Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48535 * 111.00182 * 2 1 4 4 C 1.54938 * 103.22642 * 200.27741 * 3 2 1 5 5 C 1.54596 * 102.92083 * 37.41106 * 4 3 2 6 6 C 1.50706 * 110.39029 * 97.00174 * 5 4 3 7 7 H 1.08000 * 120.00116 * 6.74093 * 6 5 4 8 8 C 1.37883 * 119.99881 * 186.74095 * 6 5 4 9 9 N 1.31514 * 119.99832 * 5.91292 * 8 6 5 10 10 Si 1.86796 * 119.99900 * 185.91218 * 8 6 5 11 11 H 1.48497 * 109.47032 * 90.00341 * 10 8 6 12 12 H 1.48507 * 109.46874 * 210.00230 * 10 8 6 13 13 H 1.48496 * 109.47329 * 330.00231 * 10 8 6 14 14 C 1.50700 * 110.30826 * 219.12360 * 5 4 3 15 15 C 1.38668 * 120.42075 * 242.54278 * 14 5 4 16 16 C 1.38633 * 118.42270 * 179.97438 * 15 14 5 17 17 C 1.38220 * 119.15976 * 359.97438 * 16 15 14 18 18 N 1.31864 * 120.76182 * 359.72759 * 17 16 15 19 19 C 1.31877 * 121.72604 * 0.56521 * 18 17 16 20 20 C 1.47899 * 111.00271 * 242.59968 * 2 1 3 21 21 H 1.09001 * 109.47063 * 177.39950 * 1 2 3 22 22 H 1.08999 * 109.46977 * 297.39699 * 1 2 3 23 23 H 1.09002 * 109.46666 * 57.40193 * 1 2 3 24 24 H 1.09001 * 110.66105 * 318.71046 * 3 2 1 25 25 H 1.08992 * 110.66836 * 81.67548 * 3 2 1 26 26 H 1.08998 * 110.72101 * 279.05264 * 4 3 2 27 27 H 1.08997 * 110.72138 * 155.77172 * 4 3 2 28 28 H 0.96997 * 120.00065 * 179.97438 * 9 8 6 29 29 H 1.08006 * 120.78900 * 0.02562 * 15 14 5 30 30 H 1.07998 * 120.42031 * 180.02562 * 16 15 14 31 31 H 1.07994 * 119.61758 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.61815 * 179.70903 * 19 18 17 33 33 H 1.09002 * 109.91451 * 26.49350 * 20 2 1 34 34 H 1.08997 * 109.92074 * 265.20081 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4493 1.2106 -0.5227 5 6 3.2984 0.1052 -1.5929 6 6 3.1822 0.7159 -2.9658 7 1 3.3199 1.7790 -3.0974 8 6 2.9002 -0.0826 -4.0540 9 7 2.6180 -1.3553 -3.8801 10 14 2.9191 0.6433 -5.7750 11 1 4.2825 0.5181 -6.3501 12 1 1.9514 -0.0884 -6.6315 13 1 2.5384 2.0772 -5.7117 14 6 4.4718 -0.8388 -1.5389 15 6 5.3219 -0.9653 -2.6271 16 6 6.3888 -1.8455 -2.5323 17 6 6.5687 -2.5623 -1.3642 18 7 5.7433 -2.4121 -0.3469 19 6 4.7151 -1.5883 -0.4038 20 6 1.9991 -0.6354 -1.2258 21 1 -0.3633 -1.0266 -0.0466 22 1 -0.3633 0.4729 0.9124 23 1 -0.3633 0.5537 -0.8658 24 1 1.4238 2.0204 -0.6730 25 1 2.0014 1.7987 1.0090 26 1 4.1116 0.8836 0.2788 27 1 3.8124 2.1351 -0.9715 28 1 2.4192 -1.9169 -4.6455 29 1 5.1573 -0.3911 -3.5270 30 1 7.0711 -1.9689 -3.3602 31 1 7.3975 -3.2496 -1.2822 32 1 4.0578 -1.4953 0.4482 33 1 1.2759 -0.5403 -2.0358 34 1 2.2123 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = 24.758513 kcal Electronic energy + Delta-G solvation = -16817.157163 eV Core-core repulsion = 14328.088523 eV Total energy + Delta-G solvation = -2489.068640 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15908 -39.31499 -35.58898 -33.35678 -32.64922 -31.11106 -29.10883 -27.48894 -25.77142 -23.93509 -23.55092 -21.77694 -20.80343 -18.57462 -17.68183 -16.87891 -16.51235 -16.29219 -15.94120 -15.28164 -14.84478 -14.56934 -14.34713 -14.06509 -13.71341 -13.56406 -13.10715 -12.84639 -12.69796 -12.51799 -12.23190 -12.14614 -12.11314 -11.52798 -11.34669 -11.07077 -10.61126 -10.21676 -10.04469 -9.40051 -9.18231 -8.10652 -6.23011 0.53412 0.78025 1.37940 1.43467 1.49253 2.39968 3.14955 3.21021 3.40254 3.81872 4.11924 4.28853 4.30063 4.32226 4.52922 4.56876 4.62135 4.67587 4.72848 4.91320 4.95871 4.99762 5.00691 5.16566 5.27289 5.33992 5.40631 5.60547 5.64526 5.79063 5.96100 6.09527 6.18297 6.34389 6.44279 6.87489 7.29324 7.43451 8.92202 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.015776 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.608834 B = 1774.438194 C = 3015.703393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.047 3.953 4 C -0.107 4.107 5 C 0.091 3.909 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.038 3.962 9 N -0.893 5.893 10 Si 0.932 3.068 11 H -0.273 1.273 12 H -0.291 1.291 13 H -0.272 1.272 14 C -0.075 4.075 15 C -0.056 4.056 16 C -0.188 4.188 17 C 0.062 3.938 18 N -0.512 5.512 19 C 0.069 3.931 20 C 0.093 3.907 21 H 0.060 0.940 22 H 0.085 0.915 23 H 0.015 0.985 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.259 0.741 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.176 0.824 32 H 0.146 0.854 33 H 0.027 0.973 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 2.269 3.615 4.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.081 4.081 4 C -0.144 4.144 5 C 0.089 3.911 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.164 4.164 9 N -0.530 5.530 10 Si 0.759 3.241 11 H -0.198 1.198 12 H -0.217 1.217 13 H -0.197 1.197 14 C -0.077 4.077 15 C -0.082 4.082 16 C -0.208 4.208 17 C -0.095 4.095 18 N -0.221 5.221 19 C -0.087 4.087 20 C -0.035 4.035 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.193 0.807 32 H 0.163 0.837 33 H 0.045 0.955 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.053 1.325 4.749 5.341 hybrid contribution -0.748 0.960 -2.868 3.115 sum 1.306 2.286 1.881 3.236 Atomic orbital electron populations 1.22454 0.88029 1.01468 1.00715 1.64814 1.08402 1.15309 1.37850 1.23110 0.94915 0.89637 1.00414 1.22578 0.96192 0.98556 0.97120 1.17996 0.88658 0.90416 0.94033 1.21263 1.49212 0.93936 0.91821 0.92698 1.25436 0.94486 0.95056 1.01409 1.70124 1.45871 1.05965 1.30997 0.85952 0.78040 0.78665 0.81464 1.19819 1.21687 1.19687 1.21284 0.96542 0.96780 0.93113 1.21741 0.92327 0.95767 0.98377 1.22379 0.99534 0.98678 1.00191 1.22964 0.98519 0.98850 0.89142 1.67565 1.04838 1.18405 1.31310 1.22575 0.94893 0.93386 0.97838 1.22519 0.96780 0.96042 0.88112 0.92125 0.89618 0.96631 0.94712 0.88866 0.92086 0.91737 0.93160 0.86023 0.83588 0.80682 0.83705 0.95480 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.40 127.69 1.20 1.93 16 2 N -0.54 -20.85 5.55 -909.16 -5.05 -25.89 16 3 C 0.05 1.66 6.56 86.65 0.57 2.23 16 4 C -0.11 -4.15 6.07 31.80 0.19 -3.96 16 5 C 0.09 4.13 0.48 -52.79 -0.03 4.10 16 6 C -0.52 -25.91 6.79 25.60 0.17 -25.74 16 7 H 0.05 2.72 7.51 -2.91 -0.02 2.70 16 8 C 0.04 1.89 3.36 84.66 0.28 2.18 16 9 N -0.89 -47.03 10.80 21.45 0.23 -46.80 16 10 Si 0.93 40.37 29.54 68.60 2.03 42.40 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 14 C -0.07 -3.39 4.28 -19.77 -0.08 -3.47 16 15 C -0.06 -2.50 8.36 22.47 0.19 -2.31 16 16 C -0.19 -7.03 10.11 22.36 0.23 -6.80 16 17 C 0.06 2.24 11.18 84.68 0.95 3.19 16 18 N -0.51 -21.01 10.36 -195.85 -2.03 -23.04 16 19 C 0.07 2.97 9.24 84.67 0.78 3.75 16 20 C 0.09 4.31 4.59 86.45 0.40 4.71 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.02 0.53 8.00 -2.39 -0.02 0.51 16 24 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 25 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.28 7.32 -2.39 -0.02 2.26 16 27 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 28 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 29 H 0.12 5.77 5.73 -2.91 -0.02 5.75 16 30 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.15 6.08 7.91 -2.91 -0.02 6.06 16 33 H 0.03 1.40 6.38 -2.39 -0.02 1.39 16 34 H 0.03 1.66 7.14 -2.39 -0.02 1.64 16 Total: -1.00 -55.67 272.45 1.11 -54.57 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.08 Total: 18.96 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.85 Total: -20.20 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -6.85 Total: -95.73 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -55.67 1.11 -54.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.324 kcal (2) G-P(sol) polarization free energy of solvation -55.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds