Wall clock time and date at job start Mon Mar 30 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47905 * 111.00054 * 2 1 4 4 C 1.54597 * 102.62841 * 265.53419 * 3 2 1 5 5 C 1.51579 * 102.83875 * 334.49437 * 4 3 2 6 6 C 1.37920 * 131.56173 * 196.02388 * 5 4 3 7 7 C 1.38310 * 120.08064 * 179.58226 * 6 5 4 8 8 C 1.38300 * 119.88234 * 359.94969 * 7 6 5 9 9 C 1.50702 * 119.86756 * 180.17339 * 8 7 6 10 10 H 1.08999 * 109.46952 * 159.97475 * 9 8 7 11 11 N 1.46896 * 109.46946 * 39.97581 * 9 8 7 12 12 C 1.50695 * 109.47136 * 279.97646 * 9 8 7 13 13 H 1.08009 * 119.99925 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00319 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99737 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00338 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47134 * 59.99770 * 16 14 12 18 18 H 1.48505 * 109.47080 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46898 * 299.99854 * 16 14 12 20 20 C 1.37915 * 120.26480 * 0.14862 * 8 7 6 21 21 C 1.38968 * 107.95615 * 15.85079 * 5 4 3 22 22 H 1.09001 * 109.47143 * 59.86760 * 1 2 3 23 23 H 1.09001 * 109.46946 * 179.87520 * 1 2 3 24 24 H 1.09003 * 109.46838 * 299.86966 * 1 2 3 25 25 H 1.09005 * 110.78095 * 147.24758 * 3 2 1 26 26 H 1.09004 * 110.77680 * 23.81791 * 3 2 1 27 27 H 1.09003 * 110.73868 * 216.15996 * 4 3 2 28 28 H 1.08991 * 110.89602 * 92.90141 * 4 3 2 29 29 H 1.08001 * 119.95908 * 359.60527 * 6 5 4 30 30 H 1.07999 * 120.05552 * 179.97438 * 7 6 5 31 31 H 1.00906 * 110.99873 * 176.04753 * 11 9 8 32 32 H 1.00899 * 111.00040 * 299.99934 * 11 9 8 33 33 H 0.97001 * 119.99700 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.89920 * 179.74909 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 2.2299 1.6543 -1.5040 5 6 2.4272 0.2632 -2.0729 6 6 2.9490 -0.1685 -3.2743 7 6 3.0260 -1.5216 -3.5505 8 6 2.5797 -2.4414 -2.6192 9 6 2.6673 -3.9157 -2.9189 10 1 2.6179 -4.4794 -1.9872 11 7 3.9379 -4.2026 -3.5980 12 6 1.5199 -4.3163 -3.8098 13 1 0.7990 -3.5772 -4.1270 14 6 1.3903 -5.6262 -4.2201 15 7 2.2679 -6.5262 -3.8335 16 14 -0.0324 -6.1229 -5.3240 17 1 0.0339 -5.3544 -6.5930 18 1 0.0541 -7.5757 -5.6194 19 1 -1.3166 -5.8336 -4.6366 20 6 2.0552 -2.0149 -1.4171 21 6 1.9708 -0.6528 -1.1327 22 1 -0.3633 0.5159 -0.8888 23 1 -0.3633 -1.0277 -0.0022 24 1 -0.3633 0.5118 0.8912 25 1 2.9379 1.4347 0.5514 26 1 1.2672 2.0759 0.4116 27 1 3.1221 2.2624 -1.6533 28 1 1.3586 2.1336 -1.9501 29 1 3.2983 0.5509 -4.0002 30 1 3.4343 -1.8591 -4.4917 31 1 4.0497 -5.1935 -3.7523 32 1 4.0079 -3.6915 -4.4651 33 1 2.1770 -7.4477 -4.1225 34 1 1.7047 -2.7382 -0.6957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:46 Heat of formation + Delta-G solvation = 34.558477 kcal Electronic energy + Delta-G solvation = -16022.746943 eV Core-core repulsion = 13534.103262 eV Total energy + Delta-G solvation = -2488.643681 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30546 -36.96327 -34.17745 -32.02147 -30.98797 -29.38348 -28.12741 -25.95015 -25.47724 -22.83596 -21.99990 -20.60907 -19.24859 -16.53633 -15.99066 -15.72638 -15.19158 -15.05405 -14.43040 -13.81893 -13.36435 -13.01277 -12.94842 -12.89084 -12.42250 -12.21554 -11.78871 -11.66119 -11.25210 -11.11311 -10.95497 -10.84102 -10.68314 -10.42014 -10.01373 -9.58425 -8.97832 -8.65924 -7.98546 -7.41493 -7.17139 -6.09399 -4.26669 1.98801 2.08807 3.23005 3.28242 3.31271 3.94649 4.28554 4.46367 4.84070 5.04124 5.09530 5.13270 5.37746 5.53128 5.57291 5.68022 5.74917 5.88525 5.94042 6.04064 6.17576 6.25622 6.30323 6.64202 6.68100 6.88929 7.08744 7.15346 7.28131 7.29897 7.73005 7.77903 7.84521 8.10217 8.66621 8.92746 9.11909 9.45172 10.87809 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.035380 B = 0.006784 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.216478 B = 4126.120936 C = 4390.230220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.496 5.496 3 C 0.050 3.950 4 C -0.104 4.104 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.117 4.117 8 C -0.007 4.007 9 C 0.240 3.760 10 H 0.048 0.952 11 N -0.849 5.849 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.111 4.111 21 C 0.078 3.922 22 H 0.029 0.971 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.356 0.644 32 H 0.311 0.689 33 H 0.266 0.734 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 12.903 3.840 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.214 5.214 3 C -0.077 4.077 4 C -0.142 4.142 5 C -0.172 4.172 6 C -0.114 4.114 7 C -0.136 4.136 8 C -0.009 4.009 9 C 0.130 3.870 10 H 0.065 0.935 11 N -0.379 5.379 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.136 4.136 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.131 4.131 21 C -0.017 4.017 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.172 0.828 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.694 12.747 5.010 13.714 hybrid contribution -1.732 -0.337 -2.086 2.732 sum -2.426 12.410 2.925 12.979 Atomic orbital electron populations 1.22450 0.86165 1.02852 1.00347 1.60202 1.08102 1.14202 1.38911 1.23113 1.00826 0.88281 0.95481 1.21548 1.01901 0.94855 0.95863 1.20684 1.06313 0.94608 0.95588 1.20282 1.00107 0.95699 0.95279 1.20862 1.01185 0.91630 0.99929 1.20257 0.91457 0.98018 0.91134 1.17996 0.87840 0.85447 0.95675 0.93457 1.59528 1.35726 1.15324 1.27322 1.21782 1.11540 0.94323 1.30726 0.92652 1.25017 0.96328 0.96241 0.96003 1.69739 1.35630 1.02880 1.44971 0.86572 0.82691 0.77361 0.80898 1.20213 1.21135 1.20172 1.20356 1.02760 0.92240 0.97735 1.19387 0.99638 0.93595 0.89111 0.95200 0.90853 0.91331 0.89656 0.90375 0.90413 0.91088 0.87266 0.86103 0.82820 0.87919 0.92368 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.28 60.07 0.56 0.94 16 2 N -0.50 -7.78 5.33 -176.84 -0.94 -8.72 16 3 C 0.05 0.63 7.00 -2.43 -0.02 0.61 16 4 C -0.10 -1.35 6.97 -26.61 -0.19 -1.54 16 5 C -0.17 -2.91 6.23 -104.04 -0.65 -3.56 16 6 C -0.10 -1.68 10.03 -39.67 -0.40 -2.07 16 7 C -0.12 -2.36 9.29 -39.53 -0.37 -2.73 16 8 C -0.01 -0.16 4.89 -104.72 -0.51 -0.68 16 9 C 0.24 6.05 2.94 -70.02 -0.21 5.84 16 10 H 0.05 1.31 7.99 -51.93 -0.41 0.89 16 11 N -0.85 -20.38 9.01 -6.65 -0.06 -20.44 16 12 C -0.54 -14.65 8.70 -34.44 -0.30 -14.95 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.70 16 15 N -0.89 -24.59 11.54 55.43 0.64 -23.95 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 C -0.11 -2.31 9.68 -39.27 -0.38 -2.69 16 21 C 0.08 1.43 5.59 -83.41 -0.47 0.97 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 2.35 6.66 -52.49 -0.35 2.00 16 31 H 0.36 9.09 7.08 -39.29 -0.28 8.81 16 32 H 0.31 7.05 7.33 -39.29 -0.29 6.76 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.12 2.43 8.03 -52.48 -0.42 2.01 16 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -28.33 280.50 -8.83 -37.15 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -4.65 Total: 13.98 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.02 Total: -18.17 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.36 Total: -53.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.33 -8.83 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.713 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds