Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.72269 * 2 1 4 4 C 1.54406 * 110.97771 * 123.49499 * 2 1 3 5 5 C 1.51187 * 105.19742 * 92.15191 * 4 2 1 6 6 C 1.38342 * 131.26517 * 197.04350 * 5 4 2 7 7 N 1.31832 * 120.75392 * 179.97438 * 6 5 4 8 8 C 1.31887 * 121.79008 * 0.08343 * 7 6 5 9 9 C 1.38213 * 120.70842 * 359.95465 * 8 7 6 10 10 C 1.38465 * 109.69233 * 17.06311 * 5 4 2 11 11 C 1.51053 * 109.87332 * 359.97438 * 10 5 4 12 12 C 1.50705 * 110.31047 * 101.86198 * 11 10 5 13 13 H 1.07996 * 120.00355 * 245.69951 * 12 11 10 14 14 C 1.37883 * 119.99722 * 65.70281 * 12 11 10 15 15 N 1.31509 * 120.00295 * 2.48657 * 14 12 11 16 16 Si 1.86802 * 119.99661 * 182.49621 * 14 12 11 17 17 H 1.48505 * 109.46684 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47318 * 59.99763 * 16 14 12 19 19 H 1.48502 * 109.46658 * 299.99285 * 16 14 12 20 20 C 1.53000 * 110.38910 * 223.97795 * 11 10 5 21 21 N 1.46903 * 109.47137 * 172.47618 * 20 11 10 22 22 H 1.09003 * 109.47130 * 183.37786 * 1 2 3 23 23 H 1.09004 * 109.47074 * 303.37826 * 1 2 3 24 24 H 1.08995 * 109.47121 * 63.37489 * 1 2 3 25 25 H 1.08998 * 110.29336 * 211.07957 * 4 2 1 26 26 H 1.08993 * 110.29527 * 333.21967 * 4 2 1 27 27 H 1.08002 * 119.62242 * 0.02844 * 6 5 4 28 28 H 1.07997 * 119.64716 * 179.97438 * 8 7 6 29 29 H 1.07996 * 120.45480 * 179.97438 * 9 8 7 30 30 H 0.97009 * 119.99739 * 354.53136 * 15 14 12 31 31 H 1.08992 * 109.47791 * 292.48254 * 20 11 10 32 32 H 1.09005 * 109.46677 * 52.48123 * 20 11 10 33 33 H 1.00898 * 111.00263 * 61.15696 * 21 20 11 34 34 H 1.00905 * 110.99916 * 185.10720 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0828 -0.7956 1.2023 5 6 2.2758 -2.2049 0.6900 6 6 2.4423 -3.4042 1.3591 7 7 2.5957 -4.5318 0.6936 8 6 2.5989 -4.5655 -0.6249 9 6 2.4387 -3.4067 -1.3610 10 6 2.2732 -2.2024 -0.6947 11 6 2.0780 -0.7943 -1.2053 12 6 3.3935 -0.2148 -1.6578 13 1 3.8238 0.6241 -1.1311 14 6 4.0478 -0.7557 -2.7443 15 7 3.5006 -1.7454 -3.4156 16 14 5.7115 -0.0829 -3.2627 17 1 6.1998 -0.8304 -4.4493 18 1 6.6786 -0.2402 -2.1468 19 1 5.5789 1.3563 -3.6038 20 6 1.0687 -0.7793 -2.3551 21 7 0.7582 0.6104 -2.7160 22 1 -0.3633 -1.0259 0.0606 23 1 -0.3633 0.5654 0.8582 24 1 -0.3633 0.4605 -0.9186 25 1 3.0356 -0.3773 1.5265 26 1 1.3660 -0.7866 2.0233 27 1 2.4457 -3.4170 2.4390 28 1 2.7277 -5.5088 -1.1349 29 1 2.4423 -3.4390 -2.4404 30 1 2.6760 -2.1476 -3.1006 31 1 1.4931 -1.2926 -3.2179 32 1 0.1556 -1.2865 -2.0436 33 1 1.5857 1.0970 -3.0264 34 1 0.0323 0.6487 -3.4160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = 30.061713 kcal Electronic energy + Delta-G solvation = -17115.108187 eV Core-core repulsion = 14626.269511 eV Total energy + Delta-G solvation = -2488.838676 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.87009 -38.84039 -35.60342 -34.04695 -32.35391 -31.51315 -29.22011 -27.82871 -26.13624 -24.21583 -23.51186 -22.07300 -20.39293 -19.01960 -17.36229 -17.04523 -16.32989 -16.17757 -15.78576 -15.52285 -15.10707 -14.46924 -14.39432 -14.23799 -13.87639 -13.62057 -13.15874 -12.78629 -12.50063 -12.38628 -12.06498 -12.04628 -11.87317 -11.55403 -11.15830 -10.94918 -10.41959 -10.36633 -9.93162 -9.60439 -9.33891 -8.30248 -6.22585 0.32717 0.58083 1.53605 1.57846 1.76112 2.55812 3.01289 3.21203 3.59047 3.73346 3.85726 4.08436 4.20403 4.31757 4.38403 4.44779 4.63635 4.71013 4.78751 4.85014 4.94533 5.01712 5.04118 5.14650 5.28864 5.29070 5.49623 5.64833 5.75168 5.83704 5.94903 6.18701 6.28530 6.47195 6.74419 6.87165 7.10560 7.50273 8.87785 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.013665 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.372640 B = 2048.591438 C = 2666.096169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 H 0.065 0.935 4 C -0.062 4.062 5 C -0.166 4.166 6 C 0.090 3.910 7 N -0.510 5.510 8 C 0.076 3.924 9 C -0.183 4.183 10 C -0.030 4.030 11 C 0.089 3.911 12 C -0.575 4.575 13 H 0.044 0.956 14 C -0.013 4.013 15 N -0.938 5.938 16 Si 1.096 2.904 17 H -0.291 1.291 18 H -0.287 1.287 19 H -0.270 1.270 20 C 0.068 3.932 21 N -0.826 5.826 22 H 0.028 0.972 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.126 0.874 30 H 0.284 0.716 31 H 0.022 0.978 32 H 0.041 0.959 33 H 0.340 0.660 34 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 1.574 4.844 6.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.100 4.100 5 C -0.168 4.168 6 C -0.066 4.066 7 N -0.220 5.220 8 C -0.080 4.080 9 C -0.204 4.204 10 C -0.039 4.039 11 C 0.088 3.912 12 C -0.613 4.613 13 H 0.063 0.937 14 C -0.214 4.214 15 N -0.581 5.581 16 Si 0.922 3.078 17 H -0.217 1.217 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.064 4.064 21 N -0.354 5.354 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.191 0.809 28 H 0.187 0.813 29 H 0.144 0.856 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.153 0.847 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.207 0.732 4.914 5.913 hybrid contribution -0.561 0.319 -0.626 0.899 sum -3.768 1.051 4.288 5.804 Atomic orbital electron populations 1.21876 0.94378 0.99917 1.03155 1.21587 0.95625 0.97884 0.92757 0.91622 1.21010 1.01122 0.89318 0.98555 1.21837 1.02260 0.97515 0.95229 1.22508 0.96589 0.86626 1.00887 1.67661 1.14979 1.29669 1.09651 1.22877 0.96854 0.98303 0.89951 1.22157 1.03207 0.93345 1.01650 1.21737 0.90662 0.96403 0.95066 1.18030 0.93962 0.86543 0.92617 1.22012 1.06157 1.16836 1.16306 0.93743 1.26601 1.05232 0.95601 0.93933 1.71016 1.22434 1.24517 1.40137 0.83164 0.72798 0.76129 0.75741 1.21734 1.21317 1.19483 1.21887 0.96222 0.89836 0.98479 1.58723 1.14249 1.14494 1.47972 0.95296 0.92362 0.89827 0.91099 0.89184 0.80852 0.81315 0.85592 0.89684 0.95981 0.94102 0.84703 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 7.94 71.98 0.57 -4.00 16 2 C -0.06 -2.30 2.74 -9.84 -0.03 -2.33 16 3 H 0.07 2.63 7.75 -2.39 -0.02 2.61 16 4 C -0.06 -2.21 6.30 30.48 0.19 -2.02 16 5 C -0.17 -6.68 6.19 -19.63 -0.12 -6.80 16 6 C 0.09 3.34 11.19 84.72 0.95 4.29 16 7 N -0.51 -20.10 10.36 -195.74 -2.03 -22.12 16 8 C 0.08 3.04 11.19 84.68 0.95 3.99 16 9 C -0.18 -8.24 8.86 22.36 0.20 -8.04 16 10 C -0.03 -1.35 4.64 -19.61 -0.09 -1.44 16 11 C 0.09 3.98 0.25 -53.09 -0.01 3.97 16 12 C -0.58 -28.98 7.18 25.60 0.18 -28.80 16 13 H 0.04 2.29 7.60 -2.91 -0.02 2.26 16 14 C -0.01 -0.65 5.19 84.66 0.44 -0.21 16 15 N -0.94 -50.96 12.06 21.45 0.26 -50.70 16 16 Si 1.10 47.97 29.90 68.60 2.05 50.02 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 C 0.07 2.90 4.55 86.30 0.39 3.29 16 21 N -0.83 -30.78 7.38 -186.72 -1.38 -32.15 16 22 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 2.88 5.54 -2.39 -0.01 2.86 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.09 2.63 7.91 -2.39 -0.02 2.61 16 27 H 0.17 5.06 8.06 -2.91 -0.02 5.04 16 28 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 29 H 0.13 6.03 5.45 -2.91 -0.02 6.02 16 30 H 0.28 14.95 1.68 -92.70 -0.16 14.80 16 31 H 0.02 1.09 4.84 -2.39 -0.01 1.07 16 32 H 0.04 1.69 6.94 -2.38 -0.02 1.68 16 33 H 0.34 13.72 8.27 -89.70 -0.74 12.98 16 34 H 0.33 10.61 9.08 -89.69 -0.81 9.79 16 Total: -1.00 -57.56 262.57 2.71 -54.85 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: 0.19 Total: 38.22 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 3.62 Total: -38.11 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.15 Total: -104.98 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.02 kcal Total: -57.56 2.71 -54.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.909 kcal (2) G-P(sol) polarization free energy of solvation -57.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds