Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48535 * 111.00182 * 2 1 4 4 C 1.54938 * 103.22642 * 200.27741 * 3 2 1 5 5 C 1.54596 * 102.92083 * 37.41106 * 4 3 2 6 6 C 1.50706 * 110.39029 * 97.00174 * 5 4 3 7 7 H 1.08000 * 120.00116 * 6.74093 * 6 5 4 8 8 C 1.37883 * 119.99881 * 186.74095 * 6 5 4 9 9 N 1.31514 * 119.99832 * 5.91292 * 8 6 5 10 10 Si 1.86796 * 119.99900 * 185.91218 * 8 6 5 11 11 H 1.48497 * 109.47032 * 90.00341 * 10 8 6 12 12 H 1.48507 * 109.46874 * 210.00230 * 10 8 6 13 13 H 1.48496 * 109.47329 * 330.00231 * 10 8 6 14 14 C 1.50700 * 110.30826 * 219.12360 * 5 4 3 15 15 C 1.38668 * 120.42075 * 242.54278 * 14 5 4 16 16 C 1.38633 * 118.42270 * 179.97438 * 15 14 5 17 17 C 1.38220 * 119.15976 * 359.97438 * 16 15 14 18 18 N 1.31864 * 120.76182 * 359.72759 * 17 16 15 19 19 C 1.31877 * 121.72604 * 0.56521 * 18 17 16 20 20 C 1.47899 * 111.00271 * 242.59968 * 2 1 3 21 21 H 1.09001 * 109.47063 * 177.39950 * 1 2 3 22 22 H 1.08999 * 109.46977 * 297.39699 * 1 2 3 23 23 H 1.09002 * 109.46666 * 57.40193 * 1 2 3 24 24 H 1.09001 * 110.66105 * 318.71046 * 3 2 1 25 25 H 1.08992 * 110.66836 * 81.67548 * 3 2 1 26 26 H 1.08998 * 110.72101 * 279.05264 * 4 3 2 27 27 H 1.08997 * 110.72138 * 155.77172 * 4 3 2 28 28 H 0.96997 * 120.00065 * 179.97438 * 9 8 6 29 29 H 1.08006 * 120.78900 * 0.02562 * 15 14 5 30 30 H 1.07998 * 120.42031 * 180.02562 * 16 15 14 31 31 H 1.07994 * 119.61758 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.61815 * 179.70903 * 19 18 17 33 33 H 1.09002 * 109.91451 * 26.49350 * 20 2 1 34 34 H 1.08997 * 109.92074 * 265.20081 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4493 1.2106 -0.5227 5 6 3.2984 0.1052 -1.5929 6 6 3.1822 0.7159 -2.9658 7 1 3.3199 1.7790 -3.0974 8 6 2.9002 -0.0826 -4.0540 9 7 2.6180 -1.3553 -3.8801 10 14 2.9191 0.6433 -5.7750 11 1 4.2825 0.5181 -6.3501 12 1 1.9514 -0.0884 -6.6315 13 1 2.5384 2.0772 -5.7117 14 6 4.4718 -0.8388 -1.5389 15 6 5.3219 -0.9653 -2.6271 16 6 6.3888 -1.8455 -2.5323 17 6 6.5687 -2.5623 -1.3642 18 7 5.7433 -2.4121 -0.3469 19 6 4.7151 -1.5883 -0.4038 20 6 1.9991 -0.6354 -1.2258 21 1 -0.3633 -1.0266 -0.0466 22 1 -0.3633 0.4729 0.9124 23 1 -0.3633 0.5537 -0.8658 24 1 1.4238 2.0204 -0.6730 25 1 2.0014 1.7987 1.0090 26 1 4.1116 0.8836 0.2788 27 1 3.8124 2.1351 -0.9715 28 1 2.4192 -1.9169 -4.6455 29 1 5.1573 -0.3911 -3.5270 30 1 7.0711 -1.9689 -3.3602 31 1 7.3975 -3.2496 -1.2822 32 1 4.0578 -1.4953 0.4482 33 1 1.2759 -0.5403 -2.0358 34 1 2.2123 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = 40.855968 kcal Electronic energy + Delta-G solvation = -16816.459125 eV Core-core repulsion = 14328.088523 eV Total energy + Delta-G solvation = -2488.370602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51291 -37.70148 -33.86554 -31.59337 -31.02045 -29.53831 -27.40541 -25.76290 -24.13583 -22.29033 -21.91355 -20.19812 -19.06483 -16.79355 -16.03802 -15.13654 -14.90101 -14.54509 -14.36816 -13.68023 -13.27323 -12.95567 -12.72814 -12.44598 -12.01338 -11.90776 -11.42771 -11.16764 -10.93602 -10.81993 -10.66232 -10.56540 -10.46064 -9.81870 -9.61160 -9.32204 -8.79631 -8.52415 -8.37432 -7.75343 -7.54273 -6.20635 -4.28858 2.14538 2.44334 3.15684 3.25507 3.27293 4.24250 4.83803 4.95258 5.05237 5.34859 5.66861 5.77361 5.80643 5.88450 6.07339 6.10284 6.18364 6.20834 6.29371 6.35494 6.44315 6.61829 6.64614 6.80908 6.89816 6.97702 7.09594 7.33589 7.43200 7.62393 7.69087 7.75769 7.84210 7.95683 8.28416 8.75589 8.91428 9.35389 10.83635 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.015776 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.608834 B = 1774.438194 C = 3015.703393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.042 3.958 4 C -0.110 4.110 5 C 0.100 3.900 6 C -0.518 4.518 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.870 5.870 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.059 4.059 15 C -0.034 4.034 16 C -0.193 4.193 17 C 0.060 3.940 18 N -0.501 5.501 19 C 0.076 3.924 20 C 0.074 3.926 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.023 0.977 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.264 0.736 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.060 0.940 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 2.027 3.063 3.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.260 5.260 3 C -0.086 4.086 4 C -0.148 4.148 5 C 0.098 3.902 6 C -0.556 4.556 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.506 5.506 10 Si 0.711 3.289 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.061 4.061 15 C -0.060 4.060 16 C -0.213 4.213 17 C -0.097 4.097 18 N -0.210 5.210 19 C -0.080 4.080 20 C -0.053 4.053 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.302 1.064 4.187 4.512 hybrid contribution -0.540 1.049 -2.710 2.956 sum 0.762 2.113 1.477 2.688 Atomic orbital electron populations 1.22385 0.89738 1.01048 0.99543 1.64832 1.06734 1.14609 1.39863 1.23066 0.96193 0.90446 0.98862 1.22611 0.94992 0.99470 0.97699 1.17945 0.88613 0.89548 0.94102 1.21073 1.49736 0.94251 0.90565 0.92006 1.24979 0.94699 0.94914 0.98980 1.70010 1.44769 1.05084 1.30755 0.86712 0.78155 0.79453 0.84582 1.20371 1.21143 1.19783 1.21263 0.96260 0.96142 0.92480 1.21733 0.90830 0.94517 0.98939 1.22063 1.00175 1.00052 0.98998 1.22320 0.98274 0.99021 0.90053 1.67520 1.04661 1.18488 1.30346 1.22596 0.94372 0.93046 0.98001 1.22895 0.97276 0.97079 0.88007 0.92224 0.92710 0.95839 0.94185 0.91961 0.92718 0.91853 0.92640 0.84325 0.86729 0.84695 0.83774 0.92214 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.40 60.07 0.56 0.94 16 2 N -0.54 -10.58 5.55 -238.72 -1.33 -11.90 16 3 C 0.04 0.78 6.56 -1.90 -0.01 0.77 16 4 C -0.11 -2.18 6.07 -24.87 -0.15 -2.33 16 5 C 0.10 2.25 0.48 -155.45 -0.08 2.18 16 6 C -0.52 -12.66 6.79 -34.44 -0.23 -12.89 16 7 H 0.06 1.52 7.51 -52.49 -0.39 1.13 16 8 C 0.07 1.69 3.36 -17.82 -0.06 1.63 16 9 N -0.87 -22.48 10.80 55.43 0.60 -21.88 16 10 Si 0.88 19.55 29.54 -169.99 -5.02 14.53 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 14 C -0.06 -1.34 4.28 -104.48 -0.45 -1.78 16 15 C -0.03 -0.77 8.36 -39.28 -0.33 -1.10 16 16 C -0.19 -3.79 10.11 -39.44 -0.40 -4.19 16 17 C 0.06 1.17 11.18 -17.54 -0.20 0.97 16 18 N -0.50 -10.66 10.36 -13.26 -0.14 -10.80 16 19 C 0.08 1.65 9.24 -17.55 -0.16 1.49 16 20 C 0.07 1.69 4.59 -2.76 -0.01 1.68 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 24 H 0.04 0.76 7.96 -51.93 -0.41 0.34 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.05 7.32 -51.93 -0.38 0.67 16 27 H 0.06 1.23 7.65 -51.93 -0.40 0.83 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.14 3.26 5.73 -52.48 -0.30 2.96 16 30 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.14 3.03 7.91 -52.49 -0.42 2.62 16 33 H 0.06 1.51 6.38 -51.93 -0.33 1.18 16 34 H 0.06 1.41 7.14 -51.93 -0.37 1.04 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -26.16 272.45 -7.96 -34.12 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.67 Total: 4.46 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.51 Total: -12.64 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.86 Total: -44.58 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.16 -7.96 -34.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.977 kcal (2) G-P(sol) polarization free energy of solvation -26.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds