Wall clock time and date at job start Mon Mar 30 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.87191 * 2 1 4 4 C 1.54393 * 110.81481 * 236.50983 * 2 1 3 5 5 C 1.51185 * 105.20150 * 267.93055 * 4 2 1 6 6 C 1.38342 * 131.26712 * 162.94626 * 5 4 2 7 7 N 1.31832 * 120.75246 * 180.22244 * 6 5 4 8 8 C 1.31886 * 121.78633 * 359.54126 * 7 6 5 9 9 C 1.38206 * 120.71303 * 0.43383 * 8 7 6 10 10 C 1.38460 * 109.68847 * 342.92205 * 5 4 2 11 11 C 1.51061 * 109.87634 * 0.02562 * 10 5 4 12 12 C 1.50700 * 110.39141 * 136.00544 * 11 10 5 13 13 H 1.07998 * 120.00002 * 359.16617 * 12 11 10 14 14 C 1.37880 * 119.99944 * 179.16880 * 12 11 10 15 15 N 1.31514 * 119.99732 * 8.04110 * 14 12 11 16 16 Si 1.86796 * 119.99908 * 188.04316 * 14 12 11 17 17 H 1.48500 * 109.47195 * 90.00281 * 16 14 12 18 18 H 1.48507 * 109.46791 * 209.99794 * 16 14 12 19 19 H 1.48491 * 109.47140 * 329.99738 * 16 14 12 20 20 C 1.53007 * 110.30257 * 258.11996 * 11 10 5 21 21 N 1.46895 * 109.47254 * 296.66205 * 20 11 10 22 22 H 1.08997 * 109.47493 * 189.39295 * 1 2 3 23 23 H 1.09002 * 109.47700 * 309.40173 * 1 2 3 24 24 H 1.09007 * 109.46774 * 69.39869 * 1 2 3 25 25 H 1.09002 * 110.29808 * 148.99521 * 4 2 1 26 26 H 1.09009 * 110.37776 * 26.90574 * 4 2 1 27 27 H 1.07998 * 119.62010 * 359.95025 * 6 5 4 28 28 H 1.08005 * 119.63880 * 180.20947 * 8 7 6 29 29 H 1.07995 * 120.45247 * 179.83113 * 9 8 7 30 30 H 0.97005 * 120.00058 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.46996 * 56.66350 * 20 11 10 32 32 H 1.08999 * 109.46920 * 176.65664 * 20 11 10 33 33 H 1.00899 * 111.00211 * 174.22303 * 21 20 11 34 34 H 1.00900 * 110.99664 * 298.16880 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0786 -0.7963 -1.2036 5 6 2.2687 -2.2064 -0.6925 6 6 2.4307 -3.4058 -1.3626 7 7 2.5784 -4.5347 -0.6980 8 6 2.5872 -4.5687 0.6203 9 6 2.4312 -3.4100 1.3574 10 6 2.2687 -2.2047 0.6921 11 6 2.0783 -0.7963 1.2040 12 6 1.0861 -0.7794 2.3381 13 1 0.6174 -1.6978 2.6592 14 6 0.7768 0.4086 2.9659 15 7 1.2223 1.5457 2.4777 16 14 -0.2748 0.4030 4.5097 17 1 0.5999 0.2870 5.7041 18 1 -1.0501 1.6674 4.5849 19 1 -1.2102 -0.7494 4.4672 20 6 3.4165 -0.2123 1.6616 21 7 3.9320 -0.9962 2.7918 22 1 -0.3634 -1.0138 0.1677 23 1 -0.3634 0.6523 0.7941 24 1 -0.3633 0.3616 -0.9620 25 1 3.0321 -0.3804 -1.5292 26 1 1.3617 -0.7851 -2.0247 27 1 2.4318 -3.4179 -2.4425 28 1 2.7140 -5.5127 1.1295 29 1 2.4363 -3.4431 2.4368 30 1 1.0044 2.3816 2.9191 31 1 4.1298 -0.2495 0.8382 32 1 3.2740 0.8228 1.9722 33 1 4.8576 -0.6901 3.0520 34 1 3.3023 -0.9529 3.5790 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:38 Heat of formation + Delta-G solvation = 13.246254 kcal Electronic energy + Delta-G solvation = -16991.120129 eV Core-core repulsion = 14501.552280 eV Total energy + Delta-G solvation = -2489.567849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60735 -38.58313 -35.02913 -33.94330 -32.39679 -31.47448 -29.23903 -27.56946 -26.23069 -24.19837 -23.07261 -21.64700 -20.65839 -18.14260 -17.15079 -16.85251 -16.32563 -15.91505 -15.71576 -15.59051 -14.98776 -14.50922 -14.33016 -14.10165 -13.62212 -13.37728 -13.07930 -13.04961 -12.69087 -12.47586 -12.04482 -11.94996 -11.78878 -11.39674 -11.18210 -10.75452 -10.31406 -10.21389 -9.89331 -9.54126 -9.16523 -8.00539 -6.05878 0.46201 0.71671 1.40566 1.47515 1.52623 2.47417 3.14642 3.25544 3.72165 3.88116 4.00847 4.18837 4.33062 4.44945 4.53539 4.65588 4.82034 4.87324 4.91696 5.06359 5.11850 5.14846 5.21443 5.36286 5.46001 5.55716 5.67593 5.80075 5.88090 6.02679 6.03386 6.09186 6.46119 6.64606 6.84671 7.03314 7.23164 7.55524 9.00708 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.010774 C = 0.009906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.491032 B = 2598.309099 C = 2825.820092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.064 4.064 3 H 0.060 0.940 4 C -0.071 4.071 5 C -0.173 4.173 6 C 0.090 3.910 7 N -0.513 5.513 8 C 0.073 3.927 9 C -0.149 4.149 10 C -0.010 4.010 11 C 0.106 3.894 12 C -0.491 4.491 13 H 0.039 0.961 14 C 0.042 3.958 15 N -0.893 5.893 16 Si 0.926 3.074 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.281 1.281 20 C 0.091 3.909 21 N -0.840 5.840 22 H 0.025 0.975 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.125 0.875 30 H 0.257 0.743 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.328 0.672 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -3.371 -3.482 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.175 4.175 6 C -0.067 4.067 7 N -0.222 5.222 8 C -0.082 4.082 9 C -0.169 4.169 10 C -0.018 4.018 11 C 0.105 3.895 12 C -0.530 4.530 13 H 0.057 0.943 14 C -0.158 4.158 15 N -0.532 5.532 16 Si 0.754 3.246 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.206 1.206 20 C -0.040 4.040 21 N -0.368 5.368 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.186 0.814 28 H 0.190 0.810 29 H 0.143 0.857 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.460 -4.587 -4.399 6.815 hybrid contribution -0.721 1.959 2.151 2.998 sum 1.739 -2.628 -2.248 3.871 Atomic orbital electron populations 1.21310 0.95542 0.99611 0.98965 1.21636 0.95576 0.97869 0.93241 0.92130 1.21153 1.01173 0.89891 0.98670 1.21880 1.02539 0.97255 0.95831 1.22398 0.97011 0.86579 1.00698 1.67654 1.14999 1.29449 1.10144 1.22930 0.97066 0.98507 0.89721 1.21679 1.01333 0.92423 1.01457 1.21311 0.89899 0.96719 0.93824 1.17837 0.92597 0.85848 0.93183 1.20868 1.23548 0.92755 1.15785 0.94283 1.25202 0.96741 0.95421 0.98476 1.70014 1.46384 0.97373 1.39423 0.86065 0.79551 0.76722 0.82264 1.20441 1.21873 1.20596 1.21477 0.94510 0.95979 0.92074 1.58723 1.06051 1.60716 1.11346 0.95560 0.93509 0.94177 0.90443 0.90052 0.81438 0.80978 0.85680 0.93323 0.95405 0.94323 0.86131 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.10 8.07 71.98 0.58 -3.52 16 2 C -0.06 -2.66 2.23 -9.84 -0.02 -2.68 16 3 H 0.06 2.72 7.64 -2.39 -0.02 2.70 16 4 C -0.07 -2.51 6.30 30.47 0.19 -2.32 16 5 C -0.17 -6.54 6.19 -19.63 -0.12 -6.66 16 6 C 0.09 3.09 11.19 84.72 0.95 4.04 16 7 N -0.51 -18.48 10.36 -195.75 -2.03 -20.50 16 8 C 0.07 2.56 11.19 84.68 0.95 3.51 16 9 C -0.15 -5.81 9.59 22.36 0.21 -5.60 16 10 C -0.01 -0.40 4.67 -19.60 -0.09 -0.49 16 11 C 0.11 4.65 0.24 -53.08 -0.01 4.64 16 12 C -0.49 -23.64 5.34 25.60 0.14 -23.51 16 13 H 0.04 1.99 7.62 -2.91 -0.02 1.97 16 14 C 0.04 2.02 4.00 84.66 0.34 2.36 16 15 N -0.89 -44.29 9.91 21.45 0.21 -44.07 16 16 Si 0.93 40.29 29.54 68.60 2.03 42.32 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 C 0.09 3.90 5.40 86.31 0.47 4.37 16 21 N -0.84 -32.57 9.07 -186.72 -1.69 -34.27 16 22 H 0.03 1.13 7.84 -2.39 -0.02 1.11 16 23 H 0.05 2.19 6.11 -2.39 -0.01 2.17 16 24 H 0.04 1.46 8.08 -2.38 -0.02 1.44 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.08 2.52 7.87 -2.38 -0.02 2.50 16 27 H 0.17 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.17 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.26 12.58 8.31 -92.70 -0.77 11.81 16 31 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.04 1.84 6.27 -2.39 -0.01 1.82 16 33 H 0.33 11.04 9.08 -89.69 -0.81 10.22 16 34 H 0.34 13.93 8.07 -89.69 -0.72 13.21 16 Total: -1.00 -52.36 271.94 1.67 -50.69 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.42 Total: 31.69 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.58 Total: -25.86 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.51 Total: -98.84 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -52.36 1.67 -50.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.933 kcal (2) G-P(sol) polarization free energy of solvation -52.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds