Wall clock time and date at job start Mon Mar 30 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48802 * 111.18584 * 2 1 4 4 C 1.54945 * 103.34835 * 159.50494 * 3 2 1 5 5 C 1.54590 * 102.92064 * 322.69407 * 4 3 2 6 6 C 1.50703 * 110.31221 * 140.87234 * 5 4 3 7 7 H 1.07995 * 119.99759 * 8.90389 * 6 5 4 8 8 C 1.37876 * 119.99870 * 188.90542 * 6 5 4 9 9 N 1.31515 * 120.00294 * 1.72356 * 8 6 5 10 10 Si 1.86806 * 119.99625 * 181.73175 * 8 6 5 11 11 H 1.48501 * 109.47056 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47176 * 120.00003 * 10 8 6 13 13 H 1.48505 * 109.46733 * 239.99825 * 10 8 6 14 14 C 1.50703 * 110.30577 * 263.04031 * 5 4 3 15 15 C 1.38651 * 120.79179 * 62.67012 * 14 5 4 16 16 C 1.38206 * 119.15901 * 179.75391 * 15 14 5 17 17 N 1.31864 * 120.76775 * 0.53649 * 16 15 14 18 18 C 1.31874 * 121.72477 * 359.73784 * 17 16 15 19 19 C 1.38198 * 120.76456 * 359.97438 * 18 17 16 20 20 C 1.47900 * 110.99682 * 117.34035 * 2 1 3 21 21 H 1.09004 * 109.47482 * 302.66464 * 1 2 3 22 22 H 1.09000 * 109.47288 * 62.65821 * 1 2 3 23 23 H 1.08995 * 109.47657 * 182.66146 * 1 2 3 24 24 H 1.08992 * 110.52491 * 41.07817 * 3 2 1 25 25 H 1.09003 * 110.70413 * 278.01891 * 3 2 1 26 26 H 1.09000 * 110.72659 * 204.32978 * 4 3 2 27 27 H 1.09003 * 110.71995 * 81.04919 * 4 3 2 28 28 H 0.96998 * 119.99917 * 180.02562 * 9 8 6 29 29 H 1.08001 * 120.41768 * 0.02562 * 15 14 5 30 30 H 1.08005 * 119.61344 * 180.24707 * 16 15 14 31 31 H 1.07997 * 119.61661 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.42294 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.92047 * 94.80394 * 20 2 1 34 34 H 1.08999 * 109.91870 * 333.70112 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3874 0.0000 4 6 3.4527 1.2106 0.5278 5 6 3.2974 0.1058 1.5979 6 6 4.4704 -0.8391 1.5483 7 1 5.3265 -0.6052 0.9329 8 6 4.4505 -2.0021 2.2886 9 7 3.3941 -2.3035 3.0115 10 14 5.9245 -3.1495 2.2649 11 1 6.9757 -2.5867 1.3799 12 1 6.4613 -3.2943 3.6419 13 1 5.5077 -4.4800 1.7536 14 6 3.1760 0.7191 2.9691 15 6 2.1096 1.5472 3.2844 16 6 2.0290 2.0875 4.5539 17 7 2.9562 1.8318 5.4560 18 6 3.9869 1.0535 5.1896 19 6 4.1312 0.4732 3.9437 20 6 1.9989 -0.6342 1.2266 21 1 -0.3634 0.5547 0.8651 22 1 -0.3634 0.4720 -0.9128 23 1 -0.3634 -1.0265 0.0477 24 1 1.4274 2.0218 0.6707 25 1 2.0134 1.7982 -1.0097 26 1 3.8149 2.1351 0.9776 27 1 4.1176 0.8829 -0.2713 28 1 3.3803 -3.1215 3.5326 29 1 1.3493 1.7638 2.5485 30 1 1.1993 2.7304 4.8086 31 1 4.7263 0.8667 5.9543 32 1 4.9772 -0.1637 3.7317 33 1 2.2121 -1.6864 1.0382 34 1 1.2743 -0.5413 2.0355 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:23 Heat of formation + Delta-G solvation = 26.116643 kcal Electronic energy + Delta-G solvation = -16862.979878 eV Core-core repulsion = 14373.970131 eV Total energy + Delta-G solvation = -2489.009747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.24695 -39.33759 -35.63348 -33.53480 -31.78549 -31.58940 -29.46705 -27.36927 -25.75944 -23.96943 -23.73358 -21.82356 -20.82058 -18.60085 -17.36831 -16.99520 -16.38324 -16.30089 -15.81391 -15.65256 -15.00708 -14.49953 -14.36219 -14.32527 -13.77991 -13.56008 -12.99844 -12.94649 -12.74498 -12.45950 -12.27729 -12.14727 -11.98387 -11.63616 -11.41700 -10.92119 -10.49367 -10.14984 -9.95995 -9.73463 -9.14616 -8.09302 -6.19856 0.48870 0.73873 1.40051 1.46362 1.53986 2.43745 3.16941 3.18970 3.34738 3.75217 4.06740 4.20270 4.21841 4.32011 4.39099 4.50046 4.63023 4.63969 4.71800 4.83260 4.87622 4.99359 5.02318 5.10509 5.21592 5.26648 5.31470 5.56519 5.71594 5.81518 5.98089 6.08772 6.22400 6.37423 6.43266 6.86996 7.23414 7.46689 8.95015 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.014420 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.061589 B = 1941.282775 C = 3001.027941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.039 3.961 4 C -0.104 4.104 5 C 0.083 3.917 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.036 3.964 9 N -0.896 5.896 10 Si 0.935 3.065 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.288 1.288 14 C 0.010 3.990 15 C -0.195 4.195 16 C 0.077 3.923 17 N -0.518 5.518 18 C 0.067 3.933 19 C -0.140 4.140 20 C 0.096 3.904 21 H 0.024 0.976 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.258 0.742 29 H 0.128 0.872 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 6.521 -2.048 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.088 4.088 4 C -0.142 4.142 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.165 4.165 9 N -0.534 5.534 10 Si 0.762 3.238 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.214 1.214 14 C 0.002 3.998 15 C -0.215 4.215 16 C -0.080 4.080 17 N -0.229 5.229 18 C -0.088 4.088 19 C -0.160 4.160 20 C -0.032 4.032 21 H 0.042 0.958 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.191 0.809 31 H 0.178 0.822 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -3.109 6.448 -1.560 7.327 hybrid contribution 0.517 -1.191 0.091 1.302 sum -2.592 5.257 -1.469 6.042 Atomic orbital electron populations 1.22489 0.87710 1.01553 1.01082 1.64849 1.08387 1.15334 1.38188 1.23335 0.94839 0.89641 1.01007 1.22519 0.96396 0.97444 0.97829 1.18096 0.94048 0.92018 0.87679 1.21226 1.02510 1.04815 1.27015 0.92800 1.25424 0.97594 0.98517 0.94950 1.70095 1.29037 1.24944 1.29297 0.85846 0.80912 0.79231 0.77779 1.19322 1.20696 1.21405 1.20877 0.91436 0.90118 0.97384 1.22137 0.99789 1.00835 0.98691 1.22934 0.97369 0.98293 0.89360 1.67582 1.03407 1.16129 1.35749 1.22901 0.95932 0.94011 0.95922 1.22169 1.01040 0.98981 0.93788 1.22525 0.94270 0.98680 0.87740 0.95779 0.89655 0.92357 0.93487 0.89033 0.92039 0.91766 0.93228 0.85373 0.80900 0.82184 0.85959 0.92966 0.97365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.41 127.69 1.20 1.82 16 2 N -0.54 -20.64 5.56 -908.41 -5.05 -25.69 16 3 C 0.04 1.29 6.22 86.60 0.54 1.83 16 4 C -0.10 -3.99 5.95 31.80 0.19 -3.80 16 5 C 0.08 3.73 0.51 -52.79 -0.03 3.71 16 6 C -0.52 -26.02 6.70 25.60 0.17 -25.85 16 7 H 0.05 2.74 7.63 -2.91 -0.02 2.72 16 8 C 0.04 1.84 3.51 84.65 0.30 2.14 16 9 N -0.90 -47.59 10.73 21.45 0.23 -47.35 16 10 Si 0.94 41.27 29.54 68.60 2.03 43.30 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 14 C 0.01 0.46 4.15 -19.66 -0.08 0.38 16 15 C -0.19 -7.48 8.52 22.36 0.19 -7.29 16 16 C 0.08 2.77 11.18 84.68 0.95 3.72 16 17 N -0.52 -20.30 10.36 -195.84 -2.03 -22.33 16 18 C 0.07 2.70 11.18 84.68 0.95 3.65 16 19 C -0.14 -6.25 8.37 22.36 0.19 -6.07 16 20 C 0.10 4.37 4.70 86.45 0.41 4.77 16 21 H 0.02 0.71 8.01 -2.38 -0.02 0.69 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.44 6.23 -2.39 -0.01 1.43 16 25 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 26 H 0.06 2.22 7.85 -2.39 -0.02 2.20 16 27 H 0.06 2.54 7.74 -2.39 -0.02 2.52 16 28 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.13 4.46 5.96 -2.91 -0.02 4.44 16 30 H 0.17 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.16 5.48 8.06 -2.91 -0.02 5.45 16 32 H 0.12 5.85 5.86 -2.91 -0.02 5.83 16 33 H 0.05 2.78 6.62 -2.39 -0.02 2.77 16 34 H 0.01 0.39 6.69 -2.39 -0.02 0.37 16 Total: -1.00 -56.54 269.36 1.23 -55.31 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.09 Total: 17.75 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.97 Total: -20.99 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -6.85 Total: -95.37 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -56.54 1.23 -55.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.429 kcal (2) G-P(sol) polarization free energy of solvation -56.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds