Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48505 * 109.47269 * 240.00346 * 3 2 1 5 5 H 1.48502 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47465 * 119.99934 * 3 2 1 7 7 C 1.40369 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99820 * 179.97438 * 7 2 1 9 9 C 1.39758 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.39100 * 125.52904 * 179.97438 * 9 7 2 11 11 C 1.40949 * 106.52308 * 180.02562 * 10 9 7 12 12 C 1.40213 * 134.64383 * 180.02562 * 11 10 9 13 13 C 1.38949 * 118.49510 * 180.02562 * 12 11 10 14 14 C 1.47832 * 119.57093 * 179.97438 * 13 12 11 15 15 O 1.21459 * 120.00428 * 0.02562 * 14 13 12 16 16 O 1.34711 * 119.99584 * 179.97438 * 14 13 12 17 17 N 1.33226 * 120.85224 * 359.97438 * 13 12 11 18 18 C 1.31364 * 122.55998 * 0.02562 * 17 13 12 19 19 C 1.39121 * 120.76998 * 359.95860 * 18 17 13 20 20 O 1.34747 * 133.50738 * 179.72586 * 19 18 17 21 21 H 0.96999 * 119.99908 * 0.02562 * 1 2 3 22 22 H 1.08007 * 126.73992 * 359.97438 * 10 9 7 23 23 H 1.08006 * 120.75453 * 0.02562 * 12 11 10 24 24 H 0.96706 * 117.00217 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.61009 * 179.97438 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2126 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0082 -1.2156 -0.0005 8 1 3.0882 -1.2156 -0.0010 9 6 1.3094 -2.4260 -0.0005 10 6 1.8856 -3.6920 -0.0016 11 6 0.8217 -4.6166 -0.0017 12 6 0.7325 -6.0159 -0.0022 13 6 -0.5284 -6.5997 -0.0028 14 6 -0.6502 -8.0730 -0.0038 15 8 0.3480 -8.7650 -0.0036 16 8 -1.8684 -8.6481 -0.0039 17 7 -1.6290 -5.8489 -0.0025 18 6 -1.5890 -4.5359 -0.0021 19 6 -0.3725 -3.8608 -0.0011 20 8 -0.0356 -2.5561 -0.0052 21 1 -0.4850 0.8400 -0.0004 22 1 2.9410 -3.9215 -0.0029 23 1 1.6236 -6.6262 -0.0020 24 1 -1.8976 -9.6147 -0.0042 25 1 -2.5113 -3.9739 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = -94.599097 kcal Electronic energy + Delta-G solvation = -15175.996427 eV Core-core repulsion = 12312.367202 eV Total energy + Delta-G solvation = -2863.629225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.97183 -41.25986 -39.32358 -37.12731 -35.91056 -34.02219 -31.87761 -31.57600 -28.02050 -25.99000 -23.99719 -22.57393 -22.03548 -20.26346 -19.02349 -18.35195 -18.16114 -17.16773 -16.94091 -16.51631 -16.33110 -15.90834 -15.30310 -14.55938 -14.16763 -14.09776 -13.57823 -13.21856 -13.04827 -12.96706 -12.60769 -12.59343 -11.98447 -11.92920 -11.54556 -11.31206 -10.69754 -9.86342 -9.40724 -9.02830 -6.81909 -0.36716 0.18046 1.26305 1.38483 1.47454 1.55640 1.87313 1.90989 2.09682 2.36806 2.87819 3.00898 3.38069 3.79958 4.16237 4.19820 4.38935 4.73606 4.79944 4.89431 5.01198 5.31577 5.41445 5.44405 5.62780 5.81699 6.22637 6.30238 6.69397 6.83943 7.09108 7.96511 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.073369 B = 0.005747 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.540667 B = 4871.359349 C = 5243.057322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.022 3.978 3 Si 1.013 2.987 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.430 4.430 8 H 0.133 0.867 9 C 0.213 3.787 10 C -0.428 4.428 11 C -0.049 4.049 12 C -0.126 4.126 13 C 0.046 3.954 14 C 0.562 3.438 15 O -0.537 6.537 16 O -0.488 6.488 17 N -0.474 5.474 18 C 0.136 3.864 19 C -0.077 4.077 20 O -0.178 6.178 21 H 0.307 0.693 22 H 0.141 0.859 23 H 0.142 0.858 24 H 0.431 0.569 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -1.785 -0.003 1.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.201 4.201 3 Si 0.830 3.170 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.173 1.173 7 C -0.456 4.456 8 H 0.151 0.849 9 C 0.161 3.839 10 C -0.450 4.450 11 C -0.055 4.055 12 C -0.148 4.148 13 C -0.084 4.084 14 C 0.406 3.594 15 O -0.428 6.428 16 O -0.300 6.300 17 N -0.189 5.189 18 C -0.027 4.027 19 C -0.127 4.127 20 O -0.077 6.077 21 H 0.118 0.882 22 H 0.159 0.841 23 H 0.160 0.840 24 H 0.293 0.707 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.868 -1.760 -0.005 2.566 hybrid contribution 1.144 0.190 0.001 1.160 sum -0.724 -1.570 -0.004 1.729 Atomic orbital electron populations 1.69710 1.09694 1.33086 1.27893 1.27459 0.95927 1.06143 0.90576 0.84762 0.78430 0.72840 0.81001 1.17324 1.18714 1.17333 1.19724 0.96407 0.87629 1.41869 0.84923 1.20234 0.78478 0.95486 0.89668 1.21161 0.98065 0.90086 1.35671 1.19081 0.94506 0.93718 0.98195 1.21267 0.97666 0.92442 1.03415 1.19655 0.89936 0.91079 1.07694 1.20121 0.80966 0.87307 0.70983 1.90845 1.39347 1.64292 1.48279 1.84668 1.30439 1.30453 1.84418 1.67657 1.29752 1.04935 1.16546 1.21785 0.94341 0.88534 0.98006 1.21607 0.97447 0.84050 1.09596 1.84541 1.24415 1.22214 1.76555 0.88172 0.84072 0.83977 0.70706 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.53 11.96 21.90 0.26 -36.27 15 2 C 0.02 0.94 5.50 85.39 0.47 1.41 15 3 Si 1.01 31.37 29.56 68.60 2.03 33.40 15 4 H -0.25 -7.41 7.11 99.48 0.71 -6.70 15 5 H -0.26 -7.73 7.11 99.48 0.71 -7.02 15 6 H -0.25 -7.41 7.11 99.48 0.71 -6.70 15 7 C -0.43 -20.37 9.31 23.16 0.22 -20.16 15 8 H 0.13 5.61 7.85 -2.91 -0.02 5.59 15 9 C 0.21 11.08 6.75 22.84 0.15 11.23 15 10 C -0.43 -21.29 10.94 23.14 0.25 -21.04 15 11 C -0.05 -2.39 6.23 -21.37 -0.13 -2.52 15 12 C -0.13 -5.52 9.70 22.92 0.22 -5.29 15 13 C 0.05 1.92 6.75 41.64 0.28 2.20 15 14 C 0.56 19.90 8.31 70.36 0.58 20.48 15 15 O -0.54 -20.29 17.09 19.97 0.34 -19.95 15 16 O -0.49 -13.34 13.24 -56.20 -0.74 -14.08 15 17 N -0.47 -19.77 10.06 -184.84 -1.86 -21.63 15 18 C 0.14 5.76 11.22 84.97 0.95 6.71 15 19 C -0.08 -3.76 7.43 23.24 0.17 -3.59 15 20 O -0.18 -9.47 8.88 -15.23 -0.14 -9.61 15 21 H 0.31 12.57 8.29 -92.71 -0.77 11.80 15 22 H 0.14 6.44 8.06 -2.91 -0.02 6.42 15 23 H 0.14 5.80 7.64 -2.91 -0.02 5.78 15 24 H 0.43 6.36 9.11 -74.05 -0.67 5.69 15 25 H 0.18 6.48 8.06 -2.91 -0.02 6.46 15 Total: -1.00 -61.06 243.27 3.65 -57.41 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.59 Total: 21.30 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.17 Total: -10.56 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -1.60 Total: -57.90 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.54 Total: -43.64 kcal Atomic # 14 Polarization: 31.37 SS G_CDS: 2.03 Total: 33.40 kcal Total: -61.06 3.65 -57.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.192 kcal (2) G-P(sol) polarization free energy of solvation -61.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds