Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48560 * 111.00200 * 2 1 4 4 C 1.54378 * 104.59614 * 200.96490 * 3 2 1 5 5 C 1.54256 * 105.06354 * 23.84740 * 4 3 2 6 6 C 1.50697 * 110.32854 * 241.10981 * 5 4 3 7 7 H 1.07997 * 119.99970 * 125.44847 * 6 5 4 8 8 C 1.37878 * 119.99630 * 305.44914 * 6 5 4 9 9 N 1.31508 * 120.00035 * 356.00680 * 8 6 5 10 10 Si 1.86804 * 119.99882 * 176.01138 * 8 6 5 11 11 H 1.48500 * 109.47221 * 269.99783 * 10 8 6 12 12 H 1.48503 * 109.46788 * 29.99809 * 10 8 6 13 13 H 1.48498 * 109.46976 * 149.99601 * 10 8 6 14 14 C 1.50705 * 110.32300 * 118.99879 * 5 4 3 15 15 C 1.38650 * 120.79010 * 308.55422 * 14 5 4 16 16 C 1.38203 * 119.16083 * 179.75042 * 15 14 5 17 17 N 1.31870 * 120.76337 * 0.53981 * 16 15 14 18 18 C 1.31869 * 121.72622 * 359.73469 * 17 16 15 19 19 C 1.38211 * 120.76371 * 359.97438 * 18 17 16 20 20 C 1.48560 * 110.99848 * 244.58072 * 2 1 3 21 21 H 1.09001 * 109.47082 * 59.87153 * 1 2 3 22 22 H 1.08995 * 109.47281 * 179.87262 * 1 2 3 23 23 H 1.09003 * 109.47037 * 299.87525 * 1 2 3 24 24 H 1.09000 * 110.41150 * 82.17844 * 3 2 1 25 25 H 1.09009 * 110.40845 * 319.74037 * 3 2 1 26 26 H 1.09004 * 110.32103 * 264.95790 * 4 3 2 27 27 H 1.09001 * 110.32705 * 142.74923 * 4 3 2 28 28 H 0.97001 * 120.00362 * 353.47925 * 9 8 6 29 29 H 1.08007 * 120.41833 * 0.02562 * 15 14 5 30 30 H 1.07996 * 119.61857 * 180.24519 * 16 15 14 31 31 H 1.07998 * 119.61894 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.41659 * 179.97438 * 19 18 17 33 33 H 1.09000 * 110.41283 * 40.26411 * 20 2 1 34 34 H 1.09000 * 110.41283 * 277.82191 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4433 -0.0539 -1.3585 6 6 4.4180 -1.0430 -0.7733 7 1 4.0857 -2.0353 -0.5063 8 6 5.7341 -0.6811 -0.5786 9 7 6.1571 0.4991 -0.9755 10 14 6.9164 -1.8673 0.2490 11 1 6.8967 -1.6424 1.7167 12 1 6.5026 -3.2632 -0.0436 13 1 8.2895 -1.6392 -0.2684 14 6 3.7919 0.2352 -2.7959 15 6 3.1169 1.2160 -3.5065 16 6 3.4676 1.4568 -4.8214 17 7 4.4238 0.7593 -5.4030 18 6 5.0829 -0.1846 -4.7598 19 6 4.7912 -0.4772 -3.4409 20 6 2.0014 -0.5953 -1.2527 21 1 -0.3633 0.5158 -0.8888 22 1 -0.3633 -1.0276 -0.0023 23 1 -0.3633 0.5119 0.8911 24 1 2.0079 1.7916 1.0121 25 1 1.4098 2.0212 -0.6603 26 1 4.1484 1.1747 0.2933 27 1 3.6937 2.0996 -1.1700 28 1 5.5710 1.0772 -1.4885 29 1 2.3301 1.7878 -3.0369 30 1 2.9495 2.2218 -5.3805 31 1 5.8601 -0.7347 -5.2693 32 1 5.3343 -1.2516 -2.9196 33 1 1.4099 -0.2713 -2.1089 34 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = 39.983547 kcal Electronic energy + Delta-G solvation = -16824.055781 eV Core-core repulsion = 14335.647348 eV Total energy + Delta-G solvation = -2488.408433 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81480 -37.98371 -34.38533 -31.54921 -30.38153 -29.87086 -28.22239 -25.29637 -24.21277 -22.54323 -22.12320 -20.52318 -19.26435 -17.23122 -16.07775 -15.24092 -14.90225 -14.63577 -14.25460 -13.81164 -13.70062 -13.11479 -12.95002 -12.75619 -12.63051 -11.92434 -11.64052 -11.16067 -10.88313 -10.83884 -10.64403 -10.48174 -10.25689 -10.09338 -10.03951 -8.77459 -8.69113 -8.47589 -8.43470 -8.18498 -7.90758 -6.36724 -4.15852 1.92834 2.17181 3.41926 3.42338 3.59073 4.46049 4.59061 4.62569 5.11518 5.21734 5.46365 5.50617 5.60004 5.68672 5.76373 5.85422 5.89656 6.03230 6.06443 6.11087 6.15244 6.30212 6.42827 6.53668 6.63894 6.69798 6.89041 7.03340 7.27962 7.31208 7.51838 7.62167 7.68730 8.15186 8.35849 8.68432 8.78602 9.53597 10.95977 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.015181 C = 0.008984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.301735 B = 1843.916954 C = 3115.895225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.506 5.506 3 C 0.034 3.966 4 C -0.104 4.104 5 C 0.086 3.914 6 C -0.576 4.576 7 H 0.056 0.944 8 C 0.024 3.976 9 N -0.902 5.902 10 Si 1.063 2.937 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.286 1.286 14 C -0.002 4.002 15 C -0.189 4.189 16 C 0.075 3.925 17 N -0.505 5.505 18 C 0.073 3.927 19 C -0.124 4.124 20 C 0.059 3.941 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.275 0.725 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.023 0.977 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 0.247 -1.569 6.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.229 5.229 3 C -0.094 4.094 4 C -0.142 4.142 5 C 0.085 3.915 6 C -0.614 4.614 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.537 5.537 10 Si 0.891 3.109 11 H -0.214 1.214 12 H -0.214 1.214 13 H -0.212 1.212 14 C -0.011 4.011 15 C -0.209 4.209 16 C -0.082 4.082 17 N -0.215 5.215 18 C -0.082 4.082 19 C -0.144 4.144 20 C -0.069 4.069 21 H 0.037 0.963 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.041 0.959 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.808 -0.025 -1.387 5.004 hybrid contribution -2.155 0.576 -0.348 2.257 sum -6.963 0.551 -1.735 7.197 Atomic orbital electron populations 1.22490 0.89733 1.01399 0.99828 1.65307 1.06154 1.15317 1.36125 1.23151 0.96857 0.89564 0.99869 1.22553 0.94321 0.96952 1.00419 1.18095 0.92478 0.94080 0.86854 1.21777 0.94647 0.99477 1.45482 0.92598 1.25701 0.97188 0.98694 0.96533 1.70740 1.40718 1.08635 1.33649 0.83624 0.75861 0.74797 0.76602 1.21364 1.21380 1.21159 1.21139 0.91785 0.90974 0.97234 1.21975 1.02306 1.00646 0.95949 1.22401 0.94948 0.98124 0.92705 1.67506 1.07685 1.07116 1.39155 1.22662 0.97984 0.94871 0.92705 1.22376 0.97189 1.00671 0.94140 1.23154 0.95172 0.99896 0.88667 0.96275 0.91833 0.92000 0.91272 0.95430 0.89982 0.93561 0.91230 0.86677 0.84328 0.83978 0.83562 0.95907 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 60.07 0.57 0.80 16 2 N -0.51 -9.70 5.66 -238.22 -1.35 -11.05 16 3 C 0.03 0.63 6.49 -2.18 -0.01 0.62 16 4 C -0.10 -2.29 4.36 -25.35 -0.11 -2.40 16 5 C 0.09 1.94 0.54 -155.43 -0.08 1.86 16 6 C -0.58 -14.55 6.68 -34.44 -0.23 -14.78 16 7 H 0.06 1.45 7.52 -52.49 -0.39 1.06 16 8 C 0.02 0.63 3.65 -17.82 -0.06 0.57 16 9 N -0.90 -24.74 12.33 55.43 0.68 -24.06 16 10 Si 1.06 23.70 29.91 -169.99 -5.08 18.62 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 14 C 0.00 -0.05 3.46 -104.32 -0.36 -0.41 16 15 C -0.19 -3.69 8.22 -39.44 -0.32 -4.02 16 16 C 0.08 1.41 11.18 -17.55 -0.20 1.21 16 17 N -0.50 -10.15 10.36 -13.25 -0.14 -10.29 16 18 C 0.07 1.48 11.18 -17.55 -0.20 1.29 16 19 C -0.12 -2.75 8.13 -39.44 -0.32 -3.07 16 20 C 0.06 1.20 5.51 -2.18 -0.01 1.19 16 21 H 0.02 0.27 7.97 -51.93 -0.41 -0.14 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.47 7.97 -51.92 -0.41 0.06 16 26 H 0.08 2.05 6.84 -51.93 -0.36 1.70 16 27 H 0.05 1.01 6.85 -51.93 -0.36 0.66 16 28 H 0.28 7.54 4.80 -40.82 -0.20 7.35 16 29 H 0.12 2.06 7.88 -52.48 -0.41 1.64 16 30 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.14 2.47 8.06 -52.49 -0.42 2.04 16 32 H 0.15 3.44 5.98 -52.48 -0.31 3.13 16 33 H 0.02 0.44 7.14 -51.93 -0.37 0.07 16 34 H 0.07 1.58 7.66 -51.93 -0.40 1.19 16 LS Contribution 269.66 15.07 4.06 4.06 Total: -1.00 -27.77 269.66 -7.70 -35.47 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.53 Total: 4.40 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.34 Total: -17.16 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.80 Total: -45.40 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.08 Total: 18.62 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.77 -7.70 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.455 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds