Wall clock time and date at job start Mon Mar 30 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47120 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47133 * 119.99514 * 3 2 1 6 6 H 1.48498 * 109.47020 * 239.99741 * 3 2 1 7 7 C 1.39881 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 154.38843 * 7 2 1 9 9 C 1.41416 * 120.00194 * 334.38549 * 7 2 1 10 10 C 1.41096 * 120.60461 * 334.70689 * 9 7 2 11 11 N 1.31125 * 121.29995 * 179.70924 * 10 9 7 12 12 C 1.32907 * 122.13574 * 0.56170 * 11 10 9 13 13 O 1.34648 * 132.57529 * 179.73444 * 12 11 10 14 14 C 1.34947 * 111.06108 * 180.02562 * 13 12 11 15 15 C 1.46788 * 125.09948 * 180.02562 * 14 13 12 16 16 O 1.21576 * 119.99858 * 179.97438 * 15 14 13 17 17 O 1.34861 * 120.00310 * 359.97438 * 15 14 13 18 18 C 1.35857 * 109.79840 * 359.97438 * 14 13 12 19 19 C 1.41160 * 120.11200 * 359.73238 * 12 11 10 20 20 C 1.39288 * 119.85981 * 359.97438 * 19 12 11 21 21 H 0.96994 * 119.99802 * 174.33529 * 1 2 3 22 22 H 1.08002 * 119.34905 * 0.02562 * 10 9 7 23 23 H 0.96696 * 117.00122 * 179.97438 * 17 15 14 24 24 H 1.07998 * 127.01825 * 180.02562 * 18 14 13 25 25 H 1.07996 * 121.10262 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0965 1.6965 1.2126 6 1 3.0966 1.6963 -1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0086 -1.2576 -0.4037 9 6 1.4054 -2.3757 0.5305 10 6 0.3893 -2.2787 1.5046 11 7 -0.1828 -3.3490 2.0011 12 6 0.1663 -4.5755 1.6266 13 8 -0.2658 -5.7973 1.9921 14 6 0.3995 -6.7656 1.3281 15 6 0.1742 -8.2071 1.4893 16 8 0.8286 -9.0008 0.8413 17 8 -0.7585 -8.6511 2.3562 18 6 1.3081 -6.2061 0.4873 19 6 1.1791 -4.7597 0.6607 20 6 1.8121 -3.6529 0.0999 21 1 -0.4849 -0.8359 -0.0829 22 1 0.0730 -1.3035 1.8443 23 1 -0.8710 -9.6089 2.4276 24 1 1.9869 -6.7238 -0.1743 25 1 2.5891 -3.7705 -0.6409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251180.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:53 Heat of formation + Delta-G solvation = -82.090908 kcal Electronic energy + Delta-G solvation = -15167.547773 eV Core-core repulsion = 12304.460944 eV Total energy + Delta-G solvation = -2863.086830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.39102 -41.14888 -39.67902 -37.35735 -36.09932 -34.33743 -32.16900 -30.91878 -27.47606 -26.37274 -23.84301 -23.13545 -22.00038 -20.39595 -19.40654 -18.88527 -18.65228 -17.72130 -16.74201 -16.43253 -16.30821 -15.64517 -14.94955 -14.63325 -14.34986 -14.05894 -13.82792 -13.58899 -13.50404 -12.84353 -12.78610 -12.26458 -12.00083 -11.81674 -11.70046 -11.03657 -10.30287 -9.89484 -9.66946 -9.34490 -6.62865 -0.67134 0.49108 0.75543 1.06429 1.57385 1.64532 1.72990 1.86679 1.97269 2.32224 2.49688 3.22385 3.59102 3.63586 3.96626 4.07205 4.25470 4.34207 4.67276 4.93415 5.11171 5.25202 5.31383 5.40291 5.65244 5.77287 6.01148 6.34631 6.59095 6.76919 7.07260 7.86703 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073856 B = 0.005642 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.027378 B = 4961.196068 C = 5239.802322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.006 3.994 3 Si 1.121 2.879 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.254 1.254 7 C -0.515 4.515 8 H 0.094 0.906 9 C 0.012 3.988 10 C 0.064 3.936 11 N -0.476 5.476 12 C 0.119 3.881 13 O -0.189 6.189 14 C -0.031 4.031 15 C 0.590 3.410 16 O -0.506 6.506 17 O -0.495 6.495 18 C -0.096 4.096 19 C -0.145 4.145 20 C -0.176 4.176 21 H 0.284 0.716 22 H 0.153 0.847 23 H 0.443 0.557 24 H 0.195 0.805 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -7.012 0.522 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.211 4.211 3 Si 0.937 3.063 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.543 4.543 8 H 0.112 0.888 9 C 0.007 3.993 10 C -0.103 4.103 11 N -0.192 5.192 12 C -0.053 4.053 13 O -0.090 6.090 14 C -0.079 4.079 15 C 0.434 3.566 16 O -0.397 6.397 17 O -0.310 6.310 18 C -0.117 4.117 19 C -0.148 4.148 20 C -0.203 4.203 21 H 0.096 0.904 22 H 0.170 0.830 23 H 0.307 0.693 24 H 0.212 0.788 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.523 -5.305 1.206 5.650 hybrid contribution 0.416 -2.414 -0.580 2.518 sum 1.939 -7.720 0.627 7.984 Atomic orbital electron populations 1.70661 1.09047 1.33311 1.29292 1.28654 0.95450 1.07764 0.89277 0.82935 0.74717 0.69154 0.79493 1.19751 1.18414 1.17805 1.20778 1.03774 0.93754 1.35965 0.88774 1.18758 0.93397 0.94451 0.92648 1.22918 0.97677 0.93735 0.96002 1.65805 1.29109 0.95717 1.28529 1.19400 0.99273 0.84983 1.01637 1.83764 1.55554 1.12045 1.57679 1.20764 0.99679 0.86885 1.00618 1.18503 0.77006 0.84559 0.76538 1.90973 1.48085 1.54450 1.46215 1.84660 1.53772 1.34853 1.57686 1.22918 0.98746 0.90933 0.99068 1.20545 0.99593 0.94504 1.00163 1.20957 1.05603 0.89564 1.04138 0.90365 0.82958 0.69330 0.78779 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.35 12.33 21.82 0.27 -39.08 15 2 C 0.01 0.29 4.94 85.23 0.42 0.71 15 3 Si 1.12 37.68 30.00 68.60 2.06 39.74 15 4 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 5 H -0.26 -8.23 7.11 99.48 0.71 -7.53 15 6 H -0.25 -7.74 7.11 99.48 0.71 -7.04 15 7 C -0.52 -24.54 9.01 23.45 0.21 -24.33 15 8 H 0.09 4.22 7.96 -2.91 -0.02 4.20 15 9 C 0.01 0.62 5.31 -21.17 -0.11 0.51 15 10 C 0.06 3.28 9.13 85.50 0.78 4.06 15 11 N -0.48 -24.67 10.35 -305.74 -3.16 -27.83 15 12 C 0.12 5.85 8.57 85.25 0.73 6.58 15 13 O -0.19 -8.41 10.58 -11.51 -0.12 -8.53 15 14 C -0.03 -1.13 7.10 23.95 0.17 -0.96 15 15 C 0.59 17.30 8.31 70.06 0.58 17.88 15 16 O -0.51 -15.48 17.61 19.59 0.34 -15.13 15 17 O -0.49 -11.14 13.44 -55.96 -0.75 -11.89 15 18 C -0.10 -3.54 10.81 23.80 0.26 -3.28 15 19 C -0.14 -6.53 6.38 -20.23 -0.13 -6.66 15 20 C -0.18 -8.16 10.00 23.15 0.23 -7.93 15 21 H 0.28 14.70 6.69 -92.71 -0.62 14.08 15 22 H 0.15 7.73 6.47 -2.91 -0.02 7.71 15 23 H 0.44 4.16 9.11 -74.06 -0.67 3.49 15 24 H 0.20 5.70 8.06 -2.91 -0.02 5.68 15 25 H 0.13 5.54 8.06 -2.91 -0.02 5.52 15 Total: -1.00 -61.06 241.53 2.51 -58.55 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.74 Total: 17.60 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 3.14 Total: -13.42 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -2.89 Total: -66.91 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.53 Total: -35.55 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.06 Total: 39.74 kcal Total: -61.06 2.51 -58.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251180.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.543 kcal (2) G-P(sol) polarization free energy of solvation -61.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds