Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47913 * 111.00208 * 2 1 4 4 C 1.54600 * 102.62406 * 149.11113 * 3 2 1 5 5 C 1.51573 * 102.83760 * 334.46766 * 4 3 2 6 6 C 1.37916 * 131.56563 * 196.07212 * 5 4 3 7 7 C 1.38302 * 120.08624 * 179.37284 * 6 5 4 8 8 C 1.38310 * 119.87935 * 0.54449 * 7 6 5 9 9 C 1.50698 * 119.86545 * 179.83435 * 8 7 6 10 10 H 1.09001 * 109.46875 * 199.72346 * 9 8 7 11 11 N 1.46895 * 109.47244 * 319.72296 * 9 8 7 12 12 C 1.50697 * 109.46993 * 79.72667 * 9 8 7 13 13 H 1.07991 * 120.00449 * 359.72131 * 12 9 8 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 9 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.37912 * 120.26118 * 359.55519 * 8 7 6 21 21 C 1.38969 * 107.95380 * 15.93626 * 5 4 3 22 22 H 1.08990 * 109.47094 * 300.02997 * 1 2 3 23 23 H 1.08996 * 109.46638 * 60.03097 * 1 2 3 24 24 H 1.08993 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.09001 * 110.77772 * 30.82975 * 3 2 1 26 26 H 1.08996 * 110.93941 * 267.46808 * 3 2 1 27 27 H 1.08997 * 110.74185 * 216.12781 * 4 3 2 28 28 H 1.09004 * 110.89689 * 92.87790 * 4 3 2 29 29 H 1.08005 * 119.95676 * 359.64279 * 6 5 4 30 30 H 1.07998 * 120.06327 * 180.29179 * 7 6 5 31 31 H 1.00904 * 110.99999 * 59.99756 * 11 9 8 32 32 H 1.00895 * 111.00220 * 183.95559 * 11 9 8 33 33 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.89799 * 180.25267 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0127 1.6395 6 6 3.7400 -0.4717 2.7496 7 6 3.2941 -1.6223 3.3739 8 6 2.1916 -2.2932 2.8764 9 6 1.7082 -3.5490 3.5547 10 1 1.0879 -4.1196 2.8635 11 7 2.8626 -4.3613 3.9615 12 6 0.8980 -3.1827 4.7714 13 1 0.7519 -2.1445 5.0304 14 6 0.3476 -4.1732 5.5570 15 7 0.5251 -5.4375 5.2414 16 14 -0.6502 -3.7192 7.0695 17 1 -1.8160 -2.8936 6.6640 18 1 -1.1276 -4.9569 7.7372 19 1 0.2004 -2.9466 8.0101 20 6 1.5296 -1.8142 1.7654 21 6 1.9708 -0.6531 1.1325 22 1 -0.3633 0.5143 0.8896 23 1 -0.3632 0.5133 -0.8903 24 1 -0.3633 -1.0276 0.0005 25 1 1.3207 2.0555 0.5223 26 1 2.1807 1.7284 -1.0170 27 1 3.5166 2.1112 1.3912 28 1 4.1596 1.0578 0.0907 29 1 4.6035 0.0507 3.1344 30 1 3.8081 -1.9986 4.2460 31 1 3.4536 -3.8540 4.6029 32 1 2.5647 -5.2386 4.3609 33 1 0.1376 -6.1343 5.7938 34 1 0.6670 -2.3405 1.3842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 12.591456 kcal Electronic energy + Delta-G solvation = -16025.037076 eV Core-core repulsion = 13535.440833 eV Total energy + Delta-G solvation = -2489.596243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53318 -38.42283 -35.97552 -33.83718 -32.83328 -30.75794 -29.60763 -27.79211 -26.60130 -24.43313 -23.42001 -21.89745 -20.86322 -18.58444 -17.44289 -17.12865 -16.67204 -16.48414 -16.23988 -15.24679 -14.89711 -14.70878 -14.49838 -14.20364 -13.74886 -13.55352 -13.20017 -12.95596 -12.84455 -12.70759 -12.59156 -12.32335 -12.25853 -11.99606 -11.93951 -11.33318 -10.77715 -10.64350 -9.52805 -9.17540 -8.56087 -8.13311 -6.40719 0.58112 0.62017 1.36710 1.36835 1.45832 2.34020 2.75620 2.99572 3.07936 3.71107 3.78583 4.16252 4.17872 4.28246 4.33841 4.50096 4.57182 4.67957 4.70128 4.72726 4.83086 4.89133 5.00000 5.08145 5.15595 5.33690 5.51776 5.59662 5.66228 5.79822 5.98258 6.07382 6.14818 6.38687 6.61397 6.89810 7.10026 7.35845 8.80401 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.006898 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.939636 B = 4058.214118 C = 4314.953050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.492 5.492 3 C 0.045 3.955 4 C -0.072 4.072 5 C -0.172 4.172 6 C -0.081 4.081 7 C -0.144 4.144 8 C -0.027 4.027 9 C 0.245 3.755 10 H 0.006 0.994 11 N -0.841 5.841 12 C -0.559 4.559 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.916 5.916 16 Si 0.960 3.040 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.270 1.270 20 C -0.160 4.160 21 C 0.082 3.918 22 H 0.032 0.968 23 H 0.101 0.899 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.119 0.881 31 H 0.320 0.680 32 H 0.345 0.655 33 H 0.269 0.731 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 13.666 -7.284 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.207 5.207 3 C -0.081 4.081 4 C -0.109 4.109 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.164 4.164 8 C -0.029 4.029 9 C 0.135 3.865 10 H 0.024 0.976 11 N -0.370 5.370 12 C -0.599 4.599 13 H 0.064 0.936 14 C -0.178 4.178 15 N -0.556 5.556 16 Si 0.785 3.215 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.195 1.195 20 C -0.181 4.181 21 C -0.016 4.016 22 H 0.051 0.949 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.495 13.260 -8.561 16.166 hybrid contribution -1.530 -0.176 2.449 2.893 sum 1.964 13.084 -6.111 14.574 Atomic orbital electron populations 1.22568 0.85377 1.02752 1.02201 1.60647 1.09796 1.15827 1.34411 1.23426 0.95232 0.86612 1.02797 1.21295 0.98082 0.94805 0.96761 1.20811 0.98510 1.00125 0.98100 1.20580 0.99635 0.95336 0.94402 1.20858 0.97660 0.96548 1.01308 1.19991 0.93827 0.96097 0.92957 1.17765 0.88353 0.87652 0.92727 0.97598 1.59472 1.20753 1.09141 1.47651 1.21969 1.34105 0.92872 1.10934 0.93591 1.25765 0.96631 0.94804 1.00589 1.69848 1.45884 0.99804 1.40022 0.85585 0.78964 0.77657 0.79269 1.20096 1.20409 1.19530 1.20259 1.02179 0.97786 0.97908 1.19683 0.96870 0.95026 0.90016 0.94890 0.88009 0.92105 0.91522 0.86450 0.88312 0.88730 0.83678 0.86338 0.86990 0.84064 0.92201 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.16 127.69 1.17 1.62 16 2 N -0.49 -14.33 5.31 -713.43 -3.79 -18.12 16 3 C 0.04 0.93 6.91 86.65 0.60 1.53 16 4 C -0.07 -1.58 7.04 30.67 0.22 -1.37 16 5 C -0.17 -5.54 6.23 -19.49 -0.12 -5.66 16 6 C -0.08 -2.71 10.03 22.21 0.22 -2.49 16 7 C -0.14 -5.87 9.29 22.30 0.21 -5.67 16 8 C -0.03 -1.28 4.89 -19.93 -0.10 -1.38 16 9 C 0.25 13.04 2.94 43.42 0.13 13.17 16 10 H 0.01 0.36 7.99 -2.39 -0.02 0.34 16 11 N -0.84 -42.25 9.02 -174.97 -1.58 -43.83 16 12 C -0.56 -31.25 8.70 25.60 0.22 -31.02 16 13 H 0.05 2.59 7.74 -2.92 -0.02 2.57 16 14 C 0.02 1.23 5.38 84.66 0.46 1.68 16 15 N -0.92 -51.79 11.55 21.45 0.25 -51.54 16 16 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.16 -6.93 9.15 22.47 0.21 -6.72 16 21 C 0.08 2.96 5.95 38.28 0.23 3.19 16 22 H 0.03 0.86 8.09 -2.39 -0.02 0.84 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 1.72 7.31 -2.39 -0.02 1.70 16 25 H 0.07 1.25 7.84 -2.39 -0.02 1.24 16 26 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.12 4.70 6.66 -2.91 -0.02 4.69 16 31 H 0.32 15.00 7.34 -89.69 -0.66 14.35 16 32 H 0.34 18.42 7.09 -89.70 -0.64 17.79 16 33 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.10 4.42 7.35 -2.91 -0.02 4.40 16 Total: -1.00 -63.20 278.74 0.16 -63.04 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.18 Total: 38.14 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.43 Total: -33.12 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -5.12 Total: -113.49 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -63.20 0.16 -63.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.628 kcal (2) G-P(sol) polarization free energy of solvation -63.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds