Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48527 * 110.99725 * 2 1 4 4 C 1.54941 * 103.37852 * 159.64016 * 3 2 1 5 5 C 1.54787 * 102.83218 * 322.80002 * 4 3 2 6 6 C 1.50696 * 110.23366 * 262.80553 * 5 4 3 7 7 H 1.07999 * 120.00201 * 350.70695 * 6 5 4 8 8 C 1.37877 * 119.99805 * 170.70626 * 6 5 4 9 9 N 1.31519 * 120.00154 * 197.83038 * 8 6 5 10 10 Si 1.86811 * 120.00047 * 17.83488 * 8 6 5 11 11 H 1.48492 * 109.46892 * 84.73070 * 10 8 6 12 12 H 1.48493 * 109.47023 * 204.73304 * 10 8 6 13 13 H 1.48499 * 109.46852 * 324.73306 * 10 8 6 14 14 C 1.50693 * 110.39427 * 140.72433 * 5 4 3 15 15 C 1.38679 * 120.41485 * 116.63235 * 14 5 4 16 16 C 1.38633 * 118.41664 * 179.78355 * 15 14 5 17 17 C 1.38225 * 119.15984 * 0.47031 * 16 15 14 18 18 N 1.31850 * 120.76850 * 359.77146 * 17 16 15 19 19 C 1.31883 * 121.72531 * 0.02562 * 18 17 16 20 20 C 1.47898 * 111.00056 * 117.39591 * 2 1 3 21 21 H 1.08999 * 109.47529 * 60.12475 * 1 2 3 22 22 H 1.09003 * 109.47196 * 180.12207 * 1 2 3 23 23 H 1.08995 * 109.47175 * 300.12476 * 1 2 3 24 24 H 1.09002 * 110.67176 * 278.15276 * 3 2 1 25 25 H 1.08999 * 110.67076 * 41.12061 * 3 2 1 26 26 H 1.09000 * 110.72273 * 81.02428 * 4 3 2 27 27 H 1.09002 * 110.72294 * 204.31343 * 4 3 2 28 28 H 0.97003 * 119.99667 * 179.97438 * 9 8 6 29 29 H 1.07989 * 120.79275 * 0.02562 * 15 14 5 30 30 H 1.07999 * 120.41800 * 180.22103 * 16 15 14 31 31 H 1.08008 * 119.61556 * 179.78891 * 17 16 15 32 32 H 1.07999 * 119.62404 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.92045 * 333.51187 * 20 2 1 34 34 H 1.09007 * 109.91660 * 94.60785 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2150 0.5244 5 6 3.2983 0.1053 1.5930 6 6 3.1821 0.7161 2.9658 7 1 3.3602 1.7723 3.1037 8 6 2.8484 -0.0736 4.0456 9 7 2.4063 0.4801 5.1536 10 14 3.0244 -1.9301 3.9350 11 1 4.4215 -2.3150 4.2590 12 1 2.0971 -2.5736 4.8999 13 1 2.6944 -2.3773 2.5579 14 6 4.4717 -0.8387 1.5390 15 6 5.3300 -0.9545 2.6220 16 6 6.3936 -1.8389 2.5293 17 6 6.5676 -2.5633 1.3650 18 7 5.7341 -2.4238 0.3528 19 6 4.7096 -1.5951 0.4073 20 6 1.9991 -0.6353 1.2259 21 1 -0.3634 0.5119 -0.8911 22 1 -0.3634 -1.0277 0.0022 23 1 -0.3633 0.5157 0.8888 24 1 2.0041 1.7977 -1.0095 25 1 1.4219 2.0211 0.6707 26 1 4.1133 0.8899 -0.2763 27 1 3.8088 2.1406 0.9737 28 1 2.1712 -0.0756 5.9132 29 1 5.1714 -0.3726 3.5178 30 1 7.0798 -1.9573 3.3547 31 1 7.3957 -3.2518 1.2834 32 1 4.0478 -1.5079 -0.4417 33 1 1.2759 -0.5403 2.0358 34 1 2.2090 -1.6883 1.0374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 55.440150 kcal Electronic energy + Delta-G solvation = -16958.163457 eV Core-core repulsion = 14470.425273 eV Total energy + Delta-G solvation = -2487.738184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96421 -37.97462 -33.97071 -31.92099 -31.43495 -29.81668 -27.99579 -25.86043 -24.24388 -22.51966 -22.16032 -20.55983 -19.15075 -17.20694 -16.26600 -15.51153 -15.17727 -14.60944 -14.45660 -13.79475 -13.49174 -13.32658 -12.96032 -12.86628 -12.37585 -12.16176 -11.54652 -11.46249 -11.15843 -11.00712 -10.75356 -10.56426 -10.13211 -10.09081 -9.68550 -9.48195 -8.88693 -8.70626 -8.46611 -8.07357 -7.81525 -6.31994 -4.28043 1.77945 2.01514 3.17590 3.31048 3.36042 4.26020 4.47946 4.72888 4.89921 5.08346 5.46805 5.52126 5.62306 5.66385 5.79467 5.90092 5.91708 5.97595 6.05952 6.22855 6.24763 6.29980 6.32201 6.54581 6.65802 6.70857 6.73522 6.98639 7.01225 7.24555 7.36326 7.46593 7.64737 7.70722 8.32019 8.59739 8.75949 9.32644 10.78531 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.014989 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.793761 B = 1867.553665 C = 2599.964267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.527 5.527 3 C 0.041 3.959 4 C -0.098 4.098 5 C 0.074 3.926 6 C -0.518 4.518 7 H 0.079 0.921 8 C 0.084 3.916 9 N -0.879 5.879 10 Si 0.838 3.162 11 H -0.262 1.262 12 H -0.297 1.297 13 H -0.246 1.246 14 C -0.099 4.099 15 C -0.065 4.065 16 C -0.184 4.184 17 C 0.068 3.932 18 N -0.496 5.496 19 C 0.087 3.913 20 C 0.043 3.957 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.266 0.734 29 H 0.152 0.848 30 H 0.123 0.877 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.052 0.948 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -2.051 -6.629 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.251 5.251 3 C -0.087 4.087 4 C -0.136 4.136 5 C 0.072 3.928 6 C -0.555 4.555 7 H 0.097 0.903 8 C -0.120 4.120 9 N -0.515 5.515 10 Si 0.666 3.334 11 H -0.188 1.188 12 H -0.224 1.224 13 H -0.170 1.170 14 C -0.101 4.101 15 C -0.090 4.090 16 C -0.204 4.204 17 C -0.089 4.089 18 N -0.205 5.205 19 C -0.070 4.070 20 C -0.084 4.084 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.170 0.830 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.070 0.930 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.114 -2.856 -7.655 8.440 hybrid contribution -0.419 -0.194 1.837 1.894 sum 1.695 -3.049 -5.818 6.784 Atomic orbital electron populations 1.22446 0.89257 1.01269 1.00202 1.64798 1.07124 1.15156 1.38037 1.23113 0.96154 0.90048 0.99363 1.22504 0.95101 0.99058 0.96929 1.18346 0.87704 0.90306 0.96426 1.20816 1.48916 0.96726 0.89013 0.90276 1.25008 0.93496 0.98096 0.95443 1.69986 1.40562 1.36248 1.04666 0.87837 0.78729 0.87221 0.79625 1.18817 1.22441 1.16996 1.21534 0.98043 0.97273 0.93262 1.21951 0.91962 0.95405 0.99684 1.22130 0.99836 0.99115 0.99292 1.22488 0.98004 0.98611 0.89780 1.67591 1.04321 1.18585 1.30037 1.22714 0.94272 0.92240 0.97751 1.23661 0.97245 0.97730 0.89794 0.92171 0.92160 0.95291 0.91483 0.93531 0.92516 0.91161 0.92356 0.83032 0.85922 0.83985 0.83078 0.92971 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.41 60.07 0.57 0.85 16 2 N -0.53 -9.80 5.56 -238.72 -1.33 -11.13 16 3 C 0.04 0.73 6.55 -1.90 -0.01 0.71 16 4 C -0.10 -1.87 6.09 -24.77 -0.15 -2.02 16 5 C 0.07 1.62 0.48 -155.36 -0.07 1.54 16 6 C -0.52 -13.16 7.32 -34.44 -0.25 -13.42 16 7 H 0.08 2.20 7.74 -52.49 -0.41 1.79 16 8 C 0.08 2.22 4.39 -17.82 -0.08 2.14 16 9 N -0.88 -25.06 13.96 55.43 0.77 -24.28 16 10 Si 0.84 20.12 22.39 -169.99 -3.81 16.31 16 11 H -0.26 -6.11 5.87 56.52 0.33 -5.77 16 12 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.25 -5.76 4.31 56.52 0.24 -5.52 16 14 C -0.10 -2.09 2.98 -104.48 -0.31 -2.40 16 15 C -0.06 -1.37 5.59 -39.27 -0.22 -1.59 16 16 C -0.18 -3.38 9.78 -39.44 -0.39 -3.77 16 17 C 0.07 1.20 11.18 -17.55 -0.20 1.00 16 18 N -0.50 -9.71 10.36 -13.25 -0.14 -9.85 16 19 C 0.09 1.74 9.27 -17.55 -0.16 1.58 16 20 C 0.04 0.92 3.83 -2.76 -0.01 0.91 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.03 0.49 7.99 -51.93 -0.42 0.07 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.87 7.99 -51.93 -0.42 0.45 16 26 H 0.06 1.02 7.35 -51.93 -0.38 0.64 16 27 H 0.07 1.35 7.64 -51.93 -0.40 0.95 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.15 3.46 5.46 -52.49 -0.29 3.17 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 32 H 0.15 2.87 7.89 -52.49 -0.41 2.46 16 33 H 0.05 1.22 6.22 -51.93 -0.32 0.90 16 34 H 0.06 1.40 5.58 -51.92 -0.29 1.11 16 LS Contribution 259.12 15.07 3.90 3.90 Total: -1.00 -28.11 259.12 -6.68 -34.79 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.80 Total: 4.72 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.29 Total: -14.47 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.69 Total: -45.26 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -3.81 Total: 16.31 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.11 -6.68 -34.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.230 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds