Wall clock time and date at job start Mon Mar 30 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47903 * 110.99972 * 2 1 4 4 C 1.54608 * 102.62875 * 149.11978 * 3 2 1 5 5 C 1.51567 * 102.83602 * 334.45590 * 4 3 2 6 6 C 1.39009 * 107.95110 * 15.94346 * 5 4 3 7 7 C 1.39355 * 119.09270 * 180.42530 * 6 5 4 8 8 C 1.37960 * 120.19589 * 359.79306 * 7 6 5 9 9 C 1.38258 * 120.26436 * 359.97438 * 8 7 6 10 10 C 1.37879 * 131.56636 * 196.34206 * 5 4 3 11 11 C 1.50690 * 119.96024 * 359.60286 * 10 5 4 12 12 H 1.09003 * 109.47525 * 325.23112 * 11 10 5 13 13 N 1.46899 * 109.47338 * 205.23491 * 11 10 5 14 14 C 1.50697 * 109.47139 * 85.23497 * 11 10 5 15 15 H 1.08001 * 120.00159 * 0.02562 * 14 11 10 16 16 C 1.37882 * 120.00301 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99699 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00270 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47138 * 60.00005 * 18 16 14 20 20 H 1.48502 * 109.47000 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47241 * 300.00101 * 18 16 14 22 22 H 1.09003 * 109.47636 * 300.02989 * 1 2 3 23 23 H 1.09001 * 109.47195 * 60.02500 * 1 2 3 24 24 H 1.09004 * 109.47478 * 180.02562 * 1 2 3 25 25 H 1.09001 * 110.78259 * 30.83807 * 3 2 1 26 26 H 1.09007 * 110.77738 * 267.39978 * 3 2 1 27 27 H 1.08999 * 110.73765 * 216.11890 * 4 3 2 28 28 H 1.09006 * 110.73767 * 92.79439 * 4 3 2 29 29 H 1.08000 * 119.90360 * 179.77460 * 7 6 5 30 30 H 1.08007 * 119.86355 * 180.02562 * 8 7 6 31 31 H 1.08002 * 120.05433 * 180.10022 * 9 8 7 32 32 H 1.00904 * 111.00538 * 176.04842 * 13 11 10 33 33 H 1.00902 * 110.99650 * 299.99883 * 13 11 10 34 34 H 0.97004 * 119.99959 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.3290 1.2324 0.7743 5 6 3.0806 0.0129 1.6395 6 6 1.9708 -0.6532 1.1326 7 6 1.5296 -1.8138 1.7653 8 6 2.1920 -2.2927 2.8767 9 6 3.2977 -1.6255 3.3703 10 6 3.7374 -0.4685 2.7521 11 6 4.9387 0.2635 3.2923 12 1 5.5020 0.6970 2.4659 13 7 5.7946 -0.6764 4.0285 14 6 4.4833 1.3604 4.2199 15 1 3.4293 1.5120 4.4005 16 6 5.4122 2.1698 4.8388 17 7 6.6956 1.9849 4.6193 18 14 4.8477 3.5300 5.9880 19 1 4.0794 2.9400 7.1136 20 1 6.0315 4.2513 6.5205 21 1 3.9833 4.4804 5.2432 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8902 24 1 -0.3634 -1.0277 0.0005 25 1 1.3207 2.0554 0.5224 26 1 2.1808 1.7252 -1.0181 27 1 3.5167 2.1113 1.3909 28 1 4.1575 1.0566 0.0882 29 1 0.6665 -2.3397 1.3847 30 1 1.8457 -3.1930 3.3627 31 1 3.8146 -2.0044 4.2396 32 1 6.6389 -0.2241 4.3459 33 1 5.2949 -1.0920 4.8003 34 1 7.3491 2.5546 5.0544 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:49 Heat of formation + Delta-G solvation = 15.052247 kcal Electronic energy + Delta-G solvation = -16301.647068 eV Core-core repulsion = 13812.157533 eV Total energy + Delta-G solvation = -2489.489535 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.55118 -38.18283 -36.16918 -33.82601 -32.97023 -30.16257 -29.81763 -27.92236 -26.49812 -24.59159 -23.19142 -22.09965 -20.54853 -18.58147 -17.67665 -16.95014 -16.61625 -16.32046 -16.21926 -15.76494 -14.84866 -14.69076 -14.17276 -13.95899 -13.70151 -13.55006 -13.23563 -12.94564 -12.85872 -12.73884 -12.57728 -12.33679 -12.25301 -12.01951 -11.97452 -11.22553 -10.74388 -10.65430 -9.44244 -9.14973 -8.55805 -8.12507 -6.38770 0.60029 0.68273 1.35890 1.36546 1.45026 2.34356 2.77180 3.03155 3.09220 3.75969 3.82077 4.18265 4.20181 4.32281 4.38353 4.48514 4.57361 4.72126 4.74092 4.77428 4.82206 4.93092 4.99080 5.02950 5.26508 5.40369 5.51357 5.60058 5.70170 5.83078 5.98640 6.12057 6.15037 6.44225 6.63396 6.92450 7.10437 7.37248 8.81374 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027870 B = 0.008470 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.428360 B = 3304.853053 C = 3762.118386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.487 5.487 3 C 0.054 3.946 4 C -0.083 4.083 5 C -0.167 4.167 6 C 0.080 3.920 7 C -0.158 4.158 8 C -0.096 4.096 9 C -0.151 4.151 10 C -0.024 4.024 11 C 0.248 3.752 12 H 0.009 0.991 13 N -0.843 5.843 14 C -0.551 4.551 15 H 0.041 0.959 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.274 1.274 22 H 0.031 0.969 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.121 0.879 32 H 0.344 0.656 33 H 0.319 0.681 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -3.380 -6.136 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.201 5.201 3 C -0.071 4.071 4 C -0.121 4.121 5 C -0.171 4.171 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.114 4.114 9 C -0.171 4.171 10 C -0.025 4.025 11 C 0.138 3.862 12 H 0.026 0.974 13 N -0.372 5.372 14 C -0.591 4.591 15 H 0.060 0.940 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.200 1.200 22 H 0.050 0.950 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.034 -3.925 -7.333 13.817 hybrid contribution -0.024 1.918 2.146 2.878 sum -11.058 -2.008 -5.187 12.378 Atomic orbital electron populations 1.22632 0.84432 1.03747 1.02052 1.60676 1.10407 1.14661 1.34406 1.23294 0.94118 0.87744 1.01981 1.21200 0.98393 0.95790 0.96709 1.20476 0.99429 0.99574 0.97572 1.19835 0.95838 0.96100 0.90001 1.20566 1.02978 0.96556 0.97770 1.21136 0.94499 0.99917 0.95853 1.20964 0.98463 0.95941 1.01688 1.19730 0.95952 0.94201 0.92625 1.17693 0.87796 0.88220 0.92519 0.97352 1.59522 1.10469 1.36881 1.30359 1.21862 0.92707 1.16838 1.27658 0.94037 1.25719 0.94940 0.99161 0.97850 1.69838 1.00992 1.40535 1.44148 0.85638 0.77786 0.79263 0.79112 1.19820 1.20493 1.19967 0.94984 0.88683 0.89825 0.91786 0.86660 0.91642 0.90687 0.83999 0.83089 0.86113 0.84120 0.87068 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.16 127.69 1.17 1.55 16 2 N -0.49 -14.47 5.31 -713.39 -3.79 -18.26 16 3 C 0.05 1.55 6.91 86.66 0.60 2.15 16 4 C -0.08 -3.14 6.59 30.67 0.20 -2.94 16 5 C -0.17 -7.04 6.05 -19.49 -0.12 -7.16 16 6 C 0.08 2.84 5.95 38.28 0.23 3.07 16 7 C -0.16 -4.99 9.53 22.47 0.21 -4.77 16 8 C -0.10 -3.12 10.02 22.21 0.22 -2.90 16 9 C -0.15 -6.10 9.28 22.30 0.21 -5.89 16 10 C -0.02 -1.10 4.98 -19.93 -0.10 -1.20 16 11 C 0.25 12.99 2.80 43.42 0.12 13.11 16 12 H 0.01 0.50 7.89 -2.39 -0.02 0.49 16 13 N -0.84 -41.95 8.79 -174.97 -1.54 -43.49 16 14 C -0.55 -30.40 8.71 25.60 0.22 -30.18 16 15 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 16 C 0.02 1.28 5.38 84.66 0.46 1.73 16 17 N -0.92 -51.29 11.54 21.45 0.25 -51.04 16 18 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H 0.03 0.72 8.09 -2.39 -0.02 0.71 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.61 7.31 -2.38 -0.02 1.59 16 25 H 0.06 1.72 7.84 -2.39 -0.02 1.70 16 26 H 0.12 2.64 8.14 -2.38 -0.02 2.63 16 27 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.14 3.47 7.38 -2.91 -0.02 3.45 16 30 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.12 4.74 6.29 -2.91 -0.02 4.72 16 32 H 0.34 18.27 7.08 -89.69 -0.63 17.64 16 33 H 0.32 14.89 7.20 -89.69 -0.65 14.24 16 34 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -61.95 277.62 0.21 -61.74 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.17 Total: 39.28 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 3.42 Total: -33.43 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.08 Total: -112.79 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.95 0.21 -61.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.795 kcal (2) G-P(sol) polarization free energy of solvation -61.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds