Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.72187 * 2 1 4 4 C 1.54267 * 110.62775 * 123.61089 * 2 1 3 5 5 C 1.51059 * 105.22440 * 92.34100 * 4 2 1 6 6 C 1.38615 * 131.51921 * 197.01285 * 5 4 2 7 7 C 1.38210 * 119.09708 * 179.70359 * 6 5 4 8 8 N 1.31878 * 120.71548 * 0.02562 * 7 6 5 9 9 C 1.31838 * 121.78326 * 359.97438 * 8 7 6 10 10 C 1.38337 * 120.75647 * 0.02562 * 9 8 7 11 11 C 1.51185 * 131.27297 * 180.02562 * 10 9 8 12 12 C 1.50703 * 110.29773 * 43.89859 * 11 10 9 13 13 H 1.08006 * 119.99946 * 2.56901 * 12 11 10 14 14 C 1.37871 * 120.00222 * 182.55817 * 12 11 10 15 15 N 1.31523 * 120.00042 * 352.40573 * 14 12 11 16 16 Si 1.86800 * 120.00320 * 172.39867 * 14 12 11 17 17 H 1.48505 * 109.46915 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47305 * 120.00349 * 16 14 12 19 19 H 1.48494 * 109.47398 * 240.00531 * 16 14 12 20 20 C 1.52998 * 110.29646 * 281.86594 * 11 10 9 21 21 N 1.46895 * 109.47426 * 65.30004 * 20 11 10 22 22 H 1.09000 * 109.47010 * 176.23964 * 1 2 3 23 23 H 1.09002 * 109.46953 * 296.23552 * 1 2 3 24 24 H 1.08995 * 109.46747 * 56.23727 * 1 2 3 25 25 H 1.09007 * 110.32923 * 333.37280 * 4 2 1 26 26 H 1.08996 * 110.21710 * 211.25617 * 4 2 1 27 27 H 1.08000 * 120.45028 * 359.72798 * 6 5 4 28 28 H 1.08008 * 119.64181 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.62292 * 180.02562 * 9 8 7 30 30 H 0.96998 * 119.99970 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.47281 * 185.30094 * 20 11 10 32 32 H 1.09003 * 109.46718 * 305.30167 * 20 11 10 33 33 H 1.00897 * 111.00463 * 65.58914 * 21 20 11 34 34 H 1.00903 * 111.00368 * 189.54262 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0735 -0.7992 1.2024 5 6 2.2690 -2.2060 0.6879 6 6 2.4313 -3.4125 1.3508 7 6 2.5873 -4.5698 0.6116 8 7 2.5831 -4.5328 -0.7067 9 6 2.4312 -3.4031 -1.3691 10 6 2.2697 -2.2049 -0.6968 11 6 2.0793 -0.7939 -1.2051 12 6 1.0878 -0.7764 -2.3399 13 1 0.5993 -1.6903 -2.6444 14 6 0.8040 0.4062 -2.9893 15 7 1.2809 1.5413 -2.5267 16 14 -0.2576 0.3966 -4.5263 17 1 -0.6661 -0.9970 -4.8369 18 1 -1.4672 1.2272 -4.2977 19 1 0.5160 0.9517 -5.6658 20 6 3.4174 -0.2092 -1.6617 21 7 3.9093 -0.9610 -2.8238 22 1 -0.3633 -1.0255 -0.0674 23 1 -0.3633 0.4543 0.9218 24 1 -0.3632 0.5711 -0.8543 25 1 1.3517 -0.7921 2.0192 26 1 3.0245 -0.3818 1.5332 27 1 2.4354 -3.4477 2.4302 28 1 2.7149 -5.5147 1.1191 29 1 2.4328 -3.4132 -2.4491 30 1 1.0815 2.3733 -2.9837 31 1 3.2820 0.8368 -1.9366 32 1 4.1411 -0.2808 -0.8498 33 1 3.3014 -0.8359 -3.6193 34 1 4.8576 -0.6995 -3.0488 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = 13.725834 kcal Electronic energy + Delta-G solvation = -16994.588478 eV Core-core repulsion = 14505.041425 eV Total energy + Delta-G solvation = -2489.547053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60686 -38.54420 -35.16963 -33.85465 -32.32314 -31.47800 -29.18204 -27.67737 -26.24834 -24.13031 -23.04650 -21.68604 -20.58592 -18.05615 -17.13613 -16.71688 -16.63311 -16.19133 -15.67757 -15.41425 -14.85419 -14.52036 -14.16827 -14.04012 -13.69070 -13.22654 -13.14528 -13.01621 -12.73841 -12.66810 -12.26440 -11.99016 -11.59408 -11.25443 -11.16489 -10.77034 -10.32460 -10.15155 -10.01947 -9.47923 -9.10488 -7.97998 -6.02819 0.52992 0.63956 1.39566 1.47898 1.55349 2.48887 3.16346 3.27144 3.76052 3.79987 4.04365 4.17480 4.43274 4.47894 4.52665 4.58940 4.81228 4.88291 4.91881 5.01585 5.10196 5.19233 5.20823 5.34054 5.44156 5.55447 5.70298 5.80728 5.86977 5.97511 6.04445 6.11894 6.49091 6.68994 6.86601 7.06654 7.31487 7.58080 9.02610 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.010828 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.993838 B = 2585.157459 C = 2814.820171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.065 4.065 3 H 0.061 0.939 4 C -0.077 4.077 5 C -0.086 4.086 6 C -0.164 4.164 7 C 0.065 3.935 8 N -0.515 5.515 9 C 0.105 3.895 10 C -0.096 4.096 11 C 0.113 3.887 12 C -0.486 4.486 13 H 0.035 0.965 14 C 0.042 3.958 15 N -0.895 5.895 16 Si 0.923 3.077 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.091 3.909 21 N -0.841 5.841 22 H 0.025 0.975 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.135 0.865 30 H 0.257 0.743 31 H 0.042 0.958 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -3.278 6.450 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.094 4.094 6 C -0.184 4.184 7 C -0.092 4.092 8 N -0.224 5.224 9 C -0.051 4.051 10 C -0.098 4.098 11 C 0.111 3.889 12 C -0.524 4.524 13 H 0.054 0.946 14 C -0.158 4.158 15 N -0.534 5.534 16 Si 0.752 3.248 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.210 1.210 20 C -0.040 4.040 21 N -0.369 5.369 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.174 0.826 28 H 0.198 0.802 29 H 0.153 0.847 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.151 0.849 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.415 -4.506 6.388 8.182 hybrid contribution -0.665 1.935 -1.244 2.395 sum 1.749 -2.571 5.144 6.011 Atomic orbital electron populations 1.21338 0.95574 0.99275 0.99461 1.21632 0.95604 0.97929 0.93304 0.92019 1.21193 1.01460 0.89948 0.98785 1.21315 0.96681 0.96465 0.94934 1.21828 1.02766 0.91635 1.02158 1.23054 0.97621 0.99119 0.89392 1.67652 1.14186 1.29591 1.11018 1.22035 0.96011 0.87172 0.99848 1.21857 0.95641 0.97639 0.94666 1.17762 0.92523 0.85613 0.92983 1.20890 1.22979 0.93108 1.15471 0.94623 1.25167 0.96769 0.95421 0.98402 1.70002 1.46188 0.97607 1.39561 0.86048 0.79302 0.77448 0.82025 1.20429 1.21680 1.20979 1.21495 0.94635 0.96402 0.91513 1.58677 1.05626 1.63171 1.09447 0.95579 0.94075 0.93388 0.89742 0.90013 0.82574 0.80203 0.84716 0.93359 0.93996 0.95518 0.84854 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.16 8.08 71.98 0.58 -3.58 16 2 C -0.07 -2.70 2.29 -9.88 -0.02 -2.73 16 3 H 0.06 2.75 7.70 -2.39 -0.02 2.73 16 4 C -0.08 -2.65 6.29 30.39 0.19 -2.46 16 5 C -0.09 -3.18 6.21 -19.60 -0.12 -3.30 16 6 C -0.16 -5.10 10.12 22.35 0.23 -4.88 16 7 C 0.06 2.08 11.19 84.68 0.95 3.03 16 8 N -0.51 -20.19 10.36 -195.74 -2.03 -22.21 16 9 C 0.10 4.48 10.70 84.72 0.91 5.38 16 10 C -0.10 -4.08 4.69 -19.63 -0.09 -4.17 16 11 C 0.11 4.99 0.26 -53.04 -0.01 4.98 16 12 C -0.49 -23.80 5.38 25.60 0.14 -23.67 16 13 H 0.04 1.87 7.62 -2.91 -0.02 1.85 16 14 C 0.04 2.06 3.88 84.65 0.33 2.39 16 15 N -0.89 -44.52 10.14 21.45 0.22 -44.30 16 16 Si 0.92 40.91 29.54 68.60 2.03 42.94 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.09 3.93 5.34 86.30 0.46 4.39 16 21 N -0.84 -33.68 9.10 -186.73 -1.70 -35.38 16 22 H 0.03 1.10 8.07 -2.39 -0.02 1.08 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 2.25 6.01 -2.39 -0.01 2.24 16 25 H 0.08 2.54 7.90 -2.38 -0.02 2.52 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.18 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.14 6.00 8.06 -2.91 -0.02 5.97 16 30 H 0.26 12.56 8.31 -92.71 -0.77 11.79 16 31 H 0.04 2.00 6.19 -2.39 -0.01 1.99 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.34 14.38 8.09 -89.70 -0.73 13.65 16 34 H 0.33 11.35 9.08 -89.69 -0.81 10.54 16 Total: -1.00 -53.85 272.45 1.62 -52.22 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.43 Total: 31.33 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.53 Total: -24.60 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -3.51 Total: -101.90 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -53.85 1.62 -52.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.950 kcal (2) G-P(sol) polarization free energy of solvation -53.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds