Wall clock time and date at job start Mon Mar 30 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86801 * 120.00107 * 2 1 4 4 H 1.48503 * 109.47330 * 239.99715 * 3 2 1 5 5 H 1.48502 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47449 * 119.99714 * 3 2 1 7 7 C 1.39952 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00627 * 180.02562 * 7 2 1 9 9 C 1.41308 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.40484 * 119.70896 * 180.02562 * 9 7 2 11 11 C 1.39266 * 118.41180 * 180.02562 * 10 9 7 12 12 C 1.46111 * 135.23432 * 180.02562 * 11 10 9 13 13 C 1.35885 * 105.99173 * 179.97438 * 12 11 10 14 14 C 1.47023 * 125.08731 * 180.02562 * 13 12 11 15 15 O 1.21550 * 120.00185 * 359.97438 * 14 13 12 16 16 O 1.34834 * 119.99573 * 179.97438 * 14 13 12 17 17 O 1.34904 * 109.82204 * 0.21523 * 13 12 11 18 18 C 1.34459 * 110.99637 * 359.62528 * 17 13 12 19 19 C 1.39588 * 133.83680 * 180.02562 * 18 17 13 20 20 N 1.31168 * 120.82810 * 180.21694 * 19 18 17 21 21 H 0.97010 * 119.99926 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.79818 * 359.97418 * 10 9 7 23 23 H 1.08002 * 126.99860 * 359.96923 * 12 11 10 24 24 H 0.96707 * 116.99791 * 179.97438 * 16 14 13 25 25 H 1.08001 * 119.58776 * 0.29324 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0957 1.6965 1.2125 7 6 2.0078 -1.2120 0.0005 8 1 3.0878 -1.2121 0.0010 9 6 1.3012 -2.4357 0.0005 10 6 2.0098 -3.6488 0.0016 11 6 1.2863 -4.8388 0.0011 12 6 1.6266 -6.2597 0.0022 13 6 0.4434 -6.9280 0.0013 14 6 0.2992 -8.3911 0.0025 15 8 1.2872 -9.0992 0.0040 16 8 -0.9290 -8.9474 0.0019 17 8 -0.5790 -6.0480 -0.0051 18 6 -0.1253 -4.7822 -0.0004 19 6 -0.7469 -3.5324 -0.0030 20 7 -0.0376 -2.4290 -0.0011 21 1 -0.4850 0.8401 -0.0004 22 1 3.0898 -3.6584 0.0021 23 1 2.6168 -6.6909 0.0035 24 1 -0.9734 -9.9135 0.0024 25 1 -1.8252 -3.4731 -0.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261362.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:52 Heat of formation + Delta-G solvation = -51.738879 kcal Electronic energy + Delta-G solvation = -15125.336331 eV Core-core repulsion = 12263.565664 eV Total energy + Delta-G solvation = -2861.770667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58182 -39.79931 -37.54867 -36.13617 -33.63662 -32.26209 -29.92469 -29.64386 -25.80972 -24.82098 -21.82849 -21.36570 -20.27426 -18.66470 -17.62839 -16.83980 -16.63908 -16.04020 -15.47166 -14.79275 -14.35076 -14.09312 -13.40240 -13.02679 -12.61040 -12.41982 -12.13414 -11.62424 -11.29509 -11.24472 -10.97164 -10.91436 -10.67232 -10.20072 -9.67705 -9.46497 -8.13597 -8.04505 -7.57566 -6.67572 -4.65717 1.01990 2.43365 2.65852 2.72700 3.00040 3.01948 3.05672 3.37070 3.69096 3.82151 4.49326 5.25238 5.43425 5.56457 5.67967 5.71326 5.95913 6.33577 6.34927 6.60038 6.81092 7.01241 7.09323 7.16389 7.40329 7.72470 7.93103 8.03965 8.39117 8.64976 9.66341 10.09630 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.074820 B = 0.005622 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.142516 B = 4979.065164 C = 5343.365126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.089 0.911 9 C 0.239 3.761 10 C -0.249 4.249 11 C -0.076 4.076 12 C -0.116 4.116 13 C -0.030 4.030 14 C 0.572 3.428 15 O -0.504 6.504 16 O -0.503 6.503 17 O -0.179 6.179 18 C -0.109 4.109 19 C 0.156 3.844 20 N -0.426 5.426 21 H 0.278 0.722 22 H 0.110 0.890 23 H 0.158 0.842 24 H 0.413 0.587 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -6.779 0.000 6.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.160 4.160 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.452 4.452 8 H 0.107 0.893 9 C 0.119 3.881 10 C -0.273 4.273 11 C -0.081 4.081 12 C -0.137 4.137 13 C -0.081 4.081 14 C 0.417 3.583 15 O -0.395 6.395 16 O -0.314 6.314 17 O -0.081 6.081 18 C -0.159 4.159 19 C -0.018 4.018 20 N -0.138 5.138 21 H 0.090 0.910 22 H 0.128 0.872 23 H 0.176 0.824 24 H 0.271 0.729 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.229 -5.577 -0.002 5.711 hybrid contribution 0.921 -0.811 0.001 1.227 sum -0.309 -6.387 -0.001 6.395 Atomic orbital electron populations 1.70076 1.07263 1.28612 1.27955 1.26114 0.95039 1.01447 0.93365 0.86265 0.80023 0.79846 0.80077 1.18757 1.20051 1.18752 1.19560 0.94586 0.88966 1.42076 0.89266 1.18459 0.87476 0.92109 0.90061 1.21098 0.98841 0.90042 1.17352 1.19662 0.93380 0.92453 1.02651 1.22593 0.97219 0.91983 1.01887 1.20230 0.87678 0.86820 1.13335 1.19240 0.80813 0.86115 0.72093 1.90943 1.39465 1.61578 1.47476 1.84716 1.31837 1.29282 1.85573 1.83837 1.32966 1.14121 1.77147 1.21050 0.93645 0.83910 1.17312 1.22100 0.99721 0.82825 0.97125 1.68766 1.08044 1.23408 1.13575 0.91034 0.87181 0.82428 0.72893 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.03 11.45 55.55 0.64 -17.40 15 2 C 0.07 1.59 5.49 -17.35 -0.10 1.49 15 3 Si 0.91 17.58 29.56 -169.99 -5.02 12.56 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.42 -10.68 9.13 -37.77 -0.34 -11.03 15 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 15 9 C 0.24 6.25 6.56 -84.96 -0.56 5.69 15 10 C -0.25 -5.99 9.91 -38.35 -0.38 -6.37 15 11 C -0.08 -1.74 6.43 -105.20 -0.68 -2.41 15 12 C -0.12 -2.29 10.81 -37.27 -0.40 -2.69 15 13 C -0.03 -0.57 7.11 -36.87 -0.26 -0.84 15 14 C 0.57 9.25 8.32 34.29 0.29 9.54 15 15 O -0.50 -8.69 17.61 -19.30 -0.34 -9.03 15 16 O -0.50 -6.39 13.44 -42.68 -0.57 -6.97 15 17 O -0.18 -3.81 10.58 2.85 0.03 -3.78 15 18 C -0.11 -2.50 7.47 -37.92 -0.28 -2.78 15 19 C 0.16 3.63 11.23 -17.33 -0.19 3.44 15 20 N -0.43 -11.14 7.79 -10.97 -0.09 -11.23 15 21 H 0.28 6.31 8.30 -40.82 -0.34 5.98 15 22 H 0.11 2.42 8.06 -52.49 -0.42 2.00 15 23 H 0.16 2.69 8.06 -52.49 -0.42 2.27 15 24 H 0.41 2.73 9.11 45.56 0.42 3.15 15 25 H 0.14 2.79 8.06 -52.49 -0.42 2.37 15 LS Contribution 243.64 15.07 3.67 3.67 Total: -1.00 -29.67 243.64 -5.00 -34.66 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -0.40 Total: 3.47 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.91 Total: -5.96 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: 0.55 Total: -28.62 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.88 Total: -19.77 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.56 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.67 -5.00 -34.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261362.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.076 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds