Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.87743 * 2 1 4 4 C 1.54425 * 110.80884 * 236.51572 * 2 1 3 5 5 C 1.51063 * 105.14860 * 267.90507 * 4 2 1 6 6 C 1.38617 * 131.51537 * 162.93273 * 5 4 2 7 7 C 1.38208 * 119.09447 * 180.02562 * 6 5 4 8 8 N 1.31889 * 120.71170 * 0.02562 * 7 6 5 9 9 C 1.31828 * 121.78494 * 359.70798 * 8 7 6 10 10 C 1.38339 * 120.75720 * 0.56093 * 9 8 7 11 11 C 1.51179 * 131.27085 * 179.76999 * 10 9 8 12 12 C 1.50697 * 110.29650 * 315.71794 * 11 10 9 13 13 H 1.07997 * 120.00190 * 354.79795 * 12 11 10 14 14 C 1.37885 * 119.99836 * 174.80343 * 12 11 10 15 15 N 1.31514 * 120.00195 * 7.48623 * 14 12 11 16 16 Si 1.86806 * 119.99685 * 187.48521 * 14 12 11 17 17 H 1.48502 * 109.47007 * 59.99955 * 16 14 12 18 18 H 1.48500 * 109.46713 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46832 * 300.00030 * 16 14 12 20 20 C 1.53001 * 110.29668 * 77.85118 * 11 10 9 21 21 N 1.46906 * 109.47062 * 294.61647 * 20 11 10 22 22 H 1.09006 * 109.46644 * 298.64077 * 1 2 3 23 23 H 1.08997 * 109.47556 * 58.64187 * 1 2 3 24 24 H 1.08999 * 109.47478 * 178.64589 * 1 2 3 25 25 H 1.09001 * 110.30472 * 26.81781 * 4 2 1 26 26 H 1.08993 * 110.30308 * 148.98044 * 4 2 1 27 27 H 1.08001 * 120.45689 * 0.04162 * 6 5 4 28 28 H 1.07998 * 119.64530 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.62415 * 180.32981 * 9 8 7 30 30 H 0.96992 * 120.00094 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47545 * 54.61860 * 20 11 10 32 32 H 1.09000 * 109.47164 * 174.62079 * 20 11 10 33 33 H 1.00896 * 110.99914 * 56.04993 * 21 20 11 34 34 H 1.00906 * 110.99473 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0786 -0.7964 -1.2039 5 6 2.2686 -2.2049 -0.6920 6 6 2.4310 -3.4101 -1.3571 7 6 2.5869 -4.5688 -0.6200 8 7 2.5815 -4.5343 0.6984 9 6 2.4346 -3.4052 1.3628 10 6 2.2678 -2.2065 0.6927 11 6 2.0773 -0.7965 1.2036 12 6 1.0840 -0.7809 2.3368 13 1 0.5631 -1.6864 2.6108 14 6 0.8401 0.3895 3.0238 15 7 1.3595 1.5211 2.6002 16 14 -0.2280 0.3678 4.5562 17 1 0.3838 -0.5245 5.5734 18 1 -0.3353 1.7438 5.1042 19 1 -1.5821 -0.1331 4.2086 20 6 3.4153 -0.2124 1.6613 21 7 3.9064 -0.9652 2.8233 22 1 -0.3633 0.4926 0.9020 23 1 -0.3634 0.5348 -0.8775 24 1 -0.3634 -1.0273 -0.0243 25 1 1.3601 -0.7856 -2.0236 26 1 3.0318 -0.3804 -1.5299 27 1 2.4360 -3.4434 -2.4366 28 1 2.7145 -5.5127 -1.1291 29 1 2.4408 -3.4166 2.4427 30 1 1.1876 2.3444 3.0832 31 1 4.1395 -0.2837 0.8498 32 1 3.2800 0.8335 1.9368 33 1 3.9787 -1.9492 2.6124 34 1 4.7895 -0.5981 3.1450 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 17.187659 kcal Electronic energy + Delta-G solvation = -16999.852319 eV Core-core repulsion = 14510.455382 eV Total energy + Delta-G solvation = -2489.396937 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72460 -38.56340 -35.16498 -33.94718 -32.35016 -31.50803 -29.23741 -27.77137 -26.12365 -24.21247 -23.19402 -21.68608 -20.60597 -18.13480 -17.22583 -16.77097 -16.68030 -16.14909 -15.66614 -15.50412 -14.96507 -14.39955 -14.20735 -14.07095 -13.74418 -13.55504 -13.21611 -12.88951 -12.68651 -12.58372 -12.19655 -12.00068 -11.57208 -11.33272 -11.12500 -10.82882 -10.29836 -10.13262 -10.08833 -9.59077 -9.08150 -7.89291 -5.90377 0.40431 0.53096 1.46111 1.49404 1.55019 2.56840 3.04961 3.40065 3.69949 3.70885 3.98529 4.10187 4.36884 4.41186 4.48051 4.54416 4.70591 4.77222 4.87565 4.96532 5.04303 5.10985 5.16085 5.25065 5.38006 5.62552 5.68710 5.79761 5.83270 5.95515 6.00137 6.15830 6.45049 6.75487 6.91264 7.04658 7.20632 7.70332 9.13901 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.010831 C = 0.009949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.334747 B = 2584.523959 C = 2813.744334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.066 4.066 3 H 0.061 0.939 4 C -0.078 4.078 5 C -0.079 4.079 6 C -0.160 4.160 7 C 0.070 3.930 8 N -0.508 5.508 9 C 0.089 3.911 10 C -0.116 4.116 11 C 0.112 3.888 12 C -0.473 4.473 13 H 0.030 0.970 14 C 0.051 3.949 15 N -0.897 5.897 16 Si 0.921 3.079 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.092 3.908 21 N -0.834 5.834 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.140 0.860 30 H 0.254 0.746 31 H -0.018 1.018 32 H 0.084 0.916 33 H 0.325 0.675 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -4.795 -8.204 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.179 4.179 7 C -0.087 4.087 8 N -0.217 5.217 9 C -0.067 4.067 10 C -0.118 4.118 11 C 0.110 3.890 12 C -0.511 4.511 13 H 0.049 0.951 14 C -0.148 4.148 15 N -0.537 5.537 16 Si 0.750 3.250 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.209 1.209 20 C -0.039 4.039 21 N -0.363 5.363 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.177 0.823 28 H 0.201 0.799 29 H 0.158 0.842 30 H 0.064 0.936 31 H 0.000 1.000 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.523 -5.116 -7.311 9.273 hybrid contribution 0.078 0.705 0.266 0.758 sum 2.602 -4.410 -7.045 8.709 Atomic orbital electron populations 1.21354 0.95422 0.99070 0.99974 1.21672 0.95719 0.98010 0.93208 0.92045 1.21235 1.01579 0.89829 0.98839 1.21322 0.96043 0.96583 0.94714 1.21892 1.02135 0.91514 1.02388 1.23131 0.97026 0.99214 0.89327 1.67675 1.13876 1.29196 1.10980 1.22161 0.97256 0.87219 1.00045 1.22074 0.96615 0.97888 0.95258 1.17779 0.92804 0.85299 0.93085 1.20599 1.21526 0.93952 1.15024 0.95119 1.25012 0.96525 0.95486 0.97810 1.69879 1.45940 0.98168 1.39695 0.86217 0.79640 0.76325 0.82777 1.21066 1.21640 1.20937 1.21659 0.93542 1.00047 0.88652 1.58550 1.33411 1.06235 1.38128 0.93261 0.93895 0.95490 0.89489 0.89884 0.82273 0.79853 0.84238 0.93636 1.00023 0.89823 0.86199 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.22 8.23 71.98 0.59 -3.63 16 2 C -0.07 -2.75 2.40 -9.85 -0.02 -2.78 16 3 H 0.06 2.74 7.80 -2.39 -0.02 2.72 16 4 C -0.08 -2.61 6.30 30.45 0.19 -2.42 16 5 C -0.08 -2.77 6.20 -19.60 -0.12 -2.90 16 6 C -0.16 -4.62 10.12 22.35 0.23 -4.40 16 7 C 0.07 2.07 11.19 84.68 0.95 3.02 16 8 N -0.51 -18.53 10.36 -195.75 -2.03 -20.55 16 9 C 0.09 3.55 9.62 84.72 0.81 4.37 16 10 C -0.12 -4.76 4.53 -19.63 -0.09 -4.84 16 11 C 0.11 4.98 0.25 -53.06 -0.01 4.97 16 12 C -0.47 -24.02 5.89 25.60 0.15 -23.87 16 13 H 0.03 1.65 7.67 -2.91 -0.02 1.63 16 14 C 0.05 2.63 3.95 84.66 0.33 2.97 16 15 N -0.90 -46.85 10.42 21.45 0.22 -46.62 16 16 Si 0.92 43.41 29.54 68.60 2.03 45.44 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 C 0.09 4.07 5.33 86.30 0.46 4.53 16 21 N -0.83 -34.48 9.14 -186.71 -1.71 -36.18 16 22 H 0.05 2.34 6.04 -2.38 -0.01 2.32 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 2.52 7.91 -2.39 -0.02 2.50 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.14 5.80 7.60 -2.91 -0.02 5.78 16 30 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 31 H -0.02 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.08 4.17 6.00 -2.39 -0.01 4.16 16 33 H 0.33 12.82 6.65 -89.70 -0.60 12.23 16 34 H 0.33 11.91 9.08 -89.69 -0.81 11.10 16 Total: -1.00 -56.68 270.53 1.69 -54.99 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.30 Total: 27.91 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 3.47 Total: -24.98 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.51 Total: -103.36 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -56.68 1.69 -54.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.182 kcal (2) G-P(sol) polarization free energy of solvation -56.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds