Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47908 * 110.99901 * 2 1 4 4 C 1.54599 * 102.63796 * 94.57174 * 3 2 1 5 5 C 1.51579 * 102.82483 * 25.56498 * 4 3 2 6 6 C 1.39008 * 107.94710 * 343.96141 * 5 4 3 7 7 C 1.39358 * 119.08526 * 179.59119 * 6 5 4 8 8 C 1.37955 * 120.19819 * 0.13892 * 7 6 5 9 9 C 1.38256 * 120.26582 * 0.04751 * 8 7 6 10 10 C 1.37872 * 131.56475 * 163.79747 * 5 4 3 11 11 C 1.50707 * 119.96150 * 0.42791 * 10 5 4 12 12 H 1.08993 * 109.46862 * 39.99628 * 11 10 5 13 13 N 1.46898 * 109.46896 * 159.99912 * 11 10 5 14 14 C 1.50702 * 109.46936 * 279.99854 * 11 10 5 15 15 H 1.07999 * 120.00286 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99725 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00046 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99962 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47067 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47427 * 119.99309 * 18 16 14 21 21 H 1.48498 * 109.47047 * 239.99705 * 18 16 14 22 22 H 1.08995 * 109.47311 * 300.01164 * 1 2 3 23 23 H 1.09008 * 109.46698 * 60.01197 * 1 2 3 24 24 H 1.08993 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08999 * 110.77814 * 212.85986 * 3 2 1 26 26 H 1.09004 * 110.77649 * 336.28650 * 3 2 1 27 27 H 1.08996 * 110.73801 * 143.89564 * 4 3 2 28 28 H 1.08995 * 110.74200 * 267.04836 * 4 3 2 29 29 H 1.07995 * 119.90288 * 180.11762 * 7 6 5 30 30 H 1.08007 * 119.86806 * 179.76874 * 8 7 6 31 31 H 1.08007 * 120.05674 * 179.87205 * 9 8 7 32 32 H 1.00894 * 111.00294 * 60.00367 * 13 11 10 33 33 H 1.00907 * 110.99408 * 183.95414 * 13 11 10 34 34 H 0.97005 * 120.00018 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 2.2325 1.6535 1.5037 5 6 2.4324 0.2622 2.0709 6 6 1.9708 -0.6534 1.1323 7 6 2.0536 -2.0152 1.4166 8 6 2.5845 -2.4426 2.6161 9 6 3.0372 -1.5237 3.5446 10 6 2.9597 -0.1701 3.2692 11 6 3.4515 0.8331 4.2807 12 1 2.7691 1.6824 4.3114 13 7 3.5096 0.2033 5.6066 14 6 4.8272 1.3079 3.8893 15 1 5.2984 0.9216 2.9976 16 6 5.4845 2.2347 4.6702 17 7 4.9109 2.7047 5.7563 18 14 7.1894 2.8239 4.1847 19 1 7.6084 2.1477 2.9307 20 1 7.1631 4.2930 3.9703 21 1 8.1524 2.4988 5.2674 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 0.5137 -0.8902 24 1 -0.3633 -1.0276 0.0005 25 1 2.9368 1.4351 -0.5529 26 1 1.2665 2.0762 -0.4099 27 1 3.1243 2.2625 1.6516 28 1 1.3610 2.1334 1.9489 29 1 1.7007 -2.7380 0.6961 30 1 2.6427 -3.4991 2.8325 31 1 3.4504 -1.8620 4.4834 32 1 4.1363 -0.5874 5.6041 33 1 3.7749 0.8727 6.3135 34 1 5.3736 3.3566 6.3059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = 36.436593 kcal Electronic energy + Delta-G solvation = -16342.631428 eV Core-core repulsion = 13854.069188 eV Total energy + Delta-G solvation = -2488.562240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23166 -36.71182 -34.44263 -31.92813 -31.05499 -28.73526 -28.34012 -25.99056 -25.39758 -23.05352 -21.62514 -20.58551 -18.99299 -16.54272 -16.13123 -15.66812 -14.96933 -14.79556 -14.56245 -13.97453 -13.45106 -13.00174 -12.82105 -12.55132 -12.05649 -12.03071 -11.66874 -11.61393 -11.39489 -11.05388 -11.02221 -10.74377 -10.53237 -10.46834 -10.00476 -9.52366 -8.91666 -8.68804 -7.83869 -7.37772 -7.21539 -6.11197 -4.27769 2.00049 2.16155 3.18949 3.28147 3.33471 4.05202 4.27810 4.48929 5.09529 5.13695 5.32856 5.34866 5.44266 5.61793 5.65020 5.77727 5.90559 5.93232 6.09041 6.14436 6.27150 6.36817 6.55204 6.69402 6.77579 6.94459 7.14359 7.17025 7.29423 7.38325 7.72498 7.77485 7.85468 8.08703 8.66032 8.91574 9.09316 9.43971 10.86103 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.008569 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.797974 B = 3266.964278 C = 3747.660478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.497 5.497 3 C 0.049 3.951 4 C -0.105 4.105 5 C -0.130 4.130 6 C 0.072 3.928 7 C -0.136 4.136 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.001 4.001 11 C 0.241 3.759 12 H 0.047 0.953 13 N -0.852 5.852 14 C -0.537 4.537 15 H 0.056 0.944 16 C 0.066 3.934 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.312 0.688 33 H 0.355 0.645 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -4.358 -7.553 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.215 5.215 3 C -0.078 4.078 4 C -0.143 4.143 5 C -0.133 4.133 6 C -0.023 4.023 7 C -0.156 4.156 8 C -0.133 4.133 9 C -0.141 4.141 10 C -0.002 4.002 11 C 0.131 3.869 12 H 0.065 0.935 13 N -0.382 5.382 14 C -0.577 4.577 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.171 0.829 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.594 -4.594 -8.013 11.348 hybrid contribution 1.811 1.084 0.405 2.149 sum -4.783 -3.510 -7.608 9.648 Atomic orbital electron populations 1.22419 0.86569 1.02161 1.00604 1.60279 1.07804 1.14916 1.38493 1.23152 1.00611 0.87627 0.96423 1.21563 1.03123 0.95356 0.94301 1.20633 1.03278 0.94852 0.94555 1.19435 0.99836 0.93574 0.89491 1.20167 1.05015 0.92558 0.97851 1.20815 0.99797 0.98951 0.93760 1.20943 1.01318 0.92457 0.99387 1.19854 0.91843 0.94848 0.93686 1.17948 0.94605 0.89717 0.84677 0.93507 1.59561 1.56870 1.13279 1.08460 1.21798 1.01503 1.24302 1.10119 0.92592 1.25016 0.98151 0.95507 0.94987 1.69753 1.37885 1.30891 1.14779 0.86485 0.84014 0.78559 0.78682 1.19694 1.20862 1.20922 0.95032 0.91382 0.91444 0.89664 0.90472 0.88676 0.91052 0.87209 0.86676 0.85728 0.87837 0.82870 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.29 60.07 0.56 0.94 16 2 N -0.50 -8.07 5.33 -176.85 -0.94 -9.01 16 3 C 0.05 0.74 7.00 -2.43 -0.02 0.73 16 4 C -0.11 -1.93 6.64 -26.61 -0.18 -2.10 16 5 C -0.13 -2.69 6.05 -104.04 -0.63 -3.32 16 6 C 0.07 1.33 5.59 -83.41 -0.47 0.87 16 7 C -0.14 -2.36 10.07 -39.27 -0.40 -2.76 16 8 C -0.11 -1.99 10.02 -39.68 -0.40 -2.39 16 9 C -0.12 -2.45 9.26 -39.54 -0.37 -2.82 16 10 C 0.00 -0.03 5.02 -104.71 -0.53 -0.55 16 11 C 0.24 5.99 2.75 -70.01 -0.19 5.80 16 12 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 13 N -0.85 -20.25 8.66 -6.65 -0.06 -20.30 16 14 C -0.54 -14.32 8.70 -34.44 -0.30 -14.62 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 17 N -0.89 -24.38 11.54 55.43 0.64 -23.74 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.74 8.11 -51.92 -0.42 0.32 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 0.96 7.76 -51.93 -0.40 0.56 16 27 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.12 2.40 6.25 -52.48 -0.33 2.07 16 32 H 0.31 7.02 7.28 -39.29 -0.29 6.74 16 33 H 0.36 9.02 7.08 -39.29 -0.28 8.74 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -28.06 279.56 -8.81 -36.87 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -4.63 Total: 14.71 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.00 Total: -18.57 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.36 Total: -53.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.06 -8.81 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.305 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds