Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.72064 * 2 1 4 4 C 1.54086 * 110.40267 * 123.64012 * 2 1 3 5 5 C 1.51188 * 105.29984 * 92.39921 * 4 2 1 6 6 C 1.38336 * 131.27386 * 196.47538 * 5 4 2 7 7 N 1.31829 * 120.75954 * 180.02562 * 6 5 4 8 8 C 1.31887 * 121.78652 * 359.97438 * 7 6 5 9 9 C 1.38207 * 120.71078 * 0.02562 * 8 7 6 10 10 C 1.38468 * 109.68464 * 16.74033 * 5 4 2 11 11 C 1.51052 * 109.88254 * 0.07413 * 10 5 4 12 12 C 1.50693 * 110.31180 * 224.27152 * 11 10 5 13 13 H 1.07998 * 120.00158 * 1.11157 * 12 11 10 14 14 C 1.37876 * 120.00546 * 181.10800 * 12 11 10 15 15 N 1.31514 * 120.00858 * 192.50529 * 14 12 11 16 16 Si 1.86807 * 119.99595 * 12.50561 * 14 12 11 17 17 H 1.48498 * 109.47117 * 84.52640 * 16 14 12 18 18 H 1.48498 * 109.47383 * 204.52812 * 16 14 12 19 19 H 1.48500 * 109.47248 * 324.52987 * 16 14 12 20 20 C 1.52999 * 110.30679 * 102.10397 * 11 10 5 21 21 N 1.46901 * 109.47009 * 59.25421 * 20 11 10 22 22 H 1.08990 * 109.47176 * 180.30582 * 1 2 3 23 23 H 1.08996 * 109.47034 * 300.30872 * 1 2 3 24 24 H 1.09002 * 109.46822 * 60.30873 * 1 2 3 25 25 H 1.09005 * 110.75526 * 333.17700 * 4 2 1 26 26 H 1.08998 * 109.74185 * 211.10539 * 4 2 1 27 27 H 1.08006 * 119.61898 * 0.02562 * 6 5 4 28 28 H 1.07997 * 119.64544 * 180.02562 * 8 7 6 29 29 H 1.07997 * 120.45588 * 179.97438 * 9 8 7 30 30 H 0.96991 * 120.00452 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.46732 * 179.25058 * 20 11 10 32 32 H 1.08999 * 109.47559 * 299.25298 * 20 11 10 33 33 H 1.00902 * 111.00006 * 67.76227 * 21 20 11 34 34 H 1.00897 * 111.00125 * 191.72122 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0672 -0.8000 1.2023 5 6 2.2635 -2.2084 0.6888 6 6 2.4308 -3.4083 1.3566 7 7 2.5883 -4.5347 0.6901 8 6 2.5927 -4.5669 -0.6284 9 6 2.4311 -3.4077 -1.3633 10 6 2.2688 -2.2034 -0.6959 11 6 2.0787 -0.7942 -1.2053 12 6 1.0856 -0.7771 -2.3386 13 1 0.6136 -1.6949 -2.6569 14 6 0.7794 0.4101 -2.9692 15 7 -0.2532 0.4764 -3.7810 16 14 1.8312 1.9247 -2.6704 17 1 3.0060 1.8985 -3.5783 18 1 1.0280 3.1454 -2.9352 19 1 2.2959 1.9343 -1.2600 20 6 3.4169 -0.2094 -1.6616 21 7 3.9798 -1.0486 -2.7279 22 1 -0.3633 -1.0276 0.0055 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 0.5090 -0.8928 25 1 1.3493 -0.7934 2.0226 26 1 3.0188 -0.3803 1.5283 27 1 2.4324 -3.4223 2.4366 28 1 2.7241 -5.5093 -1.1392 29 1 2.4358 -3.4388 -2.4428 30 1 -0.4688 1.3118 -4.2243 31 1 3.2619 0.8016 -2.0384 32 1 4.1074 -0.1812 -0.8187 33 1 3.4218 -0.9901 -3.5666 34 1 4.9399 -0.8007 -2.9143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 31.206974 kcal Electronic energy + Delta-G solvation = -17078.176475 eV Core-core repulsion = 14589.387461 eV Total energy + Delta-G solvation = -2488.789014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78137 -38.82546 -35.21698 -34.28224 -32.48943 -31.82027 -29.69096 -27.69191 -25.98671 -24.68024 -23.21032 -21.76387 -21.05830 -18.18892 -17.68447 -16.93663 -16.64015 -16.24533 -15.77610 -15.73008 -15.21086 -14.80256 -14.42703 -14.30561 -13.98392 -13.69382 -13.44571 -13.00302 -12.60784 -12.44473 -12.07868 -11.95944 -11.91082 -11.56191 -11.04816 -10.85310 -10.55015 -10.27285 -9.95862 -9.57778 -9.27882 -8.25115 -6.20328 0.43183 0.66344 1.26870 1.31257 1.43805 2.31894 3.05008 3.15978 3.62224 3.75039 3.78709 4.01806 4.20208 4.29085 4.35981 4.47090 4.49985 4.65014 4.76073 4.82002 4.90773 4.96912 5.04853 5.14293 5.22445 5.31478 5.48643 5.55623 5.63776 5.84865 5.91444 6.02564 6.32373 6.44379 6.70233 6.84426 7.20774 7.38488 8.91302 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.011521 C = 0.010663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.888871 B = 2429.836245 C = 2625.296761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.062 4.062 5 C -0.169 4.169 6 C 0.092 3.908 7 N -0.511 5.511 8 C 0.074 3.926 9 C -0.144 4.144 10 C -0.003 4.003 11 C 0.076 3.924 12 C -0.473 4.473 13 H 0.029 0.971 14 C 0.035 3.965 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.286 1.286 18 H -0.318 1.318 19 H -0.216 1.216 20 C 0.073 3.927 21 N -0.837 5.837 22 H 0.029 0.971 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.120 0.880 30 H 0.261 0.739 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.341 0.659 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 -0.844 8.569 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 H 0.100 0.900 4 C -0.099 4.099 5 C -0.171 4.171 6 C -0.064 4.064 7 N -0.220 5.220 8 C -0.081 4.081 9 C -0.164 4.164 10 C -0.011 4.011 11 C 0.075 3.925 12 C -0.511 4.511 13 H 0.047 0.953 14 C -0.163 4.163 15 N -0.580 5.580 16 Si 0.754 3.246 17 H -0.214 1.214 18 H -0.248 1.248 19 H -0.141 1.141 20 C -0.058 4.058 21 N -0.366 5.366 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.190 0.810 28 H 0.188 0.812 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.435 -2.157 9.413 12.188 hybrid contribution -0.013 2.385 -1.876 3.035 sum 7.422 0.228 7.537 10.580 Atomic orbital electron populations 1.21502 0.95014 1.00223 1.00255 1.22333 0.96310 0.99004 0.94687 0.89976 1.20983 1.02000 0.89159 0.97787 1.21859 1.02349 0.97532 0.95327 1.22452 0.96711 0.86415 1.00863 1.67662 1.14743 1.29661 1.09902 1.22890 0.97119 0.98348 0.89781 1.21650 1.00865 0.92590 1.01319 1.20849 0.90835 0.95600 0.93824 1.18225 0.92226 0.88592 0.93504 1.20641 1.21933 0.93501 1.15060 0.95314 1.25484 0.95206 1.00662 0.94944 1.70066 1.27727 1.27600 1.32589 0.86588 0.77813 0.79020 0.81196 1.21413 1.24792 1.14090 1.22079 0.96431 0.92605 0.94692 1.58559 1.06185 1.59364 1.12518 0.95150 0.92313 0.93922 0.89101 0.89058 0.80971 0.81158 0.86222 0.92967 0.97440 0.91288 0.84546 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.49 8.14 71.98 0.59 -3.90 16 2 C -0.10 -3.87 2.13 -9.94 -0.02 -3.89 16 3 H 0.08 2.94 5.33 -2.39 -0.01 2.93 16 4 C -0.06 -1.86 6.26 30.37 0.19 -1.67 16 5 C -0.17 -5.83 6.19 -19.63 -0.12 -5.96 16 6 C 0.09 2.96 11.19 84.72 0.95 3.90 16 7 N -0.51 -17.65 10.36 -195.75 -2.03 -19.68 16 8 C 0.07 2.54 11.19 84.68 0.95 3.49 16 9 C -0.14 -5.59 9.44 22.36 0.21 -5.38 16 10 C 0.00 -0.12 4.61 -19.60 -0.09 -0.21 16 11 C 0.08 3.14 0.25 -53.08 -0.01 3.12 16 12 C -0.47 -24.13 6.35 25.60 0.16 -23.97 16 13 H 0.03 1.71 7.85 -2.91 -0.02 1.69 16 14 C 0.03 1.83 3.95 84.65 0.33 2.16 16 15 N -0.94 -55.05 13.96 21.45 0.30 -54.75 16 16 Si 0.92 40.91 23.32 68.60 1.60 42.51 16 17 H -0.29 -12.45 7.08 99.48 0.70 -11.75 16 18 H -0.32 -14.89 7.11 99.48 0.71 -14.18 16 19 H -0.22 -8.34 4.08 99.48 0.41 -7.93 16 20 C 0.07 2.75 4.92 86.30 0.42 3.17 16 21 N -0.84 -29.85 8.81 -186.71 -1.65 -31.49 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.97 5.75 -2.39 -0.01 1.96 16 25 H 0.09 2.35 7.91 -2.38 -0.02 2.33 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.26 14.67 8.31 -92.72 -0.77 13.90 16 31 H 0.01 0.33 2.15 -2.38 -0.01 0.32 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.34 13.42 8.40 -89.69 -0.75 12.66 16 34 H 0.34 9.95 9.08 -89.70 -0.81 9.14 16 Total: -1.00 -61.01 260.84 1.04 -59.97 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.74 Total: 32.59 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 3.56 Total: -29.13 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -3.37 Total: -105.93 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.60 Total: 42.51 kcal Total: -61.01 1.04 -59.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.172 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds