Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47217 * 300.00178 * 3 2 1 6 6 H 1.48500 * 109.46727 * 60.00324 * 3 2 1 7 7 C 1.40303 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.39690 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.39017 * 125.51580 * 179.97438 * 9 7 2 11 11 C 1.41175 * 106.47912 * 180.02562 * 10 9 7 12 12 C 1.40039 * 133.73950 * 180.02562 * 11 10 9 13 13 C 1.39662 * 117.90935 * 179.77858 * 12 11 10 14 14 C 1.47590 * 120.46953 * 180.22211 * 13 12 11 15 15 O 1.21487 * 120.00621 * 0.23370 * 14 13 12 16 16 O 1.34734 * 119.99947 * 180.23228 * 14 13 12 17 17 C 1.40088 * 119.05877 * 0.45453 * 13 12 11 18 18 N 1.31481 * 121.44670 * 359.48415 * 17 13 12 19 19 C 1.32574 * 122.06713 * 0.28549 * 18 17 13 20 20 O 1.34901 * 132.28857 * 179.97438 * 19 18 17 21 21 H 0.96999 * 120.00202 * 359.97438 * 1 2 3 22 22 H 1.08001 * 126.75795 * 0.02805 * 10 9 7 23 23 H 1.07998 * 121.04140 * 359.97084 * 12 11 10 24 24 H 0.96693 * 117.00039 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.27995 * 179.77161 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8822 2.3964 -1.2124 6 1 1.8822 2.3963 1.2126 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2150 -0.0001 9 6 1.3099 -2.4248 -0.0005 10 6 1.8860 -3.6900 -0.0016 11 6 0.8198 -4.6154 -0.0017 12 6 0.7519 -6.0141 -0.0022 13 6 -0.5125 -6.6072 0.0025 14 6 -0.6499 -8.0767 0.0073 15 8 0.3411 -8.7795 0.0114 16 8 -1.8743 -8.6389 0.0071 17 6 -1.6486 -5.7876 -0.0023 18 7 -1.5485 -4.4766 -0.0011 19 6 -0.3748 -3.8602 -0.0008 20 8 -0.0350 -2.5547 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 2.9413 -3.9196 -0.0021 23 1 1.6491 -6.6153 -0.0029 24 1 -1.9138 -9.6050 0.0107 25 1 -2.6281 -6.2424 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244881.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = -71.185661 kcal Electronic energy + Delta-G solvation = -15176.443285 eV Core-core repulsion = 12313.829343 eV Total energy + Delta-G solvation = -2862.613943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15873 -39.82258 -37.56064 -35.82948 -34.14171 -32.45627 -30.72061 -29.53191 -26.05573 -24.28544 -22.25224 -20.95768 -20.19704 -18.60154 -17.65111 -16.74402 -16.57236 -15.64119 -15.40153 -14.97152 -14.94487 -14.09852 -13.28814 -12.66519 -12.44579 -12.30929 -12.15287 -11.73618 -11.58794 -11.52829 -11.33439 -11.08583 -10.56208 -10.36123 -10.02340 -9.67716 -8.58525 -8.23762 -7.57650 -7.33029 -4.92294 1.26009 1.88003 2.72355 2.81063 2.88665 3.04465 3.30158 3.52126 3.52785 3.69461 4.61229 4.78217 5.43115 5.47946 5.57223 5.74928 5.88166 6.45481 6.57065 6.62642 6.72186 6.73281 6.95477 7.16449 7.36634 7.60022 8.00644 8.11088 8.15493 8.47982 8.81562 9.62553 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073319 B = 0.005756 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.800107 B = 4863.633938 C = 5235.585630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.059 3.941 3 Si 0.934 3.066 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.408 4.408 8 H 0.120 0.880 9 C 0.243 3.757 10 C -0.409 4.409 11 C -0.094 4.094 12 C -0.048 4.048 13 C -0.190 4.190 14 C 0.541 3.459 15 O -0.528 6.528 16 O -0.514 6.514 17 C 0.102 3.898 18 N -0.465 5.465 19 C 0.213 3.787 20 O -0.155 6.155 21 H 0.296 0.704 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.407 0.593 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -4.095 -0.004 4.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.167 4.167 3 Si 0.756 3.244 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.435 4.435 8 H 0.138 0.862 9 C 0.192 3.808 10 C -0.430 4.430 11 C -0.098 4.098 12 C -0.073 4.073 13 C -0.194 4.194 14 C 0.386 3.614 15 O -0.419 6.419 16 O -0.325 6.325 17 C -0.059 4.059 18 N -0.182 5.182 19 C 0.034 3.966 20 O -0.051 6.051 21 H 0.107 0.893 22 H 0.150 0.850 23 H 0.150 0.850 24 H 0.265 0.735 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.575 -2.929 -0.003 3.326 hybrid contribution 1.051 -0.607 0.004 1.213 sum -0.524 -3.536 0.001 3.574 Atomic orbital electron populations 1.69710 1.07890 1.31249 1.27703 1.26427 0.95249 1.02914 0.92085 0.85798 0.80627 0.78706 0.79243 1.17620 1.19087 1.19093 1.19233 0.95390 0.87021 1.41899 0.86181 1.19644 0.77383 0.94566 0.89201 1.20901 0.97370 0.89930 1.34790 1.19402 0.95757 0.93366 1.01277 1.20763 0.95820 0.92475 0.98209 1.19521 0.96033 0.88952 1.14895 1.20828 0.80057 0.89195 0.71305 1.90835 1.39170 1.64249 1.47616 1.84602 1.32959 1.28733 1.86184 1.22242 0.97285 0.86185 1.00211 1.66022 1.25839 1.10740 1.15567 1.20201 0.89668 0.84654 1.02120 1.84607 1.24477 1.20026 1.76027 0.89266 0.85015 0.85013 0.73548 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.98 11.96 55.57 0.66 -17.32 15 2 C 0.06 1.33 5.50 -17.26 -0.09 1.24 15 3 Si 0.93 16.20 29.56 -169.99 -5.03 11.17 15 4 H -0.25 -4.24 7.11 56.52 0.40 -3.83 15 5 H -0.27 -4.56 7.11 56.52 0.40 -4.15 15 6 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 7 C -0.41 -9.71 9.30 -38.26 -0.36 -10.07 15 8 H 0.12 2.57 7.85 -52.49 -0.41 2.16 15 9 C 0.24 6.28 6.75 -38.75 -0.26 6.02 15 10 C -0.41 -9.96 10.95 -38.18 -0.42 -10.38 15 11 C -0.09 -2.28 6.18 -106.93 -0.66 -2.94 15 12 C -0.05 -1.03 9.78 -38.38 -0.38 -1.40 15 13 C -0.19 -3.74 5.89 -104.86 -0.62 -4.35 15 14 C 0.54 9.21 8.27 34.55 0.29 9.50 15 15 O -0.53 -10.08 17.20 -19.26 -0.33 -10.41 15 16 O -0.51 -6.53 12.69 -40.58 -0.51 -7.04 15 17 C 0.10 2.04 10.76 -17.01 -0.18 1.85 15 18 N -0.47 -11.01 10.35 -12.40 -0.13 -11.14 15 19 C 0.21 5.46 8.54 -16.06 -0.14 5.33 15 20 O -0.15 -4.24 8.88 1.74 0.02 -4.23 15 21 H 0.30 6.31 8.29 -40.82 -0.34 5.97 15 22 H 0.13 2.91 8.06 -52.49 -0.42 2.49 15 23 H 0.13 2.62 7.73 -52.49 -0.41 2.22 15 24 H 0.41 3.02 9.11 45.56 0.42 3.44 15 25 H 0.16 2.63 7.60 -52.49 -0.40 2.23 15 LS Contribution 242.51 15.07 3.65 3.65 Total: -1.00 -29.30 242.51 -4.84 -34.14 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -0.36 Total: 6.37 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.82 Total: -5.20 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 0.54 Total: -28.45 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.83 Total: -21.68 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.30 -4.84 -34.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244881.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds