Wall clock time and date at job start Mon Mar 30 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.72406 * 2 1 4 4 C 1.54418 * 110.81166 * 236.62283 * 2 1 3 5 5 C 1.51058 * 105.15491 * 267.70776 * 4 2 1 6 6 C 1.38622 * 131.52064 * 162.95253 * 5 4 2 7 7 C 1.38207 * 119.09765 * 180.27848 * 6 5 4 8 8 N 1.31889 * 120.71013 * 359.44992 * 7 6 5 9 9 C 1.31835 * 121.78717 * 0.55745 * 8 7 6 10 10 C 1.38340 * 120.75156 * 359.71808 * 9 8 7 11 11 C 1.51185 * 131.26657 * 180.02562 * 10 9 8 12 12 C 1.50706 * 110.29590 * 78.14446 * 11 10 9 13 13 H 1.08002 * 119.99928 * 110.85925 * 12 11 10 14 14 C 1.37875 * 119.99756 * 290.85875 * 12 11 10 15 15 N 1.31510 * 120.00447 * 7.58999 * 14 12 11 16 16 Si 1.86808 * 119.99588 * 187.59129 * 14 12 11 17 17 H 1.48497 * 109.47285 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47035 * 120.00081 * 16 14 12 19 19 H 1.48498 * 109.46882 * 239.99484 * 16 14 12 20 20 C 1.53001 * 110.30019 * 316.01142 * 11 10 9 21 21 N 1.46904 * 109.46998 * 178.13957 * 20 11 10 22 22 H 1.08997 * 109.47289 * 187.64559 * 1 2 3 23 23 H 1.08999 * 109.47166 * 307.64067 * 1 2 3 24 24 H 1.08996 * 109.47271 * 67.64082 * 1 2 3 25 25 H 1.09004 * 110.30950 * 148.78425 * 4 2 1 26 26 H 1.09004 * 110.30196 * 26.62458 * 4 2 1 27 27 H 1.07998 * 120.44785 * 0.02562 * 6 5 4 28 28 H 1.07994 * 119.64600 * 179.70586 * 7 6 5 29 29 H 1.07995 * 119.62355 * 179.69061 * 9 8 7 30 30 H 0.97000 * 120.00325 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.46654 * 298.13348 * 20 11 10 32 32 H 1.08992 * 109.47449 * 58.13662 * 20 11 10 33 33 H 1.00896 * 111.00299 * 52.71655 * 21 20 11 34 34 H 1.00899 * 110.99623 * 176.66773 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9156 1.0195 0.0000 4 6 2.0786 -0.7941 -1.2054 5 6 2.2734 -2.2024 -0.6948 6 6 2.4383 -3.4067 -1.3611 7 6 2.5933 -4.5662 -0.6251 8 7 2.5959 -4.5318 0.6934 9 6 2.4418 -3.4043 1.3590 10 6 2.2758 -2.2049 0.6899 11 6 2.0832 -0.7957 1.2022 12 6 3.4009 -0.2175 1.6501 13 1 3.8571 0.5848 1.0892 14 6 4.0239 -0.7129 2.7758 15 7 3.5488 -1.7840 3.3729 16 14 5.5431 0.1375 3.4531 17 1 5.8720 1.3120 2.6060 18 1 5.2794 0.5887 4.8431 19 1 6.6849 -0.8118 3.4491 20 6 1.0775 -0.7828 2.3552 21 7 0.9377 0.5868 2.8678 22 1 -0.3634 -1.0185 0.1367 23 1 -0.3633 0.6276 0.8137 24 1 -0.3633 0.3909 -0.9504 25 1 3.0302 -0.3753 -1.5328 26 1 1.3586 -0.7846 -2.0238 27 1 2.4415 -3.4391 -2.4405 28 1 2.7176 -5.5100 -1.1350 29 1 2.4446 -3.4173 2.4388 30 1 3.9869 -2.1323 4.1651 31 1 0.1107 -1.1375 1.9979 32 1 1.4315 -1.4351 3.1534 33 1 0.7257 1.2322 2.1218 34 1 0.2387 0.6314 3.5940 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:26 Heat of formation + Delta-G solvation = 20.094070 kcal Electronic energy + Delta-G solvation = -17051.276044 eV Core-core repulsion = 14562.005139 eV Total energy + Delta-G solvation = -2489.270905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.59248 -38.61926 -35.14767 -33.99752 -32.10158 -31.55776 -29.19396 -27.95390 -25.91120 -24.11181 -23.28292 -22.10122 -19.88674 -18.33832 -17.21301 -16.80638 -16.60124 -16.28988 -15.57665 -15.35018 -15.01317 -14.45264 -14.23070 -13.86620 -13.80620 -13.37106 -13.17868 -12.97696 -12.75275 -12.39454 -12.22996 -12.04229 -11.70884 -11.60920 -11.13149 -10.78014 -10.41760 -10.04772 -9.96699 -9.31114 -8.99740 -7.92464 -6.01437 0.62486 0.72380 1.42522 1.47436 1.53617 2.51484 3.24325 3.35218 3.73903 3.88285 4.07275 4.19683 4.33874 4.38470 4.47481 4.64956 4.73931 4.85050 4.85902 4.93403 5.07197 5.11248 5.17271 5.25121 5.35739 5.45600 5.55513 5.66213 5.75217 6.02749 6.10307 6.27835 6.39493 6.79775 6.96926 7.09860 7.42810 7.62794 9.05600 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.013275 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.905396 B = 2108.664631 C = 2700.046838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.062 4.062 5 C -0.092 4.092 6 C -0.171 4.171 7 C 0.054 3.946 8 N -0.525 5.525 9 C 0.099 3.901 10 C -0.096 4.096 11 C 0.110 3.890 12 C -0.482 4.482 13 H 0.046 0.954 14 C 0.040 3.960 15 N -0.894 5.894 16 Si 0.937 3.063 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.297 1.297 20 C 0.085 3.915 21 N -0.833 5.833 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.149 0.851 30 H 0.254 0.746 31 H -0.006 1.006 32 H 0.066 0.934 33 H 0.333 0.667 34 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 1.681 -8.143 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.099 4.099 5 C -0.100 4.100 6 C -0.190 4.190 7 C -0.103 4.103 8 N -0.235 5.235 9 C -0.057 4.057 10 C -0.099 4.099 11 C 0.109 3.891 12 C -0.519 4.519 13 H 0.064 0.936 14 C -0.160 4.160 15 N -0.533 5.533 16 Si 0.766 3.234 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.224 1.224 20 C -0.046 4.046 21 N -0.363 5.363 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.173 0.827 28 H 0.192 0.808 29 H 0.166 0.834 30 H 0.064 0.936 31 H 0.012 0.988 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.946 0.733 -7.293 8.842 hybrid contribution 0.171 0.820 0.142 0.850 sum -4.775 1.553 -7.150 8.737 Atomic orbital electron populations 1.21805 0.94472 1.00638 1.01962 1.21961 0.95367 0.98939 0.94476 0.90634 1.20999 1.01408 0.89356 0.98147 1.21302 0.97324 0.96529 0.94846 1.21757 1.03551 0.91846 1.01864 1.23005 0.98555 0.99082 0.89671 1.67700 1.14438 1.30515 1.10859 1.22691 0.94842 0.87221 1.00937 1.22073 0.95705 0.97440 0.94707 1.17782 0.93810 0.86444 0.91059 1.20954 1.04918 1.16825 1.09222 0.93594 1.25263 0.98828 0.94881 0.97049 1.69783 1.41127 1.21891 1.20489 0.85843 0.80512 0.78627 0.78393 1.19767 1.21301 1.22403 1.21670 0.93943 0.89883 0.99072 1.58505 1.54337 1.07536 1.15945 0.94432 0.92559 0.90891 0.90671 0.88925 0.82740 0.80802 0.83358 0.93637 0.98829 0.91538 0.85275 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 7.76 71.98 0.56 -3.33 16 2 C -0.09 -3.17 2.41 -9.83 -0.02 -3.20 16 3 H 0.08 2.71 7.78 -2.39 -0.02 2.69 16 4 C -0.06 -2.07 6.30 30.44 0.19 -1.88 16 5 C -0.09 -3.60 6.20 -19.60 -0.12 -3.72 16 6 C -0.17 -5.85 10.12 22.35 0.23 -5.62 16 7 C 0.05 1.96 11.19 84.68 0.95 2.91 16 8 N -0.53 -23.63 10.36 -195.75 -2.03 -25.66 16 9 C 0.10 4.81 9.95 84.72 0.84 5.66 16 10 C -0.10 -4.42 4.67 -19.63 -0.09 -4.51 16 11 C 0.11 4.90 0.26 -53.04 -0.01 4.89 16 12 C -0.48 -24.55 7.50 25.60 0.19 -24.36 16 13 H 0.05 2.38 7.64 -2.91 -0.02 2.36 16 14 C 0.04 2.09 5.15 84.65 0.44 2.53 16 15 N -0.89 -48.32 8.16 21.45 0.18 -48.15 16 16 Si 0.94 44.10 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 20 C 0.09 3.72 4.70 86.30 0.41 4.12 16 21 N -0.83 -32.36 9.01 -186.72 -1.68 -34.04 16 22 H 0.04 1.21 7.25 -2.39 -0.02 1.19 16 23 H 0.06 1.58 5.84 -2.39 -0.01 1.57 16 24 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 25 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 26 H 0.09 2.46 7.88 -2.39 -0.02 2.44 16 27 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 28 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.15 7.92 5.98 -2.91 -0.02 7.91 16 30 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 31 H -0.01 -0.25 6.13 -2.39 -0.01 -0.27 16 32 H 0.07 3.40 5.75 -2.39 -0.01 3.38 16 33 H 0.33 11.58 6.42 -89.70 -0.58 11.00 16 34 H 0.33 11.13 9.08 -89.69 -0.81 10.32 16 Total: -1.00 -59.78 265.01 1.78 -58.00 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.26 Total: 30.25 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.55 Total: -26.52 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.54 Total: -107.84 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.78 1.78 -58.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.092 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds