Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47905 * 111.00054 * 2 1 4 4 C 1.54597 * 102.62841 * 265.53419 * 3 2 1 5 5 C 1.51579 * 102.83875 * 334.49437 * 4 3 2 6 6 C 1.37920 * 131.56173 * 196.02388 * 5 4 3 7 7 C 1.38310 * 120.08064 * 179.58226 * 6 5 4 8 8 C 1.38300 * 119.88234 * 359.94969 * 7 6 5 9 9 C 1.50702 * 119.86756 * 180.17339 * 8 7 6 10 10 H 1.08999 * 109.46952 * 159.97475 * 9 8 7 11 11 N 1.46896 * 109.46946 * 39.97581 * 9 8 7 12 12 C 1.50695 * 109.47136 * 279.97646 * 9 8 7 13 13 H 1.08009 * 119.99925 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00319 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99737 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00338 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47134 * 59.99770 * 16 14 12 18 18 H 1.48505 * 109.47080 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46898 * 299.99854 * 16 14 12 20 20 C 1.37915 * 120.26480 * 0.14862 * 8 7 6 21 21 C 1.38968 * 107.95615 * 15.85079 * 5 4 3 22 22 H 1.09001 * 109.47143 * 59.86760 * 1 2 3 23 23 H 1.09001 * 109.46946 * 179.87520 * 1 2 3 24 24 H 1.09003 * 109.46838 * 299.86966 * 1 2 3 25 25 H 1.09005 * 110.78095 * 147.24758 * 3 2 1 26 26 H 1.09004 * 110.77680 * 23.81791 * 3 2 1 27 27 H 1.09003 * 110.73868 * 216.15996 * 4 3 2 28 28 H 1.08991 * 110.89602 * 92.90141 * 4 3 2 29 29 H 1.08001 * 119.95908 * 359.60527 * 6 5 4 30 30 H 1.07999 * 120.05552 * 179.97438 * 7 6 5 31 31 H 1.00906 * 110.99873 * 176.04753 * 11 9 8 32 32 H 1.00899 * 111.00040 * 299.99934 * 11 9 8 33 33 H 0.97001 * 119.99700 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.89920 * 179.74909 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 2.2299 1.6543 -1.5040 5 6 2.4272 0.2632 -2.0729 6 6 2.9490 -0.1685 -3.2743 7 6 3.0260 -1.5216 -3.5505 8 6 2.5797 -2.4414 -2.6192 9 6 2.6673 -3.9157 -2.9189 10 1 2.6179 -4.4794 -1.9872 11 7 3.9379 -4.2026 -3.5980 12 6 1.5199 -4.3163 -3.8098 13 1 0.7990 -3.5772 -4.1270 14 6 1.3903 -5.6262 -4.2201 15 7 2.2679 -6.5262 -3.8335 16 14 -0.0324 -6.1229 -5.3240 17 1 0.0339 -5.3544 -6.5930 18 1 0.0541 -7.5757 -5.6194 19 1 -1.3166 -5.8336 -4.6366 20 6 2.0552 -2.0149 -1.4171 21 6 1.9708 -0.6528 -1.1327 22 1 -0.3633 0.5159 -0.8888 23 1 -0.3633 -1.0277 -0.0022 24 1 -0.3633 0.5118 0.8912 25 1 2.9379 1.4347 0.5514 26 1 1.2672 2.0759 0.4116 27 1 3.1221 2.2624 -1.6533 28 1 1.3586 2.1336 -1.9501 29 1 3.2983 0.5509 -4.0002 30 1 3.4343 -1.8591 -4.4917 31 1 4.0497 -5.1935 -3.7523 32 1 4.0079 -3.6915 -4.4651 33 1 2.1770 -7.4477 -4.1225 34 1 1.7047 -2.7382 -0.6957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 15.802188 kcal Electronic energy + Delta-G solvation = -16023.560277 eV Core-core repulsion = 13534.103262 eV Total energy + Delta-G solvation = -2489.457015 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60534 -38.49741 -35.96481 -33.61193 -32.66171 -30.74913 -29.61041 -27.82519 -26.73919 -24.42015 -23.49504 -21.86828 -20.82313 -18.58685 -17.48536 -17.06344 -16.65186 -16.52511 -16.13785 -15.17631 -14.87849 -14.76753 -14.46036 -14.11346 -13.82211 -13.50596 -13.37170 -13.07045 -12.85955 -12.76653 -12.64150 -12.38446 -12.06391 -11.98781 -11.84876 -11.36638 -10.74036 -10.25953 -9.54084 -9.18795 -8.74437 -8.13529 -6.40859 0.51434 0.59065 1.36649 1.37244 1.45986 2.34099 2.76479 2.93046 3.04363 3.71936 3.93512 4.12712 4.21286 4.27582 4.33065 4.52360 4.61946 4.66803 4.67739 4.76424 4.82242 4.90308 4.96894 5.07544 5.27929 5.33803 5.53196 5.58395 5.64236 5.80522 5.99319 6.05243 6.12558 6.41088 6.61102 6.89501 7.09857 7.35794 8.80324 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.035380 B = 0.006784 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.216478 B = 4126.120936 C = 4390.230220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.513 5.513 3 C 0.049 3.951 4 C -0.097 4.097 5 C -0.169 4.169 6 C -0.090 4.090 7 C -0.131 4.131 8 C -0.035 4.035 9 C 0.245 3.755 10 H 0.007 0.993 11 N -0.841 5.841 12 C -0.560 4.560 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.916 5.916 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.276 1.276 20 C -0.136 4.136 21 C 0.077 3.923 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.345 0.655 32 H 0.320 0.680 33 H 0.269 0.731 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 15.722 3.623 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.232 5.232 3 C -0.077 4.077 4 C -0.135 4.135 5 C -0.171 4.171 6 C -0.108 4.108 7 C -0.150 4.150 8 C -0.036 4.036 9 C 0.135 3.865 10 H 0.024 0.976 11 N -0.370 5.370 12 C -0.599 4.599 13 H 0.064 0.936 14 C -0.178 4.178 15 N -0.555 5.555 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.201 1.201 20 C -0.157 4.157 21 C -0.019 4.019 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.354 15.591 4.801 16.370 hybrid contribution -1.515 -1.145 -1.921 2.702 sum -2.870 14.446 2.880 15.007 Atomic orbital electron populations 1.22496 0.84835 1.02280 1.02066 1.60174 1.09305 1.16164 1.37522 1.23315 1.02038 0.86806 0.95517 1.21653 1.03789 0.92359 0.95673 1.21269 1.04236 0.96891 0.94735 1.20594 0.98940 0.95009 0.96242 1.20913 1.01831 0.92751 0.99524 1.20016 0.94212 0.96584 0.92788 1.17765 0.87750 0.87383 0.93600 0.97550 1.59481 1.35283 1.14551 1.27687 1.21971 1.12042 0.94576 1.31340 0.93586 1.25763 0.98675 0.96133 0.97218 1.69844 1.36911 1.03105 1.45670 0.85582 0.79478 0.77236 0.79162 1.19500 1.20403 1.20134 1.20298 1.04230 0.93711 0.97416 1.19526 0.99015 0.92769 0.90558 0.94864 0.92749 0.88083 0.89144 0.87012 0.87981 0.89304 0.83814 0.86154 0.84010 0.87004 0.92189 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.28 127.69 1.19 1.90 16 2 N -0.51 -15.03 5.33 -713.40 -3.80 -18.84 16 3 C 0.05 1.02 7.00 86.65 0.61 1.63 16 4 C -0.10 -2.09 6.97 30.67 0.21 -1.87 16 5 C -0.17 -5.36 6.23 -19.48 -0.12 -5.48 16 6 C -0.09 -2.97 10.03 22.21 0.22 -2.75 16 7 C -0.13 -5.30 9.29 22.30 0.21 -5.09 16 8 C -0.03 -1.61 4.89 -19.93 -0.10 -1.71 16 9 C 0.25 13.02 2.94 43.42 0.13 13.14 16 10 H 0.01 0.39 7.99 -2.39 -0.02 0.37 16 11 N -0.84 -42.05 9.01 -174.97 -1.58 -43.63 16 12 C -0.56 -31.25 8.70 25.60 0.22 -31.03 16 13 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 14 C 0.02 1.23 5.38 84.65 0.46 1.69 16 15 N -0.92 -51.75 11.54 21.45 0.25 -51.50 16 16 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.14 -5.94 9.68 22.47 0.22 -5.72 16 21 C 0.08 2.78 5.59 38.28 0.21 3.00 16 22 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.10 1.83 8.11 -2.39 -0.02 1.81 16 25 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.11 1.60 7.76 -2.38 -0.02 1.58 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 30 H 0.12 4.72 6.66 -2.91 -0.02 4.70 16 31 H 0.35 18.39 7.08 -89.69 -0.63 17.76 16 32 H 0.32 14.90 7.33 -89.69 -0.66 14.24 16 33 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.10 4.49 8.03 -2.91 -0.02 4.47 16 Total: -1.00 -63.00 280.50 0.16 -62.84 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.18 Total: 37.96 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 3.45 Total: -32.29 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -5.13 Total: -113.96 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -63.00 0.16 -62.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.638 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds