Wall clock time and date at job start Mon Mar 30 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48564 * 111.00314 * 2 1 4 4 C 1.54379 * 104.59753 * 159.03498 * 3 2 1 5 5 C 1.54251 * 105.06060 * 336.15054 * 4 3 2 6 6 C 1.50706 * 110.32580 * 118.89360 * 5 4 3 7 7 H 1.07995 * 120.00179 * 237.42163 * 6 5 4 8 8 C 1.37874 * 119.99485 * 57.41795 * 6 5 4 9 9 N 1.31509 * 120.00376 * 6.32954 * 8 6 5 10 10 Si 1.86803 * 119.99621 * 186.32962 * 8 6 5 11 11 H 1.48498 * 109.47286 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47370 * 120.00126 * 10 8 6 13 13 H 1.48509 * 109.46873 * 240.00271 * 10 8 6 14 14 C 1.50702 * 110.32559 * 240.99986 * 5 4 3 15 15 C 1.38226 * 119.62145 * 165.38459 * 14 5 4 16 16 C 1.38622 * 119.16191 * 179.97438 * 15 14 5 17 17 C 1.38673 * 118.42145 * 359.97438 * 16 15 14 18 18 C 1.38178 * 119.16364 * 0.02562 * 17 16 15 19 19 N 1.31852 * 119.61404 * 345.10966 * 14 5 4 20 20 C 1.48563 * 111.00000 * 115.41844 * 2 1 3 21 21 H 1.09009 * 109.46775 * 59.87420 * 1 2 3 22 22 H 1.08996 * 109.47463 * 179.87300 * 1 2 3 23 23 H 1.08997 * 109.47511 * 299.87783 * 1 2 3 24 24 H 1.09010 * 110.40740 * 40.25631 * 3 2 1 25 25 H 1.09000 * 110.41141 * 277.82016 * 3 2 1 26 26 H 1.09007 * 110.31968 * 95.04594 * 4 3 2 27 27 H 1.09004 * 110.32400 * 217.25091 * 4 3 2 28 28 H 0.97005 * 120.00101 * 179.97438 * 9 8 6 29 29 H 1.08002 * 120.41825 * 359.97438 * 15 14 5 30 30 H 1.08001 * 120.79002 * 180.02562 * 16 15 14 31 31 H 1.08003 * 120.41914 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.62052 * 179.97438 * 18 17 16 33 33 H 1.08991 * 110.41295 * 82.17828 * 20 2 1 34 34 H 1.08999 * 110.41028 * 319.73879 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 0.5345 5 6 3.4432 -0.0538 1.3586 6 6 4.4180 -1.0430 0.7733 7 1 4.0760 -2.0193 0.4633 8 6 5.7464 -0.7013 0.6335 9 7 6.1878 0.4367 1.1231 10 14 6.9193 -1.8549 -0.2514 11 1 6.1802 -3.0606 -0.7042 12 1 7.5032 -1.1610 -1.4271 13 1 8.0072 -2.2606 0.6746 14 6 3.7918 0.2353 2.7959 15 6 3.5563 -0.7245 3.7624 16 6 3.8810 -0.4487 5.0815 17 6 4.4335 0.7875 5.3806 18 6 4.6400 1.6972 4.3612 19 7 4.3229 1.3988 3.1163 20 6 2.0014 -0.5953 1.2527 21 1 -0.3633 0.5158 -0.8889 22 1 -0.3634 -1.0276 -0.0023 23 1 -0.3634 0.5119 0.8910 24 1 1.4098 2.0212 0.6602 25 1 2.0079 1.7916 -1.0121 26 1 4.1483 1.1748 -0.2934 27 1 3.6936 2.0996 1.1700 28 1 7.1225 0.6769 1.0250 29 1 3.1247 -1.6773 3.4932 30 1 3.7087 -1.1796 5.8577 31 1 4.6990 1.0362 6.3975 32 1 5.0694 2.6623 4.5859 33 1 2.0078 -1.6830 1.1839 34 1 1.4098 -0.2713 2.1089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261121834.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:17 Heat of formation + Delta-G solvation = 30.523654 kcal Electronic energy + Delta-G solvation = -16750.305512 eV Core-core repulsion = 14261.486868 eV Total energy + Delta-G solvation = -2488.818645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05118 -39.19385 -35.32907 -33.13434 -32.82431 -31.08030 -29.49134 -27.16955 -25.63710 -24.05067 -23.61147 -21.64429 -20.81044 -18.58993 -17.38637 -16.63607 -16.58656 -16.19478 -16.01676 -15.43771 -15.07347 -14.68618 -14.05620 -13.90615 -13.61874 -13.45575 -13.26108 -12.92465 -12.64864 -12.42206 -12.27418 -12.11768 -11.88324 -11.49238 -11.17807 -10.86075 -10.49407 -10.38729 -9.73730 -9.44226 -9.21410 -7.96095 -6.10135 0.63339 0.81973 1.39440 1.43881 1.52996 2.46927 3.18350 3.32625 3.41251 3.90394 4.19825 4.24502 4.27926 4.29249 4.48280 4.53704 4.60203 4.65006 4.72581 4.76117 4.95251 5.01552 5.06002 5.12718 5.30108 5.35596 5.52291 5.57512 5.65665 5.79594 6.03060 6.07834 6.28832 6.36268 6.46168 6.91566 7.53006 7.71580 9.02480 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.015130 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.852456 B = 1850.181842 C = 2987.432578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.037 3.963 4 C -0.083 4.083 5 C 0.102 3.898 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.025 3.975 9 N -0.876 5.876 10 Si 0.938 3.062 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.195 4.195 16 C -0.087 4.087 17 C -0.202 4.202 18 C 0.070 3.930 19 N -0.481 5.481 20 C 0.061 3.939 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.251 0.749 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 0.211 5.400 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.249 5.249 3 C -0.091 4.091 4 C -0.122 4.122 5 C 0.101 3.899 6 C -0.547 4.547 7 H 0.072 0.928 8 C -0.177 4.177 9 N -0.512 5.512 10 Si 0.765 3.235 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.216 1.216 14 C 0.039 3.961 15 C -0.215 4.215 16 C -0.113 4.113 17 C -0.222 4.222 18 C -0.087 4.087 19 N -0.189 5.189 20 C -0.067 4.067 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.144 0.856 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.089 0.911 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.917 0.642 4.276 8.158 hybrid contribution 0.772 -0.666 0.763 1.274 sum -6.145 -0.024 5.039 7.947 Atomic orbital electron populations 1.22560 0.87298 1.02520 1.00928 1.65263 1.08635 1.15505 1.35506 1.23150 0.96152 0.89663 1.00165 1.22041 0.93195 0.98511 0.98434 1.17865 0.91433 0.93654 0.86971 1.21125 0.92749 0.99976 1.40860 0.92818 1.25592 0.99564 0.96482 0.96072 1.70274 1.14458 1.22706 1.43798 0.85814 0.79282 0.79887 0.78487 1.19198 1.21186 1.21586 1.21732 0.89485 0.88155 0.96704 1.21994 1.04544 1.00636 0.94363 1.21767 0.96026 0.97281 0.96184 1.22205 1.03485 0.95177 1.01347 1.23119 0.96840 1.00143 0.88597 1.67457 1.09675 1.21810 1.19991 1.23068 0.94746 0.99332 0.89583 0.90380 0.90639 0.95618 0.94546 0.90624 0.94835 0.92399 0.93972 0.85634 0.82779 0.82711 0.82636 0.91089 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.53 127.69 1.22 1.67 16 2 N -0.53 -20.52 5.66 -907.62 -5.14 -25.65 16 3 C 0.04 1.46 6.49 86.45 0.56 2.02 16 4 C -0.08 -4.05 5.28 31.49 0.17 -3.89 16 5 C 0.10 4.97 0.51 -52.78 -0.03 4.94 16 6 C -0.51 -27.37 7.80 25.60 0.20 -27.17 16 7 H 0.05 2.91 7.53 -2.91 -0.02 2.88 16 8 C 0.02 1.37 4.85 84.65 0.41 1.78 16 9 N -0.88 -50.11 10.98 21.45 0.24 -49.87 16 10 Si 0.94 44.30 29.54 68.60 2.03 46.33 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 14 C 0.18 8.36 4.63 42.55 0.20 8.56 16 15 C -0.20 -8.01 9.04 22.36 0.20 -7.81 16 16 C -0.09 -2.94 10.18 22.47 0.23 -2.71 16 17 C -0.20 -6.64 10.11 22.36 0.23 -6.42 16 18 C 0.07 2.75 11.18 84.67 0.95 3.69 16 19 N -0.48 -22.79 7.69 -183.89 -1.41 -24.21 16 20 C 0.06 2.54 4.88 86.45 0.42 2.96 16 21 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.03 0.72 7.97 -2.39 -0.02 0.70 16 24 H 0.04 1.36 7.97 -2.38 -0.02 1.34 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.03 1.82 7.10 -2.38 -0.02 1.80 16 27 H 0.06 2.97 6.39 -2.39 -0.02 2.95 16 28 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.13 4.85 7.79 -2.91 -0.02 4.83 16 30 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 31 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.16 5.15 8.06 -2.91 -0.02 5.13 16 33 H 0.07 2.94 7.66 -2.39 -0.02 2.92 16 34 H 0.03 1.12 7.47 -2.39 -0.02 1.11 16 Total: -1.00 -63.21 276.45 1.53 -61.68 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.07 Total: 14.09 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.75 Total: -22.37 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -6.32 Total: -99.73 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.21 1.53 -61.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121834.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.206 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds