Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47913 * 111.00208 * 2 1 4 4 C 1.54600 * 102.62406 * 149.11113 * 3 2 1 5 5 C 1.51573 * 102.83760 * 334.46766 * 4 3 2 6 6 C 1.37916 * 131.56563 * 196.07212 * 5 4 3 7 7 C 1.38302 * 120.08624 * 179.37284 * 6 5 4 8 8 C 1.38310 * 119.87935 * 0.54449 * 7 6 5 9 9 C 1.50698 * 119.86545 * 179.83435 * 8 7 6 10 10 H 1.09001 * 109.46875 * 199.72346 * 9 8 7 11 11 N 1.46895 * 109.47244 * 319.72296 * 9 8 7 12 12 C 1.50697 * 109.46993 * 79.72667 * 9 8 7 13 13 H 1.07991 * 120.00449 * 359.72131 * 12 9 8 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.37912 * 120.26118 * 359.55519 * 8 7 6 21 21 C 1.38969 * 107.95380 * 15.93626 * 5 4 3 22 22 H 1.08990 * 109.47094 * 300.02997 * 1 2 3 23 23 H 1.08996 * 109.46638 * 60.03097 * 1 2 3 24 24 H 1.08993 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.09001 * 110.77772 * 30.82975 * 3 2 1 26 26 H 1.08996 * 110.93941 * 267.46808 * 3 2 1 27 27 H 1.08997 * 110.74185 * 216.12781 * 4 3 2 28 28 H 1.09004 * 110.89689 * 92.87790 * 4 3 2 29 29 H 1.08005 * 119.95676 * 359.64279 * 6 5 4 30 30 H 1.07998 * 120.06327 * 180.29179 * 7 6 5 31 31 H 1.00904 * 110.99999 * 59.99756 * 11 9 8 32 32 H 1.00895 * 111.00220 * 183.95559 * 11 9 8 33 33 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.89799 * 180.25267 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6395 6 6 3.7400 -0.4717 2.7496 7 6 3.2941 -1.6223 3.3739 8 6 2.1916 -2.2932 2.8764 9 6 1.7082 -3.5490 3.5547 10 1 1.0879 -4.1196 2.8635 11 7 2.8626 -4.3613 3.9615 12 6 0.8980 -3.1827 4.7714 13 1 0.7519 -2.1445 5.0304 14 6 0.3476 -4.1732 5.5570 15 7 0.5251 -5.4375 5.2414 16 14 -0.6502 -3.7192 7.0695 17 1 -1.8160 -2.8936 6.6640 18 1 -1.1276 -4.9569 7.7372 19 1 0.2004 -2.9466 8.0101 20 6 1.5296 -1.8142 1.7654 21 6 1.9708 -0.6531 1.1325 22 1 -0.3633 0.5143 0.8896 23 1 -0.3632 0.5133 -0.8903 24 1 -0.3633 -1.0276 0.0005 25 1 1.3207 2.0555 0.5223 26 1 2.1807 1.7284 -1.0170 27 1 3.5166 2.1112 1.3912 28 1 4.1596 1.0578 0.0907 29 1 4.6035 0.0507 3.1344 30 1 3.8081 -1.9986 4.2460 31 1 3.4536 -3.8540 4.6029 32 1 2.5647 -5.2386 4.3609 33 1 0.1376 -6.1343 5.7938 34 1 0.6670 -2.3405 1.3842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 31.540648 kcal Electronic energy + Delta-G solvation = -16024.215377 eV Core-core repulsion = 13535.440833 eV Total energy + Delta-G solvation = -2488.774544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22329 -36.88685 -34.21069 -32.35891 -31.05257 -29.36215 -28.11383 -25.84631 -25.38770 -22.83693 -21.96980 -20.61604 -19.28325 -16.52715 -15.93167 -15.79151 -15.33331 -15.00458 -14.47101 -13.81715 -13.34974 -13.05585 -12.95629 -12.89551 -12.30842 -12.17898 -11.64388 -11.50234 -11.31331 -11.17096 -11.03464 -10.85719 -10.69732 -10.41449 -10.05664 -9.55420 -9.36914 -8.65996 -7.96140 -7.24546 -7.14107 -6.09297 -4.26499 2.05470 2.11543 3.22778 3.27994 3.31043 3.97111 4.30095 4.52288 4.82755 4.89300 5.12459 5.20803 5.32612 5.54552 5.57033 5.71691 5.75200 5.87071 5.92445 6.00748 6.14748 6.18673 6.34085 6.56417 6.69524 6.89287 7.07514 7.14727 7.30144 7.37099 7.73148 7.77457 7.85967 8.10900 8.67164 8.93210 9.12503 9.45254 10.87881 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.006898 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.939636 B = 4058.214118 C = 4314.953050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.481 5.481 3 C 0.046 3.954 4 C -0.077 4.077 5 C -0.171 4.171 6 C -0.087 4.087 7 C -0.128 4.128 8 C 0.001 3.999 9 C 0.240 3.760 10 H 0.047 0.953 11 N -0.849 5.849 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.136 4.136 21 C 0.084 3.916 22 H 0.036 0.964 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.312 0.688 32 H 0.355 0.645 33 H 0.266 0.734 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 10.936 -6.843 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.196 5.196 3 C -0.081 4.081 4 C -0.114 4.114 5 C -0.174 4.174 6 C -0.106 4.106 7 C -0.147 4.147 8 C 0.000 4.000 9 C 0.130 3.870 10 H 0.064 0.936 11 N -0.379 5.379 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.157 4.157 21 C -0.013 4.013 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.171 0.829 33 H 0.076 0.924 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.870 10.508 -8.103 13.576 hybrid contribution -1.349 0.627 2.431 2.850 sum 1.521 11.135 -5.671 12.589 Atomic orbital electron populations 1.22523 0.86399 1.03188 1.00818 1.60638 1.08755 1.13916 1.36270 1.23206 0.95569 0.88454 1.00842 1.21154 0.97254 0.96048 0.96967 1.20216 0.99705 0.99011 0.98438 1.20268 0.99069 0.96515 0.94733 1.20809 0.97962 0.95231 1.00742 1.20208 0.91882 0.96358 0.91566 1.17993 0.88584 0.86640 0.93757 0.93552 1.59518 1.21044 1.09649 1.47668 1.21785 1.33322 0.93265 1.09968 0.92645 1.25019 0.95756 0.94908 0.97915 1.69743 1.45351 0.99076 1.39067 0.86576 0.80514 0.77778 0.82674 1.20193 1.21139 1.20202 1.20311 1.01995 0.96161 0.97246 1.19502 0.96405 0.95819 0.89569 0.94539 0.91255 0.90568 0.92734 0.89396 0.90937 0.90293 0.87168 0.86186 0.87876 0.82877 0.92379 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.16 60.06 0.55 0.79 16 2 N -0.48 -7.53 5.31 -176.85 -0.94 -8.47 16 3 C 0.05 0.57 6.91 -2.43 -0.02 0.56 16 4 C -0.08 -1.01 7.04 -26.61 -0.19 -1.20 16 5 C -0.17 -2.96 6.23 -104.04 -0.65 -3.61 16 6 C -0.09 -1.55 10.03 -39.68 -0.40 -1.94 16 7 C -0.13 -2.60 9.29 -39.53 -0.37 -2.96 16 8 C 0.00 0.03 4.89 -104.72 -0.51 -0.49 16 9 C 0.24 6.06 2.94 -70.02 -0.21 5.85 16 10 H 0.05 1.28 7.99 -51.93 -0.41 0.87 16 11 N -0.85 -20.46 9.02 -6.65 -0.06 -20.52 16 12 C -0.54 -14.67 8.70 -34.44 -0.30 -14.97 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 15 N -0.89 -24.62 11.55 55.43 0.64 -23.98 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.14 -2.83 9.15 -39.27 -0.36 -3.19 16 21 C 0.08 1.55 5.95 -83.40 -0.50 1.06 16 22 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.06 7.31 -51.93 -0.38 0.68 16 25 H 0.05 0.63 7.84 -51.93 -0.41 0.23 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.12 2.35 6.66 -52.49 -0.35 2.00 16 31 H 0.31 7.09 7.34 -39.29 -0.29 6.80 16 32 H 0.36 9.11 7.09 -39.29 -0.28 8.83 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 34 H 0.11 2.33 7.35 -52.49 -0.39 1.94 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -28.53 278.74 -8.79 -37.32 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.58 Total: 13.92 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.04 Total: -18.41 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.36 Total: -52.96 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.53 -8.79 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.859 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds