Wall clock time and date at job start Mon Mar 30 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47903 * 110.99972 * 2 1 4 4 C 1.54608 * 102.62875 * 149.11978 * 3 2 1 5 5 C 1.51567 * 102.83602 * 334.45590 * 4 3 2 6 6 C 1.39009 * 107.95110 * 15.94346 * 5 4 3 7 7 C 1.39355 * 119.09270 * 180.42530 * 6 5 4 8 8 C 1.37960 * 120.19589 * 359.79306 * 7 6 5 9 9 C 1.38258 * 120.26436 * 359.97438 * 8 7 6 10 10 C 1.37879 * 131.56636 * 196.34206 * 5 4 3 11 11 C 1.50690 * 119.96024 * 359.60286 * 10 5 4 12 12 H 1.09003 * 109.47525 * 325.23112 * 11 10 5 13 13 N 1.46899 * 109.47338 * 205.23491 * 11 10 5 14 14 C 1.50697 * 109.47139 * 85.23497 * 11 10 5 15 15 H 1.08001 * 120.00159 * 0.02562 * 14 11 10 16 16 C 1.37882 * 120.00301 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99699 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00270 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47138 * 60.00005 * 18 16 14 20 20 H 1.48502 * 109.47000 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47241 * 300.00101 * 18 16 14 22 22 H 1.09003 * 109.47636 * 300.02989 * 1 2 3 23 23 H 1.09001 * 109.47195 * 60.02500 * 1 2 3 24 24 H 1.09004 * 109.47478 * 180.02562 * 1 2 3 25 25 H 1.09001 * 110.78259 * 30.83807 * 3 2 1 26 26 H 1.09007 * 110.77738 * 267.39978 * 3 2 1 27 27 H 1.08999 * 110.73765 * 216.11890 * 4 3 2 28 28 H 1.09006 * 110.73767 * 92.79439 * 4 3 2 29 29 H 1.08000 * 119.90360 * 179.77460 * 7 6 5 30 30 H 1.08007 * 119.86355 * 180.02562 * 8 7 6 31 31 H 1.08002 * 120.05433 * 180.10022 * 9 8 7 32 32 H 1.00904 * 111.00538 * 176.04842 * 13 11 10 33 33 H 1.00902 * 110.99650 * 299.99883 * 13 11 10 34 34 H 0.97004 * 119.99959 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.3290 1.2324 0.7743 5 6 3.0806 0.0129 1.6395 6 6 1.9708 -0.6532 1.1326 7 6 1.5296 -1.8138 1.7653 8 6 2.1920 -2.2927 2.8767 9 6 3.2977 -1.6255 3.3703 10 6 3.7374 -0.4685 2.7521 11 6 4.9387 0.2635 3.2923 12 1 5.5020 0.6970 2.4659 13 7 5.7946 -0.6764 4.0285 14 6 4.4833 1.3604 4.2199 15 1 3.4293 1.5120 4.4005 16 6 5.4122 2.1698 4.8388 17 7 6.6956 1.9849 4.6193 18 14 4.8477 3.5300 5.9880 19 1 4.0794 2.9400 7.1136 20 1 6.0315 4.2513 6.5205 21 1 3.9833 4.4804 5.2432 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8902 24 1 -0.3634 -1.0277 0.0005 25 1 1.3207 2.0554 0.5224 26 1 2.1808 1.7252 -1.0181 27 1 3.5167 2.1113 1.3909 28 1 4.1575 1.0566 0.0882 29 1 0.6665 -2.3397 1.3847 30 1 1.8457 -3.1930 3.3627 31 1 3.8146 -2.0044 4.2396 32 1 6.6389 -0.2241 4.3459 33 1 5.2949 -1.0920 4.8003 34 1 7.3491 2.5546 5.0544 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:49 Heat of formation + Delta-G solvation = 33.547456 kcal Electronic energy + Delta-G solvation = -16300.845056 eV Core-core repulsion = 13812.157533 eV Total energy + Delta-G solvation = -2488.687523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16749 -36.67236 -34.40015 -32.24021 -31.22179 -28.70183 -28.32322 -25.98715 -25.25187 -22.94214 -21.70463 -20.65186 -18.99359 -16.51578 -16.14912 -15.63560 -15.08792 -14.79481 -14.70907 -14.02881 -13.38576 -12.98492 -12.75370 -12.62302 -12.20376 -11.94176 -11.53752 -11.50740 -11.22820 -11.10071 -11.01177 -10.95928 -10.53556 -10.46517 -10.09457 -9.51547 -9.29437 -8.67840 -7.83068 -7.18818 -7.18611 -6.09691 -4.26705 2.05941 2.17660 3.21676 3.27204 3.30158 4.04243 4.29521 4.56227 5.05299 5.09523 5.13729 5.38851 5.42548 5.59226 5.60370 5.71850 5.85762 5.90929 6.07070 6.15184 6.20426 6.37901 6.49479 6.69535 6.73499 6.93479 7.11545 7.18140 7.29579 7.45085 7.72737 7.80454 7.85563 8.10444 8.67313 8.93371 9.12045 9.44951 10.87385 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027870 B = 0.008470 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.428360 B = 3304.853053 C = 3762.118386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.481 5.481 3 C 0.045 3.955 4 C -0.080 4.080 5 C -0.134 4.134 6 C 0.079 3.921 7 C -0.162 4.162 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.009 3.991 11 C 0.241 3.759 12 H 0.048 0.952 13 N -0.851 5.851 14 C -0.540 4.540 15 H 0.054 0.946 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.355 0.645 33 H 0.311 0.689 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -2.876 -5.618 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.196 5.196 3 C -0.081 4.081 4 C -0.118 4.118 5 C -0.137 4.137 6 C -0.018 4.018 7 C -0.182 4.182 8 C -0.124 4.124 9 C -0.151 4.151 10 C 0.007 3.993 11 C 0.131 3.869 12 H 0.066 0.934 13 N -0.381 5.381 14 C -0.580 4.580 15 H 0.072 0.928 16 C -0.136 4.136 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.171 0.829 33 H 0.121 0.879 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.630 -3.416 -6.803 11.508 hybrid contribution -0.739 1.808 2.054 2.834 sum -9.369 -1.609 -4.750 10.626 Atomic orbital electron populations 1.22489 0.86937 1.02421 1.00884 1.60645 1.08249 1.14653 1.36064 1.23260 0.96142 0.87740 1.00936 1.21199 0.96330 0.97331 0.96892 1.20177 0.98165 0.98186 0.97182 1.19537 0.96701 0.95812 0.89725 1.20134 1.02445 0.97204 0.98452 1.20765 0.96089 0.99409 0.96112 1.20860 0.96953 0.96030 1.01276 1.19818 0.95923 0.92728 0.90792 1.17949 0.87014 0.87986 0.93986 0.93371 1.59560 1.10942 1.37356 1.30227 1.21723 0.93326 1.15853 1.27050 0.92808 1.25009 0.94873 0.97173 0.96520 1.69736 1.00219 1.39794 1.43476 0.86596 0.78105 0.81931 0.81033 1.20238 1.21155 1.20205 0.94717 0.91272 0.91165 0.92678 0.89421 0.89274 0.90205 0.87488 0.86807 0.85949 0.82898 0.87871 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.16 60.06 0.55 0.80 16 2 N -0.48 -7.79 5.31 -176.84 -0.94 -8.73 16 3 C 0.05 0.69 6.91 -2.43 -0.02 0.67 16 4 C -0.08 -1.47 6.59 -26.61 -0.18 -1.65 16 5 C -0.13 -2.78 6.05 -104.04 -0.63 -3.41 16 6 C 0.08 1.48 5.95 -83.41 -0.50 0.98 16 7 C -0.16 -2.80 9.53 -39.27 -0.37 -3.18 16 8 C -0.11 -1.84 10.02 -39.68 -0.40 -2.24 16 9 C -0.13 -2.67 9.28 -39.53 -0.37 -3.04 16 10 C 0.01 0.19 4.98 -104.72 -0.52 -0.33 16 11 C 0.24 6.01 2.80 -70.02 -0.20 5.82 16 12 H 0.05 1.33 7.89 -51.93 -0.41 0.92 16 13 N -0.85 -20.37 8.79 -6.66 -0.06 -20.43 16 14 C -0.54 -14.39 8.71 -34.44 -0.30 -14.69 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 17 N -0.89 -24.39 11.54 55.43 0.64 -23.75 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.83 7.31 -51.93 -0.38 0.45 16 25 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.11 1.57 7.38 -52.49 -0.39 1.19 16 30 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.12 2.38 6.29 -52.49 -0.33 2.05 16 32 H 0.35 9.05 7.08 -39.29 -0.28 8.77 16 33 H 0.31 7.06 7.20 -39.29 -0.28 6.77 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 277.62 15.07 4.18 4.18 Total: -1.00 -28.16 277.62 -8.77 -36.93 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -4.55 Total: 14.59 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.02 Total: -18.58 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.36 Total: -52.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.16 -8.77 -36.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.477 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds