Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29456 * 1 3 3 Si 1.86801 * 119.99800 * 2 1 4 4 H 1.48502 * 109.46749 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47111 * 299.99206 * 3 2 1 6 6 H 1.48494 * 109.47249 * 59.99876 * 3 2 1 7 7 C 1.46710 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.38524 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.41062 * 127.21190 * 332.71644 * 9 7 2 11 11 N 1.33347 * 109.23893 * 180.02562 * 10 9 7 12 12 H 0.96994 * 124.34810 * 179.97438 * 11 10 9 13 13 C 1.38353 * 111.30390 * 359.97438 * 11 10 9 14 14 N 1.32594 * 132.44447 * 180.02562 * 13 11 10 15 15 C 1.31737 * 121.77854 * 179.97438 * 14 13 11 16 16 C 1.38391 * 121.51665 * 359.97438 * 15 14 13 17 17 C 1.38611 * 119.21339 * 0.02562 * 16 15 14 18 18 N 1.48012 * 120.97825 * 180.02562 * 17 16 15 19 19 O 1.31696 * 119.99871 * 138.43368 * 18 17 16 20 20 O 1.31698 * 119.99925 * 318.16856 * 18 17 16 21 21 C 1.39065 * 118.04857 * 0.27081 * 17 16 15 22 22 H 0.97003 * 120.00087 * 0.02562 * 1 2 3 23 23 H 1.08003 * 125.38235 * 0.02562 * 10 9 7 24 24 H 1.07991 * 119.23757 * 180.02562 * 15 14 13 25 25 H 1.08004 * 120.39350 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2285 1.6178 0.0000 4 1 3.6885 1.3464 0.0006 5 1 1.8699 2.3964 -1.2126 6 1 1.8697 2.3965 1.2124 7 6 2.0281 -1.2706 0.0006 8 1 3.1080 -1.2705 0.0010 9 6 1.3354 -2.4702 0.0006 10 6 0.0440 -2.7096 0.5151 11 7 -0.2732 -3.9911 0.3271 12 1 -1.1133 -4.3925 0.5991 13 6 0.7498 -4.6746 -0.3056 14 7 0.8794 -5.9374 -0.6887 15 6 1.9691 -6.3723 -1.2878 16 6 3.0363 -5.5307 -1.5485 17 6 2.9563 -4.1997 -1.1699 18 7 4.0743 -3.2652 -1.4301 19 8 3.8261 -2.0440 -1.8562 20 8 5.3169 -3.6532 -1.2304 21 6 1.7970 -3.7692 -0.5338 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5880 -1.9717 0.9867 24 1 2.0306 -7.4093 -1.5829 25 1 3.9209 -5.9065 -2.0411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242801.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = 76.785121 kcal Electronic energy + Delta-G solvation = -15801.751402 eV Core-core repulsion = 12977.846705 eV Total energy + Delta-G solvation = -2823.904697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33337 -39.85884 -38.61580 -35.58455 -35.29028 -34.03003 -31.60170 -30.41368 -28.02908 -26.58372 -23.94839 -23.53318 -21.76372 -20.26119 -19.19977 -18.25886 -18.10422 -17.46480 -16.83982 -16.33790 -15.95169 -15.80241 -15.48833 -14.52735 -13.95103 -13.63756 -13.25200 -13.07894 -12.92899 -12.44289 -12.29122 -12.20793 -11.95788 -11.74652 -11.43399 -11.06153 -10.70554 -9.54920 -8.91806 -8.71706 -6.02902 -1.61217 -0.03109 0.23726 0.27526 1.29588 1.41073 1.53844 2.02403 2.07016 2.27139 2.65276 3.16276 3.59735 3.68765 3.89032 3.98438 4.21742 4.53981 4.71660 4.87543 5.09034 5.17122 5.28136 5.57966 5.77071 6.05021 6.34731 6.61723 6.74577 6.95861 7.12037 8.28129 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.011520 C = 0.008158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.278161 B = 2430.037231 C = 3431.284687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.042 3.958 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.462 4.462 8 H 0.060 0.940 9 C 0.006 3.994 10 C -0.054 4.054 11 N -0.524 5.524 12 H 0.426 0.574 13 C 0.251 3.749 14 N -0.462 5.462 15 C 0.126 3.874 16 C -0.145 4.145 17 C 0.069 3.931 18 N -0.023 5.023 19 O -0.171 6.171 20 O -0.206 6.206 21 C -0.200 4.200 22 H 0.296 0.704 23 H 0.183 0.817 24 H 0.229 0.771 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -7.003 -0.468 7.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.184 4.184 11 N -0.127 5.127 12 H 0.265 0.735 13 C 0.013 3.987 14 N -0.177 5.177 15 C -0.041 4.041 16 C -0.169 4.169 17 C -0.022 4.022 18 N 0.452 4.548 19 O -0.366 6.366 20 O -0.393 6.393 21 C -0.213 4.213 22 H 0.108 0.892 23 H 0.200 0.800 24 H 0.246 0.754 25 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.903 -7.761 -0.095 8.286 hybrid contribution 1.038 1.719 -0.203 2.018 sum -1.865 -6.042 -0.297 6.330 Atomic orbital electron populations 1.68889 1.09104 1.31374 1.33829 1.27829 0.95335 1.03432 0.91135 0.85200 0.79257 0.76342 0.79274 1.19607 1.18787 1.17939 1.19677 0.93308 0.89378 1.46863 0.92167 1.18240 0.93809 0.90123 0.97785 1.22522 1.00823 0.83758 1.11316 1.40474 1.15056 1.08034 1.49105 0.73475 1.18161 0.89046 0.88923 1.02559 1.66458 1.26975 1.12807 1.11434 1.23125 0.85207 1.01194 0.94595 1.22117 1.03585 0.88207 1.02980 1.20348 0.85443 0.89647 1.06804 1.50692 1.03489 1.03064 0.97603 1.96302 1.91871 1.00867 1.47519 1.96122 1.02791 1.82146 1.58252 1.19677 0.94431 1.00211 1.06986 0.89151 0.80029 0.75446 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.01 11.22 23.25 0.26 -38.75 15 2 C 0.04 2.10 5.64 87.26 0.49 2.59 15 3 Si 0.98 39.80 29.65 68.60 2.03 41.83 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 7 C -0.46 -25.53 8.00 24.55 0.20 -25.33 15 8 H 0.06 3.54 6.20 -2.91 -0.02 3.52 15 9 C 0.01 0.31 5.93 -19.97 -0.12 0.19 15 10 C -0.05 -2.49 10.81 85.16 0.92 -1.57 15 11 N -0.52 -20.32 5.86 -189.39 -1.11 -21.43 15 12 H 0.43 12.76 8.96 -92.71 -0.83 11.93 15 13 C 0.25 10.43 8.39 133.51 1.12 11.55 15 14 N -0.46 -15.99 10.38 -192.58 -2.00 -17.99 15 15 C 0.13 3.50 11.14 84.74 0.94 4.44 15 16 C -0.15 -4.74 9.88 22.40 0.22 -4.52 15 17 C 0.07 3.10 6.56 36.66 0.24 3.34 15 18 N -0.02 -1.12 4.85 -45.78 -0.22 -1.34 15 19 O -0.17 -9.20 16.41 3.52 0.06 -9.14 15 20 O -0.21 -9.56 19.82 3.52 0.07 -9.49 15 21 C -0.20 -9.69 6.19 -20.03 -0.12 -9.82 15 22 H 0.30 12.76 8.27 -92.71 -0.77 11.99 15 23 H 0.18 8.21 6.80 -2.91 -0.02 8.19 15 24 H 0.23 3.49 8.06 -2.92 -0.02 3.47 15 25 H 0.18 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -64.67 238.39 3.42 -61.24 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.44 Total: 14.19 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.89 Total: -19.12 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -3.07 Total: -79.52 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.13 Total: -18.63 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -64.67 3.42 -61.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242801.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.029 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds