Wall clock time and date at job start Mon Mar 30 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47217 * 300.00178 * 3 2 1 6 6 H 1.48500 * 109.46727 * 60.00324 * 3 2 1 7 7 C 1.40303 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.39690 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.39017 * 125.51580 * 179.97438 * 9 7 2 11 11 C 1.41175 * 106.47912 * 180.02562 * 10 9 7 12 12 C 1.40039 * 133.73950 * 180.02562 * 11 10 9 13 13 C 1.39662 * 117.90935 * 179.77858 * 12 11 10 14 14 C 1.47590 * 120.46953 * 180.22211 * 13 12 11 15 15 O 1.21487 * 120.00621 * 0.23370 * 14 13 12 16 16 O 1.34734 * 119.99947 * 180.23228 * 14 13 12 17 17 C 1.40088 * 119.05877 * 0.45453 * 13 12 11 18 18 N 1.31481 * 121.44670 * 359.48415 * 17 13 12 19 19 C 1.32574 * 122.06713 * 0.28549 * 18 17 13 20 20 O 1.34901 * 132.28857 * 179.97438 * 19 18 17 21 21 H 0.96999 * 120.00202 * 359.97438 * 1 2 3 22 22 H 1.08001 * 126.75795 * 0.02805 * 10 9 7 23 23 H 1.07998 * 121.04140 * 359.97084 * 12 11 10 24 24 H 0.96693 * 117.00039 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.27995 * 179.77161 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8822 2.3964 -1.2124 6 1 1.8822 2.3963 1.2126 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2150 -0.0001 9 6 1.3099 -2.4248 -0.0005 10 6 1.8860 -3.6900 -0.0016 11 6 0.8198 -4.6154 -0.0017 12 6 0.7519 -6.0141 -0.0022 13 6 -0.5125 -6.6072 0.0025 14 6 -0.6499 -8.0767 0.0073 15 8 0.3411 -8.7795 0.0114 16 8 -1.8743 -8.6389 0.0071 17 6 -1.6486 -5.7876 -0.0023 18 7 -1.5485 -4.4766 -0.0011 19 6 -0.3748 -3.8602 -0.0008 20 8 -0.0350 -2.5547 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 2.9413 -3.9196 -0.0021 23 1 1.6491 -6.6153 -0.0029 24 1 -1.9138 -9.6050 0.0107 25 1 -2.6281 -6.2424 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244881.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:55 Heat of formation + Delta-G solvation = -92.766913 kcal Electronic energy + Delta-G solvation = -15177.379118 eV Core-core repulsion = 12313.829343 eV Total energy + Delta-G solvation = -2863.549776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.96994 -41.20374 -39.25571 -37.07038 -35.87831 -34.23569 -32.43732 -31.31981 -27.80384 -25.87646 -23.97343 -22.49657 -22.01555 -20.27370 -19.10739 -18.45975 -18.03228 -17.32431 -17.01776 -16.57341 -16.53181 -15.69748 -14.69980 -14.30281 -14.06253 -13.95485 -13.87915 -13.50757 -13.23029 -13.04807 -12.76834 -12.57262 -11.95018 -11.82767 -11.72664 -11.35785 -10.33590 -9.98220 -9.42391 -9.01177 -6.74333 -0.37725 0.16213 1.26680 1.37839 1.55506 1.59416 1.84477 1.85798 2.06610 2.12375 2.87914 3.00058 3.68909 3.93218 4.02292 4.09215 4.24044 4.77805 4.87440 4.97731 5.04159 5.19637 5.44656 5.54340 5.58043 5.84013 6.24121 6.30890 6.65981 6.97818 7.07169 7.98410 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073319 B = 0.005756 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.800107 B = 4863.633938 C = 5235.585630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.017 3.983 3 Si 1.016 2.984 4 H -0.240 1.240 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.138 0.862 9 C 0.209 3.791 10 C -0.425 4.425 11 C -0.112 4.112 12 C -0.042 4.042 13 C -0.187 4.187 14 C 0.557 3.443 15 O -0.547 6.547 16 O -0.495 6.495 17 C 0.117 3.883 18 N -0.487 5.487 19 C 0.169 3.831 20 O -0.183 6.183 21 H 0.305 0.695 22 H 0.146 0.854 23 H 0.147 0.853 24 H 0.436 0.564 25 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -5.056 -0.003 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.163 1.163 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.155 0.845 9 C 0.159 3.841 10 C -0.445 4.445 11 C -0.115 4.115 12 C -0.067 4.067 13 C -0.191 4.191 14 C 0.402 3.598 15 O -0.439 6.439 16 O -0.309 6.309 17 C -0.045 4.045 18 N -0.204 5.204 19 C -0.008 4.008 20 O -0.080 6.080 21 H 0.116 0.884 22 H 0.164 0.836 23 H 0.164 0.836 24 H 0.298 0.702 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.614 -3.931 -0.002 4.249 hybrid contribution 0.891 -0.586 0.004 1.067 sum -0.722 -4.516 0.002 4.574 Atomic orbital electron populations 1.69791 1.09913 1.32848 1.28649 1.27549 0.95862 1.06474 0.90542 0.84630 0.79511 0.73198 0.79368 1.16264 1.18490 1.18501 1.19761 0.96377 0.87372 1.42177 0.84450 1.20214 0.77282 0.95989 0.90643 1.21120 0.98110 0.89837 1.35479 1.19570 0.95169 0.94522 1.02259 1.21025 0.97435 0.91475 0.96755 1.19783 0.95195 0.91077 1.13051 1.20160 0.80938 0.87793 0.70923 1.90849 1.40274 1.64341 1.48469 1.84513 1.29976 1.31370 1.85011 1.22973 0.99132 0.85012 0.97374 1.66071 1.25461 1.12417 1.16455 1.20534 0.90929 0.84525 1.04766 1.84520 1.25379 1.21393 1.76754 0.88385 0.83646 0.83568 0.70202 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.47 11.96 21.89 0.26 -39.21 15 2 C 0.02 0.78 5.50 85.36 0.47 1.25 15 3 Si 1.02 32.78 29.56 68.60 2.03 34.81 15 4 H -0.24 -7.17 7.11 99.48 0.71 -6.46 15 5 H -0.26 -8.11 7.11 99.48 0.71 -7.40 15 6 H -0.26 -8.11 7.11 99.48 0.71 -7.40 15 7 C -0.43 -21.07 9.30 23.12 0.22 -20.85 15 8 H 0.14 5.95 7.85 -2.91 -0.02 5.93 15 9 C 0.21 11.31 6.75 22.81 0.15 11.46 15 10 C -0.42 -21.40 10.95 23.18 0.25 -21.15 15 11 C -0.11 -5.51 6.18 -21.36 -0.13 -5.64 15 12 C -0.04 -1.76 9.78 23.05 0.23 -1.53 15 13 C -0.19 -6.95 5.89 -20.02 -0.12 -7.07 15 14 C 0.56 17.00 8.27 70.29 0.58 17.58 15 15 O -0.55 -19.17 17.20 19.88 0.34 -18.83 15 16 O -0.49 -10.20 12.69 -56.44 -0.72 -10.92 15 17 C 0.12 4.44 10.76 85.19 0.92 5.36 15 18 N -0.49 -23.14 10.35 -306.28 -3.17 -26.31 15 19 C 0.17 8.97 8.54 85.34 0.73 9.70 15 20 O -0.18 -10.55 8.88 -16.69 -0.15 -10.70 15 21 H 0.30 13.39 8.29 -92.71 -0.77 12.62 15 22 H 0.15 6.60 8.06 -2.91 -0.02 6.58 15 23 H 0.15 5.64 7.73 -2.91 -0.02 5.61 15 24 H 0.44 4.20 9.11 -74.06 -0.67 3.52 15 25 H 0.20 5.79 7.60 -2.91 -0.02 5.77 15 Total: -1.00 -65.76 242.51 2.48 -63.28 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.59 Total: 18.77 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.30 Total: -10.89 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -2.91 Total: -65.52 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.52 Total: -40.44 kcal Atomic # 14 Polarization: 32.78 SS G_CDS: 2.03 Total: 34.81 kcal Total: -65.76 2.48 -63.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244881.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.483 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds