Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.87743 * 2 1 4 4 C 1.54425 * 110.80884 * 236.51572 * 2 1 3 5 5 C 1.51063 * 105.14860 * 267.90507 * 4 2 1 6 6 C 1.38617 * 131.51537 * 162.93273 * 5 4 2 7 7 C 1.38208 * 119.09447 * 180.02562 * 6 5 4 8 8 N 1.31889 * 120.71170 * 0.02562 * 7 6 5 9 9 C 1.31828 * 121.78494 * 359.70798 * 8 7 6 10 10 C 1.38339 * 120.75720 * 0.56093 * 9 8 7 11 11 C 1.51179 * 131.27085 * 179.76999 * 10 9 8 12 12 C 1.50697 * 110.29650 * 315.71794 * 11 10 9 13 13 H 1.07997 * 120.00190 * 354.79795 * 12 11 10 14 14 C 1.37885 * 119.99836 * 174.80343 * 12 11 10 15 15 N 1.31514 * 120.00195 * 7.48623 * 14 12 11 16 16 Si 1.86806 * 119.99685 * 187.48521 * 14 12 11 17 17 H 1.48502 * 109.47007 * 59.99955 * 16 14 12 18 18 H 1.48500 * 109.46713 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46832 * 300.00030 * 16 14 12 20 20 C 1.53001 * 110.29668 * 77.85118 * 11 10 9 21 21 N 1.46906 * 109.47062 * 294.61647 * 20 11 10 22 22 H 1.09006 * 109.46644 * 298.64077 * 1 2 3 23 23 H 1.08997 * 109.47556 * 58.64187 * 1 2 3 24 24 H 1.08999 * 109.47478 * 178.64589 * 1 2 3 25 25 H 1.09001 * 110.30472 * 26.81781 * 4 2 1 26 26 H 1.08993 * 110.30308 * 148.98044 * 4 2 1 27 27 H 1.08001 * 120.45689 * 0.04162 * 6 5 4 28 28 H 1.07998 * 119.64530 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.62415 * 180.32981 * 9 8 7 30 30 H 0.96992 * 120.00094 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47545 * 54.61860 * 20 11 10 32 32 H 1.09000 * 109.47164 * 174.62079 * 20 11 10 33 33 H 1.00896 * 110.99914 * 56.04993 * 21 20 11 34 34 H 1.00906 * 110.99473 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0786 -0.7964 -1.2039 5 6 2.2686 -2.2049 -0.6920 6 6 2.4310 -3.4101 -1.3571 7 6 2.5869 -4.5688 -0.6200 8 7 2.5815 -4.5343 0.6984 9 6 2.4346 -3.4052 1.3628 10 6 2.2678 -2.2065 0.6927 11 6 2.0773 -0.7965 1.2036 12 6 1.0840 -0.7809 2.3368 13 1 0.5631 -1.6864 2.6108 14 6 0.8401 0.3895 3.0238 15 7 1.3595 1.5211 2.6002 16 14 -0.2280 0.3678 4.5562 17 1 0.3838 -0.5245 5.5734 18 1 -0.3353 1.7438 5.1042 19 1 -1.5821 -0.1331 4.2086 20 6 3.4153 -0.2124 1.6613 21 7 3.9064 -0.9652 2.8233 22 1 -0.3633 0.4926 0.9020 23 1 -0.3634 0.5348 -0.8775 24 1 -0.3634 -1.0273 -0.0243 25 1 1.3601 -0.7856 -2.0236 26 1 3.0318 -0.3804 -1.5299 27 1 2.4360 -3.4434 -2.4366 28 1 2.7145 -5.5127 -1.1291 29 1 2.4408 -3.4166 2.4427 30 1 1.1876 2.3444 3.0832 31 1 4.1395 -0.2837 0.8498 32 1 3.2800 0.8335 1.9368 33 1 3.9787 -1.9492 2.6124 34 1 4.7895 -0.5981 3.1450 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 33.561349 kcal Electronic energy + Delta-G solvation = -16999.142302 eV Core-core repulsion = 14510.455382 eV Total energy + Delta-G solvation = -2488.686920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23386 -37.00193 -33.52456 -32.10826 -30.84590 -29.96295 -27.58361 -26.17009 -24.28386 -22.68576 -21.68258 -20.14135 -18.90131 -16.42761 -15.63269 -15.34642 -14.82892 -14.56147 -14.08124 -13.88613 -13.34172 -12.89705 -12.66589 -12.48036 -12.05511 -11.80707 -11.71163 -11.26957 -10.85470 -10.68386 -10.32191 -10.29244 -9.90422 -9.69632 -9.43748 -9.09136 -8.79903 -8.66153 -8.22603 -8.05767 -7.41419 -5.94446 -3.93508 1.81313 1.96545 3.38653 3.42449 3.48810 4.45000 4.53995 5.03525 5.10070 5.35897 5.49478 5.65496 5.71426 5.86080 5.95173 5.98241 6.23185 6.31344 6.39920 6.53898 6.59848 6.65883 6.73956 6.83579 7.03022 7.17275 7.38571 7.42641 7.45921 7.65065 7.71519 8.04209 8.21990 8.47124 8.52042 8.62863 8.97393 9.67215 11.11507 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.010831 C = 0.009949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.334747 B = 2584.523959 C = 2813.744334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.064 4.064 3 H 0.079 0.921 4 C -0.088 4.088 5 C -0.071 4.071 6 C -0.170 4.170 7 C 0.066 3.934 8 N -0.493 5.493 9 C 0.101 3.899 10 C -0.091 4.091 11 C 0.116 3.884 12 C -0.474 4.474 13 H 0.052 0.948 14 C 0.080 3.920 15 N -0.888 5.888 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.084 3.916 21 N -0.826 5.826 22 H 0.079 0.921 23 H 0.018 0.982 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.258 0.742 31 H -0.025 1.025 32 H 0.110 0.890 33 H 0.319 0.681 34 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -3.629 -6.119 7.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 H 0.097 0.903 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.190 4.190 7 C -0.090 4.090 8 N -0.202 5.202 9 C -0.055 4.055 10 C -0.093 4.093 11 C 0.115 3.885 12 C -0.512 4.512 13 H 0.070 0.930 14 C -0.121 4.121 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.208 1.208 20 C -0.047 4.047 21 N -0.353 5.353 22 H 0.098 0.902 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.068 0.932 31 H -0.007 1.007 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.156 -3.951 -5.239 6.907 hybrid contribution 0.184 0.426 -0.352 0.583 sum 2.340 -3.525 -5.591 7.011 Atomic orbital electron populations 1.21482 0.95143 0.99702 1.00342 1.21775 0.95963 0.98650 0.91948 0.90305 1.21338 1.00462 0.90838 0.99827 1.21099 0.95988 0.95301 0.95471 1.21505 1.04252 0.92890 1.00361 1.22402 0.99161 0.97315 0.90171 1.67655 1.13293 1.29843 1.09421 1.22328 0.96074 0.86710 1.00361 1.22228 0.94352 0.98716 0.93971 1.17813 0.93583 0.83639 0.93462 1.20532 1.21367 0.95131 1.14172 0.92971 1.24665 0.95623 0.95363 0.96466 1.69796 1.45205 0.98263 1.39372 0.86758 0.80533 0.76754 0.84447 1.20220 1.21707 1.20815 1.21878 0.93161 1.01463 0.88191 1.58629 1.32385 1.05807 1.38452 0.90227 0.96328 0.94768 0.91758 0.91331 0.86290 0.83873 0.82876 0.93168 1.00705 0.87185 0.86897 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.23 37.16 0.31 -2.02 16 2 C -0.06 -1.35 2.40 -89.16 -0.21 -1.56 16 3 H 0.08 1.76 7.80 -51.93 -0.41 1.35 16 4 C -0.09 -1.59 6.30 -26.96 -0.17 -1.76 16 5 C -0.07 -1.35 6.20 -104.22 -0.65 -1.99 16 6 C -0.17 -2.84 10.12 -39.45 -0.40 -3.24 16 7 C 0.07 1.11 11.19 -17.54 -0.20 0.92 16 8 N -0.49 -9.48 10.36 -13.22 -0.14 -9.62 16 9 C 0.10 2.06 9.62 -17.52 -0.17 1.89 16 10 C -0.09 -1.90 4.53 -104.27 -0.47 -2.37 16 11 C 0.12 2.60 0.25 -155.87 -0.04 2.56 16 12 C -0.47 -11.82 5.89 -34.44 -0.20 -12.03 16 13 H 0.05 1.37 7.67 -52.49 -0.40 0.97 16 14 C 0.08 2.03 3.95 -17.82 -0.07 1.96 16 15 N -0.89 -22.75 10.42 55.43 0.58 -22.17 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.08 1.84 5.33 -3.82 -0.02 1.82 16 21 N -0.83 -16.97 9.14 -10.36 -0.09 -17.07 16 22 H 0.08 1.88 6.04 -51.93 -0.31 1.57 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.15 3.10 7.60 -52.49 -0.40 2.70 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H -0.03 -0.54 8.14 -51.93 -0.42 -0.96 16 32 H 0.11 2.70 6.00 -51.93 -0.31 2.39 16 33 H 0.32 6.26 6.65 -39.29 -0.26 6.00 16 34 H 0.32 5.74 9.08 -39.29 -0.36 5.38 16 LS Contribution 270.53 15.07 4.08 4.08 Total: -1.00 -26.42 270.53 -7.43 -33.85 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.53 Total: 10.94 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.29 Total: -15.82 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.35 Total: -48.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.42 -7.43 -33.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.410 kcal (2) G-P(sol) polarization free energy of solvation -26.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds