * 110.30910 * 211.04142 * 4 2 1 26 26 H 1.08999 * 110.30994 * 333.12012 * 4 2 1 27 27 H 1.08000 * 120.64812 * 0.04875 * 6 5 4 28 28 H 1.08001 * 120.50636 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.60021 * 179.97438 * 8 7 6 30 30 H 0.96996 * 120.00551 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47316 * 187.60223 * 20 11 10 32 32 H 1.08999 * 109.47369 * 307.60299 * 20 11 10 33 33 H 1.00892 * 110.99699 * 66.50725 * 21 20 11 34 34 H 1.00903 * 111.00079 * 190.46688 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0788 -0.7944 1.2044 5 6 2.2693 -2.2055 0.6952 6 6 2.4301 -3.4011 1.3766 7 6 2.5882 -4.5667 0.6440 8 6 2.5805 -4.4967 -0.7364 9 7 2.4262 -3.3428 -1.3522 10 6 2.2735 -2.2085 -0.6889 11 6 2.0849 -0.7955 -1.2012 12 6 1.0957 -0.7794 -2.3380 13 1 0.6562 -1.7031 -2.6846 14 6 0.7516 0.4146 -2.9356 15 7 1.3155 1.5347 -2.5396 16 14 -0.5157 0.4412 -4.3078 17 1 -1.8698 0.6272 -3.7274 18 1 -0.2168 1.5611 -5.2360 19 1 -0.4678 -0.8437 -5.0507 20 6 3.4247 -0.2119 -1.6540 21 7 3.8938 -0.9301 -2.8466 22 1 -0.3633 0.3561 0.9641 23 1 -0.3633 0.6569 -0.7903 24 1 -0.3633 -1.0128 -0.1737 25 1 3.0319 -0.3777 1.5300 26 1 1.3611 -0.7818 2.0247 27 1 2.4318 -3.4235 2.4564 28 1 2.7155 -5.5155 1.1441 29 1 2.7032 -5.3990 -1.3171 30 1 1.0738 2.3746 -2.9602 31 1 3.2992 0.8443 -1.8921 32 1 4.1569 -0.3194 -0.8537 33 1 3.2866 -0.7589 -3.6339 34 1 4.8476 -0.6839 -3.0652 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 15.952669 kcal Electronic energy + Delta-G solvation = -16994.416984 eV Core-core repulsion = 14504.966494 eV Total energy + Delta-G solvation = -2489.450490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53543 -38.31788 -35.04724 -33.81439 -32.93601 -31.09750 -29.28778 -27.51790 -26.19779 -24.16593 -22.99693 -21.77230 -20.58267 -18.06650 -17.10026 -16.89019 -16.39374 -15.93660 -15.70164 -15.63931 -14.72124 -14.43550 -14.03174 -13.98171 -13.59020 -13.34393 -13.10116 -12.93475 -12.75443 -12.66284 -12.33222 -11.97821 -11.66549 -11.40346 -11.18617 -10.66421 -10.36646 -10.31504 -9.69707 -9.35993 -8.99934 -7.93544 -5.99577 0.51843 0.71415 1.40221 1.45359 1.53459 2.50069 3.20408 3.31242 3.61125 3.91785 4.12086 4.20040 4.30725 4.44646 4.50288 4.62443 4.71620 4.87915 4.93659 5.07187 5.10809 5.16077 5.20024 5.40886 5.44088 5.54072 5.62959 5.70725 5.85466 5.88716 6.02829 6.18461 6.50444 6.73365 6.90285 7.10162 7.59260 7.62376 9.05518 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028279 B = 0.010790 C = 0.010099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.910721 B = 2594.326866 C = 2771.819115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.065 4.065 3 H 0.065 0.935 4 C -0.070 4.070 5 C -0.183 4.183 6 C -0.077 4.077 7 C -0.188 4.188 8 C 0.071 3.929 9 N -0.497 5.497 10 C 0.153 3.847 11 C 0.116 3.884 12 C -0.474 4.474 13 H 0.029 0.971 14 C 0.040 3.960 15 N -0.899 5.899 16 Si 0.924 3.076 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.283 1.283 20 C 0.093 3.907 21 N -0.835 5.835 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.257 0.743 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -5.297 7.689 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.108 4.108 5 C -0.186 4.186 6 C -0.102 4.102 7 C -0.207 4.207 8 C -0.087 4.087 9 N -0.205 5.205 10 C 0.016 3.984 11 C 0.114 3.886 12 C -0.513 4.513 13 H 0.047 0.953 14 C -0.159 4.159 15 N -0.539 5.539 16 Si 0.753 3.247 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.209 1.209 20 C -0.038 4.038 21 N -0.363 5.363 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.172 0.828 28 H 0.182 0.818 29 H 0.183 0.817 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.150 0.850 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.316 -5.754 7.155 9.469 hybrid contribution -0.606 1.050 -0.717 1.408 sum 1.710 -4.704 6.438 8.155 Atomic orbital electron populations 1.21335 0.95427 0.99624 0.99157 1.21619 0.95624 0.98058 0.93196 0.91667 1.21108 1.01283 0.89959 0.98421 1.21898 1.02982 0.97267 0.96405 1.21281 0.96855 0.90805 1.01275 1.22259 1.03537 0.99867 0.95061 1.23143 0.96640 0.95568 0.93317 1.66867 1.11700 0.98657 1.43248 1.22439 0.90577 0.94683 0.90737 1.17879 0.92904 0.84539 0.93266 1.20743 1.22965 0.91684 1.15872 0.95293 1.25163 0.97328 0.95532 0.97870 1.69950 1.43070 0.97953 1.42924 0.86084 0.80877 0.76937 0.80850 1.20852 1.21154 1.20899 1.21503 0.94478 0.96746 0.91099 1.58622 1.05126 1.64422 1.08090 0.93460 0.93849 0.95611 0.90294 0.89804 0.82811 0.81757 0.81714 0.93332 0.93605 0.95812 0.85016 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.22 8.10 71.98 0.58 -3.64 16 2 C -0.07 -2.80 2.29 -9.86 -0.02 -2.82 16 3 H 0.06 2.97 7.69 -2.39 -0.02 2.95 16 4 C -0.07 -2.50 6.30 30.48 0.19 -2.31 16 5 C -0.18 -7.02 6.17 -19.58 -0.12 -7.14 16 6 C -0.08 -2.36 10.16 22.42 0.23 -2.13 16 7 C -0.19 -5.43 10.12 22.35 0.23 -5.20 16 8 C 0.07 2.49 11.18 84.71 0.95 3.43 16 9 N -0.50 -22.37 10.34 -182.80 -1.89 -24.26 16 10 C 0.15 6.92 5.73 42.78 0.25 7.16 16 11 C 0.12 5.47 0.24 -52.96 -0.01 5.45 16 12 C -0.47 -24.91 5.45 25.60 0.14 -24.77 16 13 H 0.03 1.67 7.76 -2.91 -0.02 1.65 16 14 C 0.04 2.06 3.74 84.66 0.32 2.38 16 15 N -0.90 -46.37 10.23 21.45 0.22 -46.15 16 16 Si 0.92 42.93 29.54 68.60 2.03 44.96 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 C 0.09 4.33 5.36 86.30 0.46 4.79 16 21 N -0.83 -37.08 9.24 -186.72 -1.73 -38.80 16 22 H 0.05 1.71 8.07 -2.38 -0.02 1.69 16 23 H 0.04 2.06 6.26 -2.39 -0.01 2.04 16 24 H 0.02 1.14 7.83 -2.39 -0.02 1.12 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.08 2.57 7.86 -2.39 -0.02 2.55 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.17 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.26 12.99 8.31 -92.71 -0.77 12.22 16 31 H 0.05 2.30 6.19 -2.39 -0.01 2.28 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.34 16.06 8.11 -89.70 -0.73 15.33 16 34 H 0.32 12.39 9.08 -89.69 -0.81 11.58 16 Total: -1.00 -59.50 273.10 1.39 -58.11 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.43 Total: 30.94 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.18 Total: -24.78 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.40 Total: -109.22 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -59.50 1.39 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.062 kcal (2) G-P(sol) polarization free energy of solvation -59.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds