Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48505 * 109.47269 * 240.00346 * 3 2 1 5 5 H 1.48502 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47465 * 119.99934 * 3 2 1 7 7 C 1.40369 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99820 * 179.97438 * 7 2 1 9 9 C 1.39758 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.39100 * 125.52904 * 179.97438 * 9 7 2 11 11 C 1.40949 * 106.52308 * 180.02562 * 10 9 7 12 12 C 1.40213 * 134.64383 * 180.02562 * 11 10 9 13 13 C 1.38949 * 118.49510 * 180.02562 * 12 11 10 14 14 C 1.47832 * 119.57093 * 179.97438 * 13 12 11 15 15 O 1.21459 * 120.00428 * 0.02562 * 14 13 12 16 16 O 1.34711 * 119.99584 * 179.97438 * 14 13 12 17 17 N 1.33226 * 120.85224 * 359.97438 * 13 12 11 18 18 C 1.31364 * 122.55998 * 0.02562 * 17 13 12 19 19 C 1.39121 * 120.76998 * 359.95860 * 18 17 13 20 20 O 1.34747 * 133.50738 * 179.72586 * 19 18 17 21 21 H 0.96999 * 119.99908 * 0.02562 * 1 2 3 22 22 H 1.08007 * 126.73992 * 359.97438 * 10 9 7 23 23 H 1.08006 * 120.75453 * 0.02562 * 12 11 10 24 24 H 0.96706 * 117.00217 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.61009 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2126 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0082 -1.2156 -0.0005 8 1 3.0882 -1.2156 -0.0010 9 6 1.3094 -2.4260 -0.0005 10 6 1.8856 -3.6920 -0.0016 11 6 0.8217 -4.6166 -0.0017 12 6 0.7325 -6.0159 -0.0022 13 6 -0.5284 -6.5997 -0.0028 14 6 -0.6502 -8.0730 -0.0038 15 8 0.3480 -8.7650 -0.0036 16 8 -1.8684 -8.6481 -0.0039 17 7 -1.6290 -5.8489 -0.0025 18 6 -1.5890 -4.5359 -0.0021 19 6 -0.3725 -3.8608 -0.0011 20 8 -0.0356 -2.5561 -0.0052 21 1 -0.4850 0.8400 -0.0004 22 1 2.9410 -3.9215 -0.0029 23 1 1.6236 -6.6262 -0.0020 24 1 -1.8976 -9.6147 -0.0042 25 1 -2.5113 -3.9739 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261260941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = -75.678550 kcal Electronic energy + Delta-G solvation = -15175.175970 eV Core-core repulsion = 12312.367202 eV Total energy + Delta-G solvation = -2862.808769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18305 -39.76965 -37.64034 -35.75143 -34.19526 -32.23764 -30.16544 -29.80018 -26.25944 -24.37187 -22.27433 -20.95468 -20.24915 -18.58155 -17.52534 -16.64916 -16.53258 -15.52910 -15.37662 -14.77762 -14.67495 -14.33595 -13.62817 -13.07106 -12.65318 -12.40414 -11.79887 -11.60879 -11.52585 -11.30361 -11.22942 -10.94492 -10.49897 -10.41187 -9.93521 -9.57909 -8.96825 -8.08309 -7.61134 -7.37140 -5.01237 1.30984 1.92188 2.72013 2.78495 2.82391 3.04345 3.33426 3.50856 3.51409 4.11842 4.60486 4.77664 4.97551 5.48144 5.79133 5.86694 6.08860 6.43000 6.48342 6.61040 6.69058 6.78828 7.10036 7.15475 7.40034 7.57137 7.98350 8.08858 8.15672 8.54986 8.72877 9.58928 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073369 B = 0.005747 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.540667 B = 4871.359349 C = 5243.057322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.062 3.938 3 Si 0.934 3.066 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.411 4.411 8 H 0.117 0.883 9 C 0.244 3.756 10 C -0.407 4.407 11 C -0.034 4.034 12 C -0.119 4.119 13 C 0.050 3.950 14 C 0.552 3.448 15 O -0.525 6.525 16 O -0.497 6.497 17 N -0.476 5.476 18 C 0.129 3.871 19 C -0.046 4.046 20 O -0.158 6.158 21 H 0.296 0.704 22 H 0.131 0.869 23 H 0.132 0.868 24 H 0.402 0.598 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -2.003 -0.003 2.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.164 4.164 3 Si 0.756 3.244 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.438 4.438 8 H 0.135 0.865 9 C 0.192 3.808 10 C -0.429 4.429 11 C -0.040 4.040 12 C -0.141 4.141 13 C -0.079 4.079 14 C 0.396 3.604 15 O -0.414 6.414 16 O -0.306 6.306 17 N -0.190 5.190 18 C -0.034 4.034 19 C -0.097 4.097 20 O -0.057 6.057 21 H 0.108 0.892 22 H 0.149 0.851 23 H 0.150 0.850 24 H 0.259 0.741 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.757 -1.917 -0.005 2.600 hybrid contribution 1.220 0.377 0.001 1.276 sum -0.537 -1.540 -0.003 1.631 Atomic orbital electron populations 1.69654 1.07932 1.31388 1.27901 1.26400 0.95243 1.02838 0.91923 0.85905 0.79862 0.77971 0.80684 1.18094 1.19595 1.18100 1.19181 0.95390 0.87195 1.42056 0.86497 1.19714 0.78296 0.94316 0.88494 1.20954 0.97403 0.89977 1.34549 1.18838 0.94459 0.92773 0.97954 1.21131 0.96637 0.93113 1.03253 1.19224 0.90257 0.89358 1.09108 1.20651 0.80232 0.88400 0.71110 1.90841 1.38610 1.64307 1.47670 1.84751 1.32724 1.27735 1.85389 1.67533 1.29813 1.05086 1.16588 1.21311 0.94082 0.88401 0.99562 1.21188 0.96334 0.84342 1.07820 1.84597 1.24018 1.21268 1.75775 0.89223 0.85066 0.85034 0.74109 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.36 11.96 55.57 0.66 -16.70 15 2 C 0.06 1.36 5.50 -17.26 -0.09 1.27 15 3 Si 0.93 15.89 29.56 -169.99 -5.03 10.87 15 4 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 5 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 6 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 7 C -0.41 -9.63 9.31 -38.21 -0.36 -9.99 15 8 H 0.12 2.47 7.85 -52.48 -0.41 2.06 15 9 C 0.24 6.16 6.75 -38.69 -0.26 5.90 15 10 C -0.41 -9.83 10.94 -38.24 -0.42 -10.25 15 11 C -0.03 -0.82 6.23 -106.95 -0.67 -1.49 15 12 C -0.12 -2.61 9.70 -38.58 -0.37 -2.98 15 13 C 0.05 1.07 6.75 -83.07 -0.56 0.51 15 14 C 0.55 10.33 8.31 34.66 0.29 10.62 15 15 O -0.52 -10.42 17.09 -19.23 -0.33 -10.75 15 16 O -0.50 -7.55 13.24 -40.52 -0.54 -8.09 15 17 N -0.48 -10.20 10.06 -9.77 -0.10 -10.30 15 18 C 0.13 2.76 11.22 -17.42 -0.20 2.57 15 19 C -0.05 -1.10 7.43 -38.08 -0.28 -1.39 15 20 O -0.16 -4.09 8.88 2.15 0.02 -4.07 15 21 H 0.30 6.11 8.29 -40.82 -0.34 5.77 15 22 H 0.13 2.91 8.06 -52.48 -0.42 2.49 15 23 H 0.13 2.70 7.64 -52.48 -0.40 2.29 15 24 H 0.40 3.70 9.11 45.56 0.42 4.12 15 25 H 0.15 2.83 8.06 -52.49 -0.42 2.41 15 LS Contribution 243.27 15.07 3.67 3.67 Total: -1.00 -28.44 243.27 -4.94 -33.38 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -0.38 Total: 7.23 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.92 Total: -5.23 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.57 Total: -27.00 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.85 Total: -22.91 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -5.03 Total: 10.87 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.44 -4.94 -33.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.297 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds