Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48527 * 110.99725 * 2 1 4 4 C 1.54941 * 103.37852 * 159.64016 * 3 2 1 5 5 C 1.54787 * 102.83218 * 322.80002 * 4 3 2 6 6 C 1.50696 * 110.23366 * 262.80553 * 5 4 3 7 7 H 1.07999 * 120.00201 * 350.70695 * 6 5 4 8 8 C 1.37877 * 119.99805 * 170.70626 * 6 5 4 9 9 N 1.31519 * 120.00154 * 197.83038 * 8 6 5 10 10 Si 1.86811 * 120.00047 * 17.83488 * 8 6 5 11 11 H 1.48492 * 109.46892 * 84.73070 * 10 8 6 12 12 H 1.48493 * 109.47023 * 204.73304 * 10 8 6 13 13 H 1.48499 * 109.46852 * 324.73306 * 10 8 6 14 14 C 1.50693 * 110.39427 * 140.72433 * 5 4 3 15 15 C 1.38679 * 120.41485 * 116.63235 * 14 5 4 16 16 C 1.38633 * 118.41664 * 179.78355 * 15 14 5 17 17 C 1.38225 * 119.15984 * 0.47031 * 16 15 14 18 18 N 1.31850 * 120.76850 * 359.77146 * 17 16 15 19 19 C 1.31883 * 121.72531 * 0.02562 * 18 17 16 20 20 C 1.47898 * 111.00056 * 117.39591 * 2 1 3 21 21 H 1.08999 * 109.47529 * 60.12475 * 1 2 3 22 22 H 1.09003 * 109.47196 * 180.12207 * 1 2 3 23 23 H 1.08995 * 109.47175 * 300.12476 * 1 2 3 24 24 H 1.09002 * 110.67176 * 278.15276 * 3 2 1 25 25 H 1.08999 * 110.67076 * 41.12061 * 3 2 1 26 26 H 1.09000 * 110.72273 * 81.02428 * 4 3 2 27 27 H 1.09002 * 110.72294 * 204.31343 * 4 3 2 28 28 H 0.97003 * 119.99667 * 179.97438 * 9 8 6 29 29 H 1.07989 * 120.79275 * 0.02562 * 15 14 5 30 30 H 1.07999 * 120.41800 * 180.22103 * 16 15 14 31 31 H 1.08008 * 119.61556 * 179.78891 * 17 16 15 32 32 H 1.07999 * 119.62404 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.92045 * 333.51187 * 20 2 1 34 34 H 1.09007 * 109.91660 * 94.60785 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2150 0.5244 5 6 3.2983 0.1053 1.5930 6 6 3.1821 0.7161 2.9658 7 1 3.3602 1.7723 3.1037 8 6 2.8484 -0.0736 4.0456 9 7 2.4063 0.4801 5.1536 10 14 3.0244 -1.9301 3.9350 11 1 4.4215 -2.3150 4.2590 12 1 2.0971 -2.5736 4.8999 13 1 2.6944 -2.3773 2.5579 14 6 4.4717 -0.8387 1.5390 15 6 5.3300 -0.9545 2.6220 16 6 6.3936 -1.8389 2.5293 17 6 6.5676 -2.5633 1.3650 18 7 5.7341 -2.4238 0.3528 19 6 4.7096 -1.5951 0.4073 20 6 1.9991 -0.6353 1.2259 21 1 -0.3634 0.5119 -0.8911 22 1 -0.3634 -1.0277 0.0022 23 1 -0.3633 0.5157 0.8888 24 1 2.0041 1.7977 -1.0095 25 1 1.4219 2.0211 0.6707 26 1 4.1133 0.8899 -0.2763 27 1 3.8088 2.1406 0.9737 28 1 2.1712 -0.0756 5.9132 29 1 5.1714 -0.3726 3.5178 30 1 7.0798 -1.9573 3.3547 31 1 7.3957 -3.2518 1.2834 32 1 4.0478 -1.5079 -0.4417 33 1 1.2759 -0.5403 2.0358 34 1 2.2090 -1.6883 1.0374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 35.031970 kcal Electronic energy + Delta-G solvation = -16959.048422 eV Core-core repulsion = 14470.425273 eV Total energy + Delta-G solvation = -2488.623149 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52539 -39.50755 -35.67306 -33.80991 -32.94177 -31.29999 -29.65519 -27.55034 -25.85215 -24.05817 -23.72366 -22.08939 -20.88145 -19.00117 -17.86114 -17.15621 -16.71037 -16.31628 -16.03439 -15.36060 -15.07270 -14.92998 -14.71844 -14.37923 -13.98214 -13.71772 -13.19076 -13.03827 -12.72485 -12.63412 -12.42694 -12.22067 -11.86951 -11.69857 -11.46006 -11.25813 -10.79611 -10.28239 -10.16656 -9.62395 -9.36000 -8.40678 -6.37467 0.28748 0.44994 1.25254 1.36179 1.38984 2.26428 2.90252 2.98019 3.24818 3.66972 3.97056 4.03471 4.13626 4.17111 4.32575 4.33831 4.49745 4.56686 4.57729 4.72916 4.77257 4.84351 4.91669 4.98684 5.07162 5.15461 5.22842 5.37244 5.38022 5.57054 5.74729 5.92923 5.95502 6.16386 6.29077 6.68571 7.11147 7.25853 8.73752 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.014989 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.793761 B = 1867.553665 C = 2599.964267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.524 5.524 3 C 0.045 3.955 4 C -0.096 4.096 5 C 0.070 3.930 6 C -0.507 4.507 7 H 0.042 0.958 8 C 0.045 3.955 9 N -0.928 5.928 10 Si 0.889 3.111 11 H -0.249 1.249 12 H -0.312 1.312 13 H -0.235 1.235 14 C -0.114 4.114 15 C -0.088 4.088 16 C -0.180 4.180 17 C 0.076 3.924 18 N -0.503 5.503 19 C 0.088 3.912 20 C 0.052 3.948 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.014 0.986 24 H 0.102 0.898 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.022 0.978 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -3.633 -8.806 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.083 4.083 4 C -0.134 4.134 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.060 0.940 8 C -0.155 4.155 9 N -0.567 5.567 10 Si 0.716 3.284 11 H -0.174 1.174 12 H -0.241 1.241 13 H -0.159 1.159 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.200 4.200 17 C -0.080 4.080 18 N -0.212 5.212 19 C -0.068 4.068 20 C -0.076 4.076 21 H 0.108 0.892 22 H 0.088 0.912 23 H 0.033 0.967 24 H 0.120 0.880 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.170 0.830 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.041 0.959 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.185 -4.433 -9.863 11.273 hybrid contribution -0.693 0.372 2.483 2.605 sum 2.492 -4.061 -7.380 8.784 Atomic orbital electron populations 1.22550 0.87570 1.02235 1.00960 1.64835 1.08707 1.15305 1.35912 1.23159 0.94734 0.89544 1.00863 1.22494 0.96548 0.97785 0.96597 1.18304 0.88664 0.91477 0.94798 1.20958 1.47211 0.95077 0.91195 0.93958 1.25546 0.93371 1.01533 0.95049 1.70099 1.43197 1.37649 1.05713 0.87017 0.78852 0.82989 0.79505 1.17369 1.24068 1.15928 1.21373 0.98017 0.98039 0.94196 1.21875 0.93755 0.96709 0.99047 1.22451 0.99048 0.97833 1.00661 1.23163 0.98159 0.98135 0.88576 1.67682 1.04393 1.18377 1.30767 1.22753 0.94688 0.92023 0.97354 1.23411 0.96281 0.97818 0.90120 0.89168 0.91191 0.96734 0.88027 0.95061 0.90784 0.92098 0.92549 0.85588 0.83026 0.79718 0.82194 0.95911 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.41 127.69 1.20 1.67 16 2 N -0.52 -18.49 5.56 -909.17 -5.05 -23.54 16 3 C 0.04 1.51 6.55 86.65 0.57 2.07 16 4 C -0.10 -3.60 6.09 31.87 0.19 -3.41 16 5 C 0.07 3.02 0.48 -52.73 -0.03 3.00 16 6 C -0.51 -26.71 7.32 25.60 0.19 -26.52 16 7 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 8 C 0.04 2.45 4.39 84.65 0.37 2.82 16 9 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 10 Si 0.89 42.30 22.39 68.60 1.54 43.83 16 11 H -0.25 -11.13 5.87 99.48 0.58 -10.55 16 12 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 13 H -0.24 -10.71 4.31 99.48 0.43 -10.28 16 14 C -0.11 -4.67 2.98 -19.77 -0.06 -4.73 16 15 C -0.09 -3.62 5.59 22.47 0.13 -3.50 16 16 C -0.18 -6.06 9.78 22.36 0.22 -5.84 16 17 C 0.08 2.36 11.18 84.69 0.95 3.31 16 18 N -0.50 -17.85 10.36 -195.84 -2.03 -19.88 16 19 C 0.09 3.29 9.27 84.67 0.78 4.08 16 20 C 0.05 2.17 3.83 86.45 0.33 2.50 16 21 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 24 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 26 H 0.07 2.51 7.35 -2.39 -0.02 2.49 16 27 H 0.06 2.36 7.64 -2.39 -0.02 2.34 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.13 5.82 5.46 -2.92 -0.02 5.81 16 30 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.19 4.12 8.06 -2.91 -0.02 4.09 16 32 H 0.16 5.61 7.89 -2.91 -0.02 5.59 16 33 H 0.02 1.07 6.22 -2.39 -0.01 1.06 16 34 H 0.06 2.64 5.58 -2.38 -0.01 2.63 16 Total: -1.00 -61.61 259.12 0.28 -61.33 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.68 Total: 17.74 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.84 Total: -24.55 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -6.78 Total: -98.35 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.54 Total: 43.83 kcal Total: -61.61 0.28 -61.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.361 kcal (2) G-P(sol) polarization free energy of solvation -61.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds