Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.88257 * 2 1 4 4 C 1.54366 * 110.82369 * 236.48144 * 2 1 3 5 5 C 1.51223 * 105.11899 * 268.06291 * 4 2 1 6 6 C 1.38740 * 130.68705 * 162.84317 * 5 4 2 7 7 C 1.38577 * 118.55911 * 179.75359 * 6 5 4 8 8 C 1.38233 * 118.98320 * 0.54211 * 7 6 5 9 9 N 1.31688 * 120.80064 * 359.44416 * 8 7 6 10 10 C 1.32295 * 122.03585 * 0.27348 * 9 8 7 11 11 C 1.51481 * 130.14731 * 180.02562 * 10 9 8 12 12 C 1.50702 * 110.29161 * 316.13678 * 11 10 9 13 13 H 1.07991 * 120.00372 * 357.35255 * 12 11 10 14 14 C 1.37880 * 119.99629 * 177.35640 * 12 11 10 15 15 N 1.31507 * 120.00086 * 8.31491 * 14 12 11 16 16 Si 1.86801 * 119.99962 * 188.32144 * 14 12 11 17 17 H 1.48497 * 109.47271 * 59.99296 * 16 14 12 18 18 H 1.48503 * 109.47115 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46713 * 299.99587 * 16 14 12 20 20 C 1.52995 * 110.29545 * 78.16755 * 11 10 9 21 21 N 1.46894 * 109.47408 * 294.78464 * 20 11 10 22 22 H 1.09001 * 109.46979 * 302.81959 * 1 2 3 23 23 H 1.08997 * 109.47034 * 62.81876 * 1 2 3 24 24 H 1.08999 * 109.46741 * 182.82369 * 1 2 3 25 25 H 1.09001 * 110.30731 * 26.97798 * 4 2 1 26 26 H 1.09003 * 110.30937 * 149.05042 * 4 2 1 27 27 H 1.08003 * 120.71937 * 0.02562 * 6 5 4 28 28 H 1.07996 * 120.50857 * 180.29088 * 7 6 5 29 29 H 1.07999 * 119.59530 * 179.72166 * 8 7 6 30 30 H 0.97008 * 120.00507 * 180.02562 * 15 14 12 31 31 H 1.09004 * 109.46649 * 54.78103 * 20 11 10 32 32 H 1.08994 * 109.47171 * 174.77985 * 20 11 10 33 33 H 1.00904 * 111.00156 * 56.04447 * 21 20 11 34 34 H 1.00904 * 111.00334 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0787 -0.7967 -1.2029 5 6 2.2651 -2.2071 -0.6899 6 6 2.4233 -3.4044 -1.3728 7 6 2.5825 -4.5693 -0.6393 8 6 2.5667 -4.4991 0.7411 9 7 2.4141 -3.3446 1.3559 10 6 2.2650 -2.2102 0.6917 11 6 2.0789 -0.7964 1.2028 12 6 1.0882 -0.7773 2.3383 13 1 0.5964 -1.6897 2.6412 14 6 0.8098 0.4052 2.9904 15 7 1.2793 1.5408 2.5219 16 14 -0.2342 0.3942 4.5394 17 1 0.4261 -0.4400 5.5754 18 1 -0.3850 1.7826 5.0445 19 1 -1.5730 -0.1686 4.2299 20 6 3.4190 -0.2163 1.6592 21 7 3.9104 -0.9723 2.8188 22 1 -0.3633 0.5570 0.8636 23 1 -0.3633 0.4694 -0.9142 24 1 -0.3633 -1.0264 0.0506 25 1 1.3617 -0.7842 -2.0238 26 1 3.0327 -0.3816 -1.5282 27 1 2.4268 -3.4274 -2.4526 28 1 2.7128 -5.5180 -1.1386 29 1 2.6853 -5.4015 1.3225 30 1 1.0837 2.3728 2.9808 31 1 4.1416 -0.2879 0.8461 32 1 3.2867 0.8294 1.9366 33 1 3.9801 -1.9561 2.6060 34 1 4.7954 -0.6084 3.1392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961343.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 37.394896 kcal Electronic energy + Delta-G solvation = -16999.824856 eV Core-core repulsion = 14511.304171 eV Total energy + Delta-G solvation = -2488.520685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18060 -36.74496 -33.40976 -31.98747 -31.49435 -29.58367 -27.59653 -25.96767 -24.17642 -22.74876 -21.62408 -20.21167 -18.89977 -16.38026 -15.61737 -15.29459 -14.80974 -14.27848 -14.01383 -13.98815 -13.21570 -12.75846 -12.53024 -12.31311 -12.13818 -11.91504 -11.51507 -11.42302 -10.80528 -10.61195 -10.35116 -10.22560 -9.82536 -9.68660 -9.50001 -9.08309 -8.90251 -8.36308 -8.13494 -7.93451 -7.29145 -5.86865 -3.82385 1.80130 1.93055 3.45405 3.48547 3.56980 4.48280 4.62181 4.87962 5.23399 5.37541 5.45948 5.54449 5.77622 5.81157 5.85456 6.03807 6.15480 6.38276 6.43959 6.56039 6.61950 6.66280 6.79637 6.82893 6.96386 7.06788 7.38942 7.40905 7.50401 7.71326 7.77063 8.13148 8.31943 8.56664 8.66396 8.87933 9.10077 9.76547 11.20500 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.010888 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.052077 B = 2570.935986 C = 2802.900759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.061 4.061 3 H 0.083 0.917 4 C -0.083 4.083 5 C -0.163 4.163 6 C -0.077 4.077 7 C -0.201 4.201 8 C 0.088 3.912 9 N -0.469 5.469 10 C 0.169 3.831 11 C 0.122 3.878 12 C -0.459 4.459 13 H 0.055 0.945 14 C 0.074 3.926 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.283 1.283 20 C 0.087 3.913 21 N -0.825 5.825 22 H 0.079 0.921 23 H 0.018 0.982 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.257 0.743 31 H -0.026 1.026 32 H 0.106 0.894 33 H 0.329 0.671 34 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -5.397 -6.999 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 H 0.101 0.899 4 C -0.120 4.120 5 C -0.165 4.165 6 C -0.103 4.103 7 C -0.221 4.221 8 C -0.069 4.069 9 N -0.177 5.177 10 C 0.032 3.968 11 C 0.121 3.879 12 C -0.497 4.497 13 H 0.073 0.927 14 C -0.126 4.126 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.209 1.209 20 C -0.044 4.044 21 N -0.352 5.352 22 H 0.098 0.902 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.162 0.838 30 H 0.067 0.933 31 H -0.008 1.008 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.369 -4.942 -5.670 7.886 hybrid contribution 0.342 -0.549 -0.797 1.026 sum 2.711 -5.490 -6.467 8.906 Atomic orbital electron populations 1.21465 0.95031 1.00221 0.99834 1.21749 0.96081 0.98714 0.91590 0.89878 1.21258 1.00350 0.90762 0.99671 1.21735 1.01660 0.95958 0.97122 1.20941 0.98080 0.91770 0.99495 1.21841 1.05999 0.98356 0.95917 1.22622 0.96728 0.95864 0.91723 1.67011 1.11406 0.97675 1.41609 1.22840 0.88675 0.95349 0.89928 1.17946 0.94018 0.82049 0.93898 1.20494 1.21266 0.94045 1.13928 0.92705 1.24666 0.95965 0.95394 0.96546 1.69840 1.46488 0.97526 1.39375 0.86725 0.80302 0.76475 0.84775 1.20268 1.21807 1.20912 1.21792 0.93077 1.01055 0.88465 1.58529 1.31801 1.06506 1.38399 0.90220 0.96320 0.94729 0.91902 0.91541 0.86350 0.85948 0.83834 0.93271 1.00794 0.87615 0.85800 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 8.11 37.16 0.30 -2.06 16 2 C -0.06 -1.34 2.28 -89.20 -0.20 -1.54 16 3 H 0.08 1.89 7.70 -51.93 -0.40 1.49 16 4 C -0.08 -1.54 6.30 -26.91 -0.17 -1.71 16 5 C -0.16 -3.19 6.16 -104.21 -0.64 -3.83 16 6 C -0.08 -1.28 10.17 -39.27 -0.40 -1.68 16 7 C -0.20 -3.12 10.12 -39.46 -0.40 -3.52 16 8 C 0.09 1.54 11.18 -17.62 -0.20 1.34 16 9 N -0.47 -10.11 9.38 -9.19 -0.09 -10.20 16 10 C 0.17 3.76 5.33 -82.04 -0.44 3.32 16 11 C 0.12 2.89 0.25 -155.72 -0.04 2.85 16 12 C -0.46 -12.16 6.09 -34.44 -0.21 -12.37 16 13 H 0.05 1.57 7.78 -52.49 -0.41 1.16 16 14 C 0.07 1.97 3.94 -17.82 -0.07 1.90 16 15 N -0.89 -23.55 10.14 55.43 0.56 -22.99 16 16 Si 0.89 21.73 29.55 -169.99 -5.02 16.71 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.09 2.03 5.38 -3.83 -0.02 2.01 16 21 N -0.82 -18.41 9.14 -10.38 -0.09 -18.51 16 22 H 0.08 1.93 5.96 -51.93 -0.31 1.62 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 31 H -0.03 -0.57 8.14 -51.93 -0.42 -1.00 16 32 H 0.11 2.68 6.21 -51.93 -0.32 2.36 16 33 H 0.33 7.27 7.38 -39.29 -0.29 6.98 16 34 H 0.31 6.09 9.08 -39.29 -0.36 5.74 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -28.16 271.85 -7.62 -35.78 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.59 Total: 10.39 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.49 Total: -15.29 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.38 Total: -51.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.16 -7.62 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961343.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds