Wall clock time and date at job start Mon Mar 30 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48802 * 111.18584 * 2 1 4 4 C 1.54945 * 103.34835 * 159.50494 * 3 2 1 5 5 C 1.54590 * 102.92064 * 322.69407 * 4 3 2 6 6 C 1.50703 * 110.31221 * 140.87234 * 5 4 3 7 7 H 1.07995 * 119.99759 * 8.90389 * 6 5 4 8 8 C 1.37876 * 119.99870 * 188.90542 * 6 5 4 9 9 N 1.31515 * 120.00294 * 1.72356 * 8 6 5 10 10 Si 1.86806 * 119.99625 * 181.73175 * 8 6 5 11 11 H 1.48501 * 109.47056 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47176 * 120.00003 * 10 8 6 13 13 H 1.48505 * 109.46733 * 239.99825 * 10 8 6 14 14 C 1.50703 * 110.30577 * 263.04031 * 5 4 3 15 15 C 1.38651 * 120.79179 * 62.67012 * 14 5 4 16 16 C 1.38206 * 119.15901 * 179.75391 * 15 14 5 17 17 N 1.31864 * 120.76775 * 0.53649 * 16 15 14 18 18 C 1.31874 * 121.72477 * 359.73784 * 17 16 15 19 19 C 1.38198 * 120.76456 * 359.97438 * 18 17 16 20 20 C 1.47900 * 110.99682 * 117.34035 * 2 1 3 21 21 H 1.09004 * 109.47482 * 302.66464 * 1 2 3 22 22 H 1.09000 * 109.47288 * 62.65821 * 1 2 3 23 23 H 1.08995 * 109.47657 * 182.66146 * 1 2 3 24 24 H 1.08992 * 110.52491 * 41.07817 * 3 2 1 25 25 H 1.09003 * 110.70413 * 278.01891 * 3 2 1 26 26 H 1.09000 * 110.72659 * 204.32978 * 4 3 2 27 27 H 1.09003 * 110.71995 * 81.04919 * 4 3 2 28 28 H 0.96998 * 119.99917 * 180.02562 * 9 8 6 29 29 H 1.08001 * 120.41768 * 0.02562 * 15 14 5 30 30 H 1.08005 * 119.61344 * 180.24707 * 16 15 14 31 31 H 1.07997 * 119.61661 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.42294 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.92047 * 94.80394 * 20 2 1 34 34 H 1.08999 * 109.91870 * 333.70112 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3874 0.0000 4 6 3.4527 1.2106 0.5278 5 6 3.2974 0.1058 1.5979 6 6 4.4704 -0.8391 1.5483 7 1 5.3265 -0.6052 0.9329 8 6 4.4505 -2.0021 2.2886 9 7 3.3941 -2.3035 3.0115 10 14 5.9245 -3.1495 2.2649 11 1 6.9757 -2.5867 1.3799 12 1 6.4613 -3.2943 3.6419 13 1 5.5077 -4.4800 1.7536 14 6 3.1760 0.7191 2.9691 15 6 2.1096 1.5472 3.2844 16 6 2.0290 2.0875 4.5539 17 7 2.9562 1.8318 5.4560 18 6 3.9869 1.0535 5.1896 19 6 4.1312 0.4732 3.9437 20 6 1.9989 -0.6342 1.2266 21 1 -0.3634 0.5547 0.8651 22 1 -0.3634 0.4720 -0.9128 23 1 -0.3634 -1.0265 0.0477 24 1 1.4274 2.0218 0.6707 25 1 2.0134 1.7982 -1.0097 26 1 3.8149 2.1351 0.9776 27 1 4.1176 0.8829 -0.2713 28 1 3.3803 -3.1215 3.5326 29 1 1.3493 1.7638 2.5485 30 1 1.1993 2.7304 4.8086 31 1 4.7263 0.8667 5.9543 32 1 4.9772 -0.1637 3.7317 33 1 2.2121 -1.6864 1.0382 34 1 1.2743 -0.5413 2.0355 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:24 Heat of formation + Delta-G solvation = 42.596032 kcal Electronic energy + Delta-G solvation = -16862.265278 eV Core-core repulsion = 14373.970131 eV Total energy + Delta-G solvation = -2488.295147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63213 -37.75628 -33.93383 -31.77861 -30.18339 -30.03887 -27.79229 -25.70026 -24.10928 -22.35982 -22.13940 -20.28142 -19.12008 -16.83372 -15.72618 -15.28878 -14.78166 -14.59210 -14.27567 -14.04126 -13.47456 -12.92626 -12.80018 -12.66098 -12.27970 -11.81210 -11.45671 -11.20053 -11.01602 -10.79540 -10.64246 -10.54022 -10.41260 -10.01069 -9.65266 -9.11034 -8.64088 -8.51807 -8.34713 -8.08048 -7.59338 -6.17356 -4.24432 2.08198 2.37128 3.20730 3.31160 3.34055 4.29887 4.76589 4.85324 5.09309 5.22830 5.58417 5.64255 5.72082 5.82318 5.89460 5.96180 6.05492 6.17151 6.25953 6.29648 6.35495 6.51186 6.61509 6.72937 6.82740 6.87095 6.95218 7.23712 7.50648 7.64237 7.67441 7.76806 7.83831 7.94509 8.27728 8.78076 8.81942 9.40079 10.88208 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.014420 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.061589 B = 1941.282775 C = 3001.027941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.529 5.529 3 C 0.031 3.969 4 C -0.106 4.106 5 C 0.093 3.907 6 C -0.508 4.508 7 H 0.064 0.936 8 C 0.067 3.933 9 N -0.876 5.876 10 Si 0.887 3.113 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.026 3.974 15 C -0.192 4.192 16 C 0.073 3.927 17 N -0.509 5.509 18 C 0.068 3.932 19 C -0.117 4.117 20 C 0.077 3.923 21 H 0.018 0.982 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.263 0.737 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 5.092 -1.827 5.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.096 4.096 4 C -0.144 4.144 5 C 0.092 3.908 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.512 5.512 10 Si 0.715 3.285 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.017 3.983 15 C -0.212 4.212 16 C -0.084 4.084 17 N -0.219 5.219 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.050 4.050 21 H 0.036 0.964 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.307 5.007 -1.328 5.671 hybrid contribution 0.290 -0.772 0.051 0.826 sum -2.017 4.236 -1.277 4.862 Atomic orbital electron populations 1.22424 0.89847 1.01218 0.99402 1.64937 1.06249 1.14101 1.39995 1.23318 0.96472 0.90529 0.99330 1.22568 0.94899 0.98103 0.98853 1.18044 0.95013 0.91444 0.86316 1.21011 1.02012 1.04125 1.27497 0.91799 1.24974 0.96045 0.97500 0.95108 1.69997 1.27802 1.24853 1.28559 0.86591 0.82989 0.81005 0.77927 1.19569 1.20880 1.20892 1.20832 0.90470 0.89296 0.97655 1.22000 1.00196 1.01263 0.97772 1.22334 0.97062 0.98920 0.90090 1.67470 1.03125 1.15967 1.35380 1.22595 0.95430 0.94656 0.96101 1.22230 1.00943 0.97946 0.92587 1.22946 0.94406 1.00565 0.87109 0.96365 0.92516 0.91961 0.94842 0.91581 0.92890 0.90883 0.92721 0.86889 0.84657 0.84432 0.84086 0.88926 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.41 60.06 0.57 0.90 16 2 N -0.53 -10.44 5.56 -238.48 -1.33 -11.76 16 3 C 0.03 0.56 6.22 -1.74 -0.01 0.55 16 4 C -0.11 -2.10 5.95 -24.87 -0.15 -2.25 16 5 C 0.09 2.10 0.51 -155.45 -0.08 2.02 16 6 C -0.51 -12.54 6.70 -34.44 -0.23 -12.77 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.07 1.67 3.51 -17.82 -0.06 1.61 16 9 N -0.88 -22.70 10.73 55.43 0.59 -22.11 16 10 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.03 0.58 4.15 -104.31 -0.43 0.15 16 15 C -0.19 -3.88 8.52 -39.44 -0.34 -4.21 16 16 C 0.07 1.41 11.18 -17.55 -0.20 1.21 16 17 N -0.51 -10.49 10.36 -13.25 -0.14 -10.63 16 18 C 0.07 1.39 11.18 -17.55 -0.20 1.19 16 19 C -0.12 -2.62 8.37 -39.44 -0.33 -2.95 16 20 C 0.08 1.74 4.70 -2.75 -0.01 1.73 16 21 H 0.02 0.29 8.01 -51.93 -0.42 -0.12 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.03 0.57 6.23 -51.93 -0.32 0.25 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 27 H 0.07 1.47 7.74 -51.93 -0.40 1.06 16 28 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.11 2.12 5.96 -52.49 -0.31 1.81 16 30 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.14 3.29 5.86 -52.49 -0.31 2.98 16 33 H 0.09 2.40 6.62 -51.93 -0.34 2.06 16 34 H 0.02 0.59 6.69 -51.93 -0.35 0.24 16 LS Contribution 269.36 15.07 4.06 4.06 Total: -1.00 -26.50 269.36 -7.81 -34.31 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.51 Total: 4.22 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.47 Total: -12.82 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.87 Total: -44.50 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.50 -7.81 -34.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.908 kcal (2) G-P(sol) polarization free energy of solvation -26.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds