Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48533 * 110.99821 * 2 1 4 4 C 1.54940 * 103.22796 * 200.28008 * 3 2 1 5 5 C 1.54601 * 102.92013 * 37.40848 * 4 3 2 6 6 C 1.50695 * 110.31015 * 219.13132 * 5 4 3 7 7 H 1.08006 * 120.00291 * 354.00995 * 6 5 4 8 8 C 1.37879 * 120.00375 * 174.29195 * 6 5 4 9 9 N 1.31517 * 119.99714 * 5.94606 * 8 6 5 10 10 Si 1.86799 * 120.00449 * 185.94546 * 8 6 5 11 11 H 1.48506 * 109.46911 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47084 * 119.99489 * 10 8 6 13 13 H 1.48495 * 109.47434 * 239.99946 * 10 8 6 14 14 C 1.50696 * 110.39144 * 97.00536 * 5 4 3 15 15 C 1.38229 * 119.62082 * 76.75139 * 14 5 4 16 16 C 1.38628 * 119.16470 * 179.71278 * 15 14 5 17 17 C 1.38669 * 118.41662 * 0.54709 * 16 15 14 18 18 C 1.38183 * 119.16764 * 359.73624 * 17 16 15 19 19 N 1.31860 * 119.61976 * 257.02547 * 14 5 4 20 20 C 1.47899 * 110.99998 * 242.60265 * 2 1 3 21 21 H 1.09005 * 109.46897 * 177.40311 * 1 2 3 22 22 H 1.09000 * 109.47169 * 297.39501 * 1 2 3 23 23 H 1.08997 * 109.47294 * 57.40392 * 1 2 3 24 24 H 1.09002 * 110.66213 * 318.71065 * 3 2 1 25 25 H 1.08991 * 110.66961 * 81.67441 * 3 2 1 26 26 H 1.09004 * 110.72198 * 279.05724 * 4 3 2 27 27 H 1.08991 * 110.73027 * 155.76843 * 4 3 2 28 28 H 0.96997 * 119.99593 * 180.02562 * 9 8 6 29 29 H 1.08004 * 120.41785 * 359.97438 * 15 14 5 30 30 H 1.08001 * 120.79076 * 180.25548 * 16 15 14 31 31 H 1.08006 * 120.42061 * 179.71092 * 17 16 15 32 32 H 1.07995 * 119.62071 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.92072 * 26.48776 * 20 2 1 34 34 H 1.09007 * 110.08211 * 265.28497 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2983 0.1053 -1.5930 6 6 4.4716 -0.8387 -1.5390 7 1 5.3048 -0.6278 -0.8849 8 6 4.4843 -1.9688 -2.3288 9 7 3.5306 -2.1636 -3.2132 10 14 5.8559 -3.2232 -2.1426 11 1 6.7978 -2.7737 -1.0862 12 1 5.2770 -4.5368 -1.7625 13 1 6.5829 -3.3566 -3.4305 14 6 3.1821 0.7159 -2.9658 15 6 4.3131 1.1999 -3.5962 16 6 4.1963 1.7542 -4.8614 17 6 2.9389 1.8117 -5.4432 18 6 1.8526 1.3131 -4.7499 19 7 2.0020 0.7872 -3.5496 20 6 1.9990 -0.6354 -1.2259 21 1 -0.3633 -1.0267 -0.0466 22 1 -0.3633 0.4728 0.9124 23 1 -0.3634 0.5536 -0.8658 24 1 1.4236 2.0204 -0.6730 25 1 2.0013 1.7988 1.0090 26 1 4.1115 0.8837 0.2787 27 1 3.8123 2.1351 -0.9717 28 1 3.5394 -2.9588 -3.7686 29 1 5.2763 1.1431 -3.1109 30 1 5.0633 2.1366 -5.3797 31 1 2.8100 2.2412 -6.4258 32 1 0.8699 1.3545 -5.1959 33 1 1.2758 -0.5404 -2.0359 34 1 2.2117 -1.6882 -1.0398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = 45.031390 kcal Electronic energy + Delta-G solvation = -16844.129151 eV Core-core repulsion = 14355.939609 eV Total energy + Delta-G solvation = -2488.189542 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49101 -37.48719 -33.51480 -31.55557 -31.25718 -29.46059 -27.57592 -25.53993 -23.86888 -22.41857 -22.17338 -20.02865 -19.03249 -16.71642 -15.73021 -15.12831 -14.87092 -14.68674 -14.22593 -13.83282 -13.22233 -12.87669 -12.56649 -12.36565 -12.24151 -11.81569 -11.24727 -11.13537 -10.98026 -10.75247 -10.57473 -10.45078 -10.27401 -9.86024 -9.46437 -9.05392 -8.85206 -8.63716 -8.23671 -7.77051 -7.39972 -6.06995 -4.14673 2.20169 2.28997 3.26961 3.36214 3.39288 4.37991 4.86618 5.02329 5.16514 5.45519 5.57372 5.73951 5.77082 5.87628 5.98978 6.00842 6.21127 6.22536 6.25923 6.41558 6.45670 6.62506 6.69671 6.80470 6.95345 7.01711 7.08159 7.20856 7.38045 7.63116 7.79606 7.86542 7.99859 8.12648 8.32205 8.86157 9.17909 9.50284 10.97940 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.014527 C = 0.009651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.524921 B = 1927.043631 C = 2900.506222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.528 5.528 3 C 0.037 3.963 4 C -0.107 4.107 5 C 0.106 3.894 6 C -0.509 4.509 7 H 0.065 0.935 8 C 0.070 3.930 9 N -0.869 5.869 10 Si 0.890 3.110 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.286 1.286 14 C 0.216 3.784 15 C -0.152 4.152 16 C -0.091 4.091 17 C -0.212 4.212 18 C 0.089 3.911 19 N -0.485 5.485 20 C 0.067 3.933 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.261 0.739 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.057 0.943 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 6.562 -0.258 6.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.104 3.896 6 C -0.547 4.547 7 H 0.083 0.917 8 C -0.135 4.135 9 N -0.505 5.505 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.213 1.213 14 C 0.078 3.922 15 C -0.172 4.172 16 C -0.117 4.117 17 C -0.232 4.232 18 C -0.068 4.068 19 N -0.194 5.194 20 C -0.060 4.060 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.394 5.806 0.482 6.299 hybrid contribution 1.137 -0.141 -1.533 1.914 sum -1.257 5.665 -1.051 5.897 Atomic orbital electron populations 1.22391 0.90038 1.00975 0.99302 1.64839 1.06263 1.13832 1.40299 1.23129 0.96297 0.90786 0.98919 1.22571 0.95151 0.97910 0.98884 1.17967 0.95242 0.91208 0.85210 1.20985 1.03519 1.05788 1.24451 0.91701 1.25002 0.95890 0.97976 0.94613 1.70010 1.32470 1.27118 1.20876 0.86562 0.82175 0.81654 0.77848 1.19568 1.20899 1.21274 1.21766 0.86579 0.86942 0.96890 1.21823 1.00705 0.99481 0.95193 1.21374 0.96826 0.98035 0.95453 1.21733 0.94446 1.05997 1.01038 1.22476 0.97833 0.94763 0.91724 1.67478 1.27625 1.14102 1.10150 1.22955 0.96010 0.98932 0.88123 0.92252 0.92932 0.95978 0.95041 0.91890 0.90824 0.93126 0.92948 0.85450 0.86684 0.86851 0.84836 0.92519 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.40 60.06 0.56 0.97 16 2 N -0.53 -11.22 5.55 -238.72 -1.33 -12.55 16 3 C 0.04 0.72 6.56 -1.90 -0.01 0.71 16 4 C -0.11 -2.22 6.12 -24.87 -0.15 -2.37 16 5 C 0.11 2.52 0.47 -155.46 -0.07 2.45 16 6 C -0.51 -13.11 6.88 -34.44 -0.24 -13.35 16 7 H 0.06 1.65 7.61 -52.48 -0.40 1.25 16 8 C 0.07 1.83 4.84 -17.82 -0.09 1.74 16 9 N -0.87 -23.92 11.51 55.43 0.64 -23.28 16 10 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.22 5.08 4.40 -82.59 -0.36 4.71 16 15 C -0.15 -3.30 9.11 -39.44 -0.36 -3.66 16 16 C -0.09 -1.72 10.18 -39.28 -0.40 -2.12 16 17 C -0.21 -3.83 10.11 -39.44 -0.40 -4.23 16 18 C 0.09 1.76 11.18 -17.55 -0.20 1.57 16 19 N -0.48 -11.18 8.33 -9.47 -0.08 -11.26 16 20 C 0.07 1.62 5.09 -2.76 -0.01 1.61 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 24 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.52 7.72 -51.93 -0.40 1.12 16 27 H 0.05 0.98 7.77 -51.93 -0.40 0.58 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 29 H 0.13 2.71 7.62 -52.48 -0.40 2.31 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.06 1.45 5.89 -51.93 -0.31 1.15 16 34 H 0.08 2.06 7.05 -51.93 -0.37 1.69 16 LS Contribution 277.12 15.07 4.18 4.18 Total: -1.00 -28.40 277.12 -8.12 -36.51 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.78 Total: 2.71 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.73 Total: -11.98 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.77 Total: -47.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.40 -8.12 -36.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.542 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds