Wall clock time and date at job start Mon Mar 30 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.87191 * 2 1 4 4 C 1.54393 * 110.81481 * 236.50983 * 2 1 3 5 5 C 1.51185 * 105.20150 * 267.93055 * 4 2 1 6 6 C 1.38342 * 131.26712 * 162.94626 * 5 4 2 7 7 N 1.31832 * 120.75246 * 180.22244 * 6 5 4 8 8 C 1.31886 * 121.78633 * 359.54126 * 7 6 5 9 9 C 1.38206 * 120.71303 * 0.43383 * 8 7 6 10 10 C 1.38460 * 109.68847 * 342.92205 * 5 4 2 11 11 C 1.51061 * 109.87634 * 0.02562 * 10 5 4 12 12 C 1.50700 * 110.39141 * 136.00544 * 11 10 5 13 13 H 1.07998 * 120.00002 * 359.16617 * 12 11 10 14 14 C 1.37880 * 119.99944 * 179.16880 * 12 11 10 15 15 N 1.31514 * 119.99732 * 8.04110 * 14 12 11 16 16 Si 1.86796 * 119.99908 * 188.04316 * 14 12 11 17 17 H 1.48500 * 109.47195 * 90.00281 * 16 14 12 18 18 H 1.48507 * 109.46791 * 209.99794 * 16 14 12 19 19 H 1.48491 * 109.47140 * 329.99738 * 16 14 12 20 20 C 1.53007 * 110.30257 * 258.11996 * 11 10 5 21 21 N 1.46895 * 109.47254 * 296.66205 * 20 11 10 22 22 H 1.08997 * 109.47493 * 189.39295 * 1 2 3 23 23 H 1.09002 * 109.47700 * 309.40173 * 1 2 3 24 24 H 1.09007 * 109.46774 * 69.39869 * 1 2 3 25 25 H 1.09002 * 110.29808 * 148.99521 * 4 2 1 26 26 H 1.09009 * 110.37776 * 26.90574 * 4 2 1 27 27 H 1.07998 * 119.62010 * 359.95025 * 6 5 4 28 28 H 1.08005 * 119.63880 * 180.20947 * 8 7 6 29 29 H 1.07995 * 120.45247 * 179.83113 * 9 8 7 30 30 H 0.97005 * 120.00058 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.46996 * 56.66350 * 20 11 10 32 32 H 1.08999 * 109.46920 * 176.65664 * 20 11 10 33 33 H 1.00899 * 111.00211 * 174.22303 * 21 20 11 34 34 H 1.00900 * 110.99664 * 298.16880 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0786 -0.7963 -1.2036 5 6 2.2687 -2.2064 -0.6925 6 6 2.4307 -3.4058 -1.3626 7 7 2.5784 -4.5347 -0.6980 8 6 2.5872 -4.5687 0.6203 9 6 2.4312 -3.4100 1.3574 10 6 2.2687 -2.2047 0.6921 11 6 2.0783 -0.7963 1.2040 12 6 1.0861 -0.7794 2.3381 13 1 0.6174 -1.6978 2.6592 14 6 0.7768 0.4086 2.9659 15 7 1.2223 1.5457 2.4777 16 14 -0.2748 0.4030 4.5097 17 1 0.5999 0.2870 5.7041 18 1 -1.0501 1.6674 4.5849 19 1 -1.2102 -0.7494 4.4672 20 6 3.4165 -0.2123 1.6616 21 7 3.9320 -0.9962 2.7918 22 1 -0.3634 -1.0138 0.1677 23 1 -0.3634 0.6523 0.7941 24 1 -0.3633 0.3616 -0.9620 25 1 3.0321 -0.3804 -1.5292 26 1 1.3617 -0.7851 -2.0247 27 1 2.4318 -3.4179 -2.4425 28 1 2.7140 -5.5127 1.1295 29 1 2.4363 -3.4431 2.4368 30 1 1.0044 2.3816 2.9191 31 1 4.1298 -0.2495 0.8382 32 1 3.2740 0.8228 1.9722 33 1 4.8576 -0.6901 3.0520 34 1 3.3023 -0.9529 3.5790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:38 Heat of formation + Delta-G solvation = 28.104934 kcal Electronic energy + Delta-G solvation = -16990.475808 eV Core-core repulsion = 14501.552280 eV Total energy + Delta-G solvation = -2488.923528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.06358 -36.98957 -33.37412 -32.16714 -30.86861 -29.86474 -27.57099 -25.95214 -24.45431 -22.61785 -21.51738 -20.06360 -18.96503 -16.46567 -15.41478 -15.29976 -14.60162 -14.30613 -14.17359 -14.01792 -13.33442 -12.91247 -12.74216 -12.53229 -12.01011 -11.74165 -11.31126 -11.29168 -10.93607 -10.72072 -10.46440 -10.24572 -10.10652 -9.72570 -9.48321 -8.99372 -8.70775 -8.45997 -8.31863 -8.03138 -7.51726 -6.14348 -4.16770 1.94204 2.26057 3.19643 3.29011 3.32952 4.30647 4.65215 5.08772 5.13619 5.38496 5.58505 5.74965 5.79372 5.98006 6.08238 6.18242 6.37023 6.43270 6.54428 6.59631 6.71698 6.81052 6.85997 6.97474 7.11110 7.27134 7.33221 7.51965 7.58733 7.63984 7.69246 7.85611 8.22729 8.33898 8.52034 8.70538 8.82127 9.43781 10.89084 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.010774 C = 0.009906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.491032 B = 2598.309099 C = 2825.820092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.061 4.061 3 H 0.077 0.923 4 C -0.080 4.080 5 C -0.164 4.164 6 C 0.088 3.912 7 N -0.505 5.505 8 C 0.070 3.930 9 C -0.136 4.136 10 C 0.014 3.986 11 C 0.110 3.890 12 C -0.491 4.491 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.082 3.918 21 N -0.846 5.846 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.016 0.984 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.129 0.871 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.314 0.686 34 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -2.470 -2.579 4.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.081 4.081 3 H 0.096 0.904 4 C -0.118 4.118 5 C -0.166 4.166 6 C -0.069 4.069 7 N -0.214 5.214 8 C -0.086 4.086 9 C -0.156 4.156 10 C 0.006 3.994 11 C 0.110 3.890 12 C -0.529 4.529 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.049 4.049 21 N -0.374 5.374 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.111 -3.683 -3.500 5.502 hybrid contribution -0.622 1.716 1.865 2.609 sum 1.489 -1.967 -1.635 2.960 Atomic orbital electron populations 1.21440 0.95260 1.01057 0.98633 1.21719 0.95843 0.98511 0.92008 0.90440 1.21242 1.00134 0.90981 0.99434 1.21718 1.02181 0.96321 0.96345 1.21931 0.98415 0.87315 0.99200 1.67541 1.14773 1.29204 1.09880 1.22485 0.98526 0.97805 0.89811 1.21589 1.00552 0.92041 1.01407 1.21252 0.88471 0.96878 0.92756 1.17843 0.93012 0.84719 0.93454 1.20863 1.23339 0.93657 1.15083 0.92430 1.24864 0.96001 0.95526 0.97079 1.69935 1.45719 0.97355 1.38957 0.86708 0.80676 0.77491 0.83931 1.20742 1.21418 1.19911 1.21652 0.94458 0.97153 0.91627 1.58772 1.05444 1.61174 1.11993 0.94274 0.90995 0.96518 0.91757 0.92082 0.84522 0.84040 0.85329 0.92975 0.95536 0.92025 0.87694 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.07 37.16 0.30 -1.98 16 2 C -0.06 -1.30 2.23 -89.15 -0.20 -1.50 16 3 H 0.08 1.75 7.64 -51.93 -0.40 1.35 16 4 C -0.08 -1.50 6.30 -26.92 -0.17 -1.67 16 5 C -0.16 -3.26 6.19 -104.26 -0.64 -3.91 16 6 C 0.09 1.65 11.19 -17.51 -0.20 1.46 16 7 N -0.50 -9.80 10.36 -13.22 -0.14 -9.93 16 8 C 0.07 1.29 11.19 -17.54 -0.20 1.10 16 9 C -0.14 -2.73 9.59 -39.45 -0.38 -3.11 16 10 C 0.01 0.31 4.67 -104.22 -0.49 -0.18 16 11 C 0.11 2.44 0.24 -155.89 -0.04 2.40 16 12 C -0.49 -11.75 5.34 -34.44 -0.18 -11.93 16 13 H 0.06 1.45 7.62 -52.49 -0.40 1.05 16 14 C 0.07 1.61 4.00 -17.82 -0.07 1.54 16 15 N -0.88 -21.65 9.91 55.43 0.55 -21.11 16 16 Si 0.88 19.52 29.54 -169.99 -5.02 14.50 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.08 1.77 5.40 -3.82 -0.02 1.75 16 21 N -0.85 -16.61 9.07 -10.37 -0.09 -16.71 16 22 H 0.04 0.86 7.84 -51.93 -0.41 0.45 16 23 H 0.07 1.68 6.11 -51.93 -0.32 1.36 16 24 H 0.02 0.31 8.08 -51.92 -0.42 -0.11 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.04 7.87 -51.92 -0.41 0.63 16 27 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 28 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.45 6.27 -51.93 -0.33 1.13 16 33 H 0.31 5.42 9.08 -39.29 -0.36 5.06 16 34 H 0.34 7.10 8.07 -39.29 -0.32 6.78 16 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -25.24 271.94 -7.49 -32.73 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.60 Total: 12.46 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.28 Total: -16.04 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.32 Total: -47.75 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.24 -7.49 -32.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.833 kcal (2) G-P(sol) polarization free energy of solvation -25.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds