Wall clock time and date at job start Mon Mar 30 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47120 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47133 * 119.99514 * 3 2 1 6 6 H 1.48498 * 109.47020 * 239.99741 * 3 2 1 7 7 C 1.39881 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 154.38843 * 7 2 1 9 9 C 1.41416 * 120.00194 * 334.38549 * 7 2 1 10 10 C 1.41096 * 120.60461 * 334.70689 * 9 7 2 11 11 N 1.31125 * 121.29995 * 179.70924 * 10 9 7 12 12 C 1.32907 * 122.13574 * 0.56170 * 11 10 9 13 13 O 1.34648 * 132.57529 * 179.73444 * 12 11 10 14 14 C 1.34947 * 111.06108 * 180.02562 * 13 12 11 15 15 C 1.46788 * 125.09948 * 180.02562 * 14 13 12 16 16 O 1.21576 * 119.99858 * 179.97438 * 15 14 13 17 17 O 1.34861 * 120.00310 * 359.97438 * 15 14 13 18 18 C 1.35857 * 109.79840 * 359.97438 * 14 13 12 19 19 C 1.41160 * 120.11200 * 359.73238 * 12 11 10 20 20 C 1.39288 * 119.85981 * 359.97438 * 19 12 11 21 21 H 0.96994 * 119.99802 * 174.33529 * 1 2 3 22 22 H 1.08002 * 119.34905 * 0.02562 * 10 9 7 23 23 H 0.96696 * 117.00122 * 179.97438 * 17 15 14 24 24 H 1.07998 * 127.01825 * 180.02562 * 18 14 13 25 25 H 1.07996 * 121.10262 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6965 1.2126 6 1 3.0966 1.6963 -1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0086 -1.2576 -0.4037 9 6 1.4054 -2.3757 0.5305 10 6 0.3893 -2.2787 1.5046 11 7 -0.1828 -3.3490 2.0011 12 6 0.1663 -4.5755 1.6266 13 8 -0.2658 -5.7973 1.9921 14 6 0.3995 -6.7656 1.3281 15 6 0.1742 -8.2071 1.4893 16 8 0.8286 -9.0008 0.8413 17 8 -0.7585 -8.6511 2.3562 18 6 1.3081 -6.2061 0.4873 19 6 1.1791 -4.7597 0.6607 20 6 1.8121 -3.6529 0.0999 21 1 -0.4849 -0.8359 -0.0829 22 1 0.0730 -1.3035 1.8443 23 1 -0.8710 -9.6089 2.4276 24 1 1.9869 -6.7238 -0.1743 25 1 2.5891 -3.7705 -0.6409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251180.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:53 Heat of formation + Delta-G solvation = -61.906987 kcal Electronic energy + Delta-G solvation = -15166.672533 eV Core-core repulsion = 12304.460944 eV Total energy + Delta-G solvation = -2862.211589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72171 -39.86306 -37.89270 -36.17848 -34.31341 -32.62120 -30.41063 -29.25174 -25.69529 -24.80177 -22.10460 -21.47927 -20.42776 -18.82856 -17.90778 -17.29890 -17.13897 -16.18670 -15.01233 -14.96505 -14.59459 -14.16396 -13.59847 -13.01843 -12.71314 -12.33691 -12.08911 -11.82200 -11.72399 -11.63097 -11.28290 -10.96571 -10.55452 -10.23365 -9.99554 -9.35510 -8.45364 -8.10030 -7.92022 -7.53334 -4.77453 0.86940 2.30162 2.38339 2.54812 3.02576 3.08730 3.23286 3.23917 3.38135 3.81286 4.22934 5.05912 5.08944 5.23408 5.57336 5.65817 5.98401 6.08234 6.29193 6.33853 6.69791 6.83503 7.10502 7.24116 7.43497 7.60250 7.72928 7.90456 8.18574 8.37669 8.91396 9.70634 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073856 B = 0.005642 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.027378 B = 4961.196068 C = 5239.802322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.036 3.964 3 Si 1.070 2.930 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.086 0.914 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.459 5.459 12 C 0.149 3.851 13 O -0.176 6.176 14 C -0.034 4.034 15 C 0.575 3.425 16 O -0.503 6.503 17 O -0.502 6.502 18 C -0.101 4.101 19 C -0.138 4.138 20 C -0.174 4.174 21 H 0.299 0.701 22 H 0.160 0.840 23 H 0.414 0.586 24 H 0.162 0.838 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -6.002 0.921 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.187 4.187 3 Si 0.892 3.108 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.104 0.896 9 C 0.026 3.974 10 C -0.085 4.085 11 N -0.174 5.174 12 C -0.022 4.022 13 O -0.076 6.076 14 C -0.083 4.083 15 C 0.420 3.580 16 O -0.393 6.393 17 O -0.313 6.313 18 C -0.122 4.122 19 C -0.141 4.141 20 C -0.200 4.200 21 H 0.112 0.888 22 H 0.176 0.824 23 H 0.272 0.728 24 H 0.179 0.821 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.534 -4.242 1.597 4.564 hybrid contribution 0.782 -2.510 -0.733 2.730 sum 1.316 -6.752 0.863 6.933 Atomic orbital electron populations 1.70556 1.08170 1.34247 1.27613 1.27264 0.95580 1.04817 0.91023 0.83544 0.75652 0.73233 0.78338 1.19512 1.19606 1.19829 1.20518 1.03346 0.93261 1.35427 0.89581 1.18490 0.93117 0.93400 0.92353 1.23038 0.96540 0.93955 0.94945 1.65915 1.28555 0.94979 1.27954 1.19156 0.98040 0.84653 1.00367 1.83770 1.54771 1.12237 1.56861 1.20058 1.00699 0.85752 1.01769 1.19057 0.76594 0.86126 0.76209 1.90958 1.47666 1.54854 1.45822 1.84724 1.55395 1.31976 1.59225 1.22635 0.98182 0.92764 0.98588 1.20267 1.00299 0.92724 1.00838 1.20664 1.05470 0.89755 1.04087 0.88764 0.82355 0.72777 0.82079 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.88 12.33 55.54 0.68 -18.19 15 2 C 0.04 0.82 4.94 -17.34 -0.09 0.73 15 3 Si 1.07 19.20 30.00 -169.99 -5.10 14.10 15 4 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 6 H -0.27 -4.66 7.11 56.52 0.40 -4.25 15 7 C -0.50 -11.82 9.01 -37.76 -0.34 -12.16 15 8 H 0.09 1.96 7.96 -52.49 -0.42 1.54 15 9 C 0.03 0.77 5.31 -106.64 -0.57 0.20 15 10 C 0.08 2.06 9.13 -16.77 -0.15 1.91 15 11 N -0.46 -11.53 10.35 -12.24 -0.13 -11.65 15 12 C 0.15 3.63 8.57 -15.98 -0.14 3.49 15 13 O -0.18 -3.95 10.58 2.11 0.02 -3.93 15 14 C -0.03 -0.65 7.10 -36.98 -0.26 -0.91 15 15 C 0.58 9.29 8.31 34.19 0.28 9.57 15 16 O -0.50 -8.54 17.61 -19.32 -0.34 -8.88 15 17 O -0.50 -6.48 13.44 -42.80 -0.58 -7.06 15 18 C -0.10 -1.95 10.81 -37.22 -0.40 -2.35 15 19 C -0.14 -3.15 6.38 -105.18 -0.67 -3.82 15 20 C -0.17 -4.03 10.00 -38.23 -0.38 -4.41 15 21 H 0.30 7.44 6.69 -40.82 -0.27 7.17 15 22 H 0.16 3.82 6.47 -52.49 -0.34 3.48 15 23 H 0.41 2.77 9.11 45.56 0.42 3.19 15 24 H 0.16 2.64 8.06 -52.49 -0.42 2.22 15 25 H 0.12 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 241.53 15.07 3.64 3.64 Total: -1.00 -28.36 241.53 -4.77 -33.13 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.26 Total: 6.59 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.72 Total: -7.75 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 0.56 Total: -29.85 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.89 Total: -19.86 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.10 Total: 14.10 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.36 -4.77 -33.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251180.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.779 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds